Department of Biological Sciences, Wayne State University
2014 Publication (updated January 16, 2015)
Note: Some publications may have been listed as epub in 2013.
Alcedo, Joy
Fernandes de Abreu, D.A., Caballero, A., Fardel, P., Stroustrup, N., Chen, Z.,
Lee, K., Keyes, W.D., Nash, Z.M., Lopez-Moyado, I.F., Vaggi, F.,
Cornils, A., Regenass, M., Neagu, A., Ostojic, I., Liu, C., Cho, Y.,
Sifoglu, D., Shen, Y., Fontana, W., Lu, H., Csikasz-Nagy, A., Murphy,
C.T., Antebi, A., Blanc, E., Apfeld, J., Zhang, Y., Alcedo, J., and Ch'ng,
Q. (2014). An Insulin-to-Insulin Regulatory Network Orchestrates
Phenotypic Specificity in Development and Physiology. PLoS Genetics 10,
e1004225. Link
Waterson, M.J., Chung, B.Y., Harvanek, Z.M., Ostojic, I., Alcedo, J., and
Pletcher, S.D. (2014). Water sensor ppk28 modulates Drosophila lifespan
and physiology through AKH signaling. Proceedings of the National
Academy of Sciences 111, 8137-8142. Link
Allen, E.N., Ren, J., Zhang, Y., and Alcedo, J. (2014). Sensory systems: their
impact on C. elegans survival. Neuroscience. Link
Ostojic, I., Boll, W., Waterson, M.J., Chan, T., Chandra, R., Pletcher, S.D., and
Alcedo, J. (2014). Positive and negative gustatory inputs affect Drosophila
lifespan partly in parallel to dFOXO signaling. Proc Natl Acad Sci U S A
111, 8143-8148. Link
Anantharam, Arun
Passmore, D.R., Rao, T., and Anantharam, A. (2014a). Real-time investigation of
plasma membrane deformation and fusion pore expansion using polarized
Total Internal Reflection Fluorescence Microscopy. Methods Mol Biol 1174,
263-273. Link
Passmore, D.R., Rao, T.C., Peleman, A.R., and Anantharam, A. (2014b).
Imaging plasma membrane deformations with pTIRFM. J Vis Exp. Link
Rao, T.C., Passmore, D.R., Peleman, A.R., Das, M., Chapman, E.R., and
Anantharam, A. (2014). Distinct fusion properties of synaptotagmin-1 and
synaptotagmin-7 bearing dense core granules. Mol Biol Cell 25, 2416-2427.
Link
Weiss, A.N., Anantharam, A., Bittner, M.A., Axelrod, D., and Holz, R.W.
(2014). Lumenal protein within secretory granules affects fusion pore
expansion. Biophys J 107, 26-33. Link
Arking, Robert
Barnes, V.L., Bhat, A., Unnikrishnan, A., Heydari, A.R., Arking, R., and Pile,
L.A. (2014). SIN3 is critical for stress resistance and modulates adult
lifespan. Aging (Albany NY) 6, 645-660. Link
Craig, T., Smelick, C., Tacutu, R., Wuttke, D., Wood, S.H., Stanley, H.,
Janssens, G., Savitskaya, E., Moskalev, A., Arking, R., and de
Magalhaes, J.P. (2014). The Digital Ageing Atlas: integrating the diversity
of age-related changes into a unified resource. Nucleic Acids Res. Link
Park, J.S., Pyo, J.H., Na, H.J., Jeon, H.J., Kim, Y.S., Arking, R., and Yoo, M.A.
(2014). Increased centrosome amplification in aged stem cells of the
Drosophila midgut. Biochem Biophys Res Commun 450, 961-965. Link
Beningo, Karen
Subramonian, D., Raghunayakula, S., Olsen, J.V., Beningo, K.A., Paschen, W.,
and Zhang, X.D. (2014). Analysis of changes in SUMO-2/3 modification
during breast cancer progression and metastasis. J Proteome Res 13, 39053918. Link
Dowling, Thomas
Dowling, T.E., Turner, T.F., Carson, E.W., Saltzgiver, M.J., Adams, D., Kesner,
B., and Marsh, P.C. (2014). Time-series analysis reveals genetic responses
to intensive management of razorback sucker (Xyrauchen texanus).
Evolutionary Applications 7, 339-354. Link
Ley, G., Saltzgiver, M.J., Dowling, T.E., Karam, A.P., Kesner, B.R., and Marsh,
P.C. (2014). Use of a molecular assay to detect predation on an endangered
fish species. Transactions of the American Fisheries Society 143, 49-54. Link
Unmack, P.J., Dowling, T.E., Laitinen, N.J., Secor, C.L., Mayden, R.L.,
Shiozawa, D.K., and Smith, G.R. (2014). Influence of Introgression and
Geological Processes on Phylogenetic Relationships of Western North
American Mountain Suckers (PantosteusCatostomidae). PLoS One 9,
e90061Link
Fan, Chuanzhu
Sivaji, M., Sadasivam, V., Narayanasamy, J., Samuel, S., and Fan, C. (2014).
Detection, characterization and evolution of internal repeats in Chitinases of
known 3-D structure. PLoS One 9, e91915. Link
Wang, J., and Fan, C. (2014). A Neutrality Test for Detecting Selection on DNA
Methylation Using Single Methylation Polymorphism Frequency Spectrum.
Genome Biol Evol. Link
Wang, J., Marowsky, N.C., and Fan, C. (2014). Divergence of gene body DNA
methylation and evolution of plant duplicate genes. PLoS One 9, e110357.
Link
Wang, M., Yu, Y., Haberer, G., Marri, P.R., Fan, C., Goicoechea, J.L., Zuccolo,
A., Song, X., Kudrna, D., Ammiraju, J.S.S., Cossu, R.M., Maldonado, C.,
Chen, J., Lee, S., Sisneros, N., de Baynast, K., Golser, W., Wissotski, M.,
Kim, W., Sanchez, P., Ndjiondjop, M.-N., Sanni, K., Long, M., Carney,
J., Panaud, O., Wicker, T., Machado, C.A., Chen, M., Mayer, K.F.X.,
Rounsley, S., and Wing, R.A. (2014). The genome sequence of African rice
(Oryza glaberrima) and evidence for independent domestication. Nat Genet
46, 982-988. Link
Friedrich, Markus
Initiative, I.G.G. (2014). Genome Sequence of the Tsetse Fly (Glossina morsitans):
Vector of African Trypanosomiasis. Science 344, 380-386. Link
Luan, Q., Chen, Q., and Friedrich, M. (2014). The Pax6 genes eyeless and twin of
eyeless are required for global patterning of the ocular segment in the
Tribolium embryo. Dev Biol 394, 367-381. Link
Mahato, S., Morita, S., Tucker, A.E., Liang, X., Jackowska, M., Friedrich, M.,
Shiga, Y., and Zelhof, A.C. (2014). Common transcriptional mechanisms
for visual photoreceptor cell differentiation among Pancrustaceans. PLoS
Genet 10, e1004484. Link
Greenberg, Miriam
Jadhav, S., and Greenberg, M.L. (2014). Harnessing the power of yeast to
elucidate the role of sphingolipids in metabolic and signaling processes
pertinent to psychiatric disorders. Clinical Lipidology 9, 533-551. Link
Raja, V., and Greenberg, M.L. (2014). The functions of cardiolipin in cellular
metabolism-potential modifiers of the Barth syndrome phenotype. Chem
Phys Lipids 179, 49-56. Link
Ye, C., and Greenberg, M.L. (2014). Inositol synthesis regulates the activation of
GSK-3alpha in neuronal cells. J Neurochem. Link
Ye, C., Lou, W., Li, Y., Chatzispyrou, I.A., Hüttemann, M., Lee, I., Houtkooper,
R.H., Vaz, F.M., Chen, S., and Greenberg, M.L. (2014). Deletion of the
Cardiolipin-specific Phospholipase Cld1 Rescues Growth and Life Span
Defects in the Tafazzin Mutant: IMPLICATIONS FOR BARTH
SYNDROME. Journal of Biological Chemistry 289, 3114-3125. Link
Ye, C., Shen, Z., and Greenberg, M.L. (2014). Cardiolipin remodeling: a
regulatory hub for modulating cardiolipin metabolism and function. J
Bioenerg Biomembr. Link
Hao, Weilong
Kim, T., and Hao, W. (2014). DiscML: an R package for estimating evolutionary
rates of discrete characters using maximum likelihood. BMC Bioinformatics
15, 320. Link
Wu, B., and Hao, W. (2014). Horizontal transfer and gene conversion as an
important driving force in shaping the landscape of mitochondrial introns. G3
(Bethesda) 4, 605-612. Link
Higgs, Penelope
Higgs, P.I., Hartzell, P.L., C., H., and Hoiczyk, E. (2014). Myxococcus xanthus
vegetative and developmental cell heterogeneity. In Myxobacteria: Genomics
and Molecular Biology, Z. Yang and P.I. Higgs, eds (Norfolk, UK.: Caister
Academic Press), pp. 51-77.
Holkenbrink, C., Hoiczyk, E., Kahnt, J., and Higgs, P.I. (2014). Synthesis and
assembly of a novel glycan layer in Myxococcus xanthus spores. J Biol
Chem 289, 32364-32378. Link
Muñoz-Dorado, J., Higgs, P.I., and Elías-Arnanz, M. (2014). Abundance and
complexity of signaling mechanisms in the myxobacteria. In Myxobacteria:
Genomics and Molecular Biology, Z. Yang and P.I. Higgs, eds (Norfolk,
UK: Caister Academic Press), pp. 127-149.
Kashian, Daniel
Binkley, D., and Kashian, D. (2014). Tree-Level Patterns of Lodgepole Pine
Growth and Leaf Area in Yellowstone National Park: Explaining Anomalous
Patterns of Growth Dominance Within Stands. Ecosystems, 1-9. Link
Corace Iii, R.G., Shartell, L.M., Charles Goebel, P., Kashian, D.M., Drobyshev,
I., and Hix, D.M. (2014). Bird communities of reference and altered mixedpine forests: Implications for restoring fire-dependent forest ecosystems.
Forest Ecology and Management 318, 183-193. Link
Cullinane-Anthony, B.L., Seefelt, N.E., Gregory Corace Iii, R., Kashian, D.M.,
and Gehring, T.M. (2014). Influence of residual forest patches on post-fire
bird diversity patterns in jack pine-dominated ecosystems of northern Lower
Michigan. Forest Ecology and Management 331, 93-103. Link
de Bruijn, A., Gustafson, E.J., Kashian, D.M., Dalgleish, H.J., Sturtevant, B.R.,
and Jacobs, D.F. (2014). Decomposition rates of American chestnut
(Castanea dentata) wood and implications for coarse woody debris pools.
Canadian Journal of Forest Research 44, 1575-1585. Link
Schneider, V.P., and Kashian, D.M. (2014). Immediate Herpetofaunal Responses
to Prescribed Burning in Wetlands of Southeastern Michigan. Ecological
Restoration 32, 144-152. Link
Kashian, Donna
Cornwell, E.R., Goyette, J.-O., Sorichetti, R.J., Allan, D.J., Kashian, D.R.,
Sibley, P.K., Taylor, W.D., and Trick, C.G. (2014). Biological and
chemical contaminants as drivers of change in the Great Lakes–St.
Lawrence river basin. Journal of Great Lakes Research. Link
Kashian, D.R., Krause, A.E., Sano, L., Nowell, B., and Drouillard, K.G. (2014).
Capacity building in stakeholders around Detroit River fish consumption
advisory issues. Freshwater Science 33, 674-678. Link
Nowicki, C.J., van Hees, E.H., and Kashian, D.R. (2014). Comparative effects of
sediment versus aqueous polychlorinated biphenyl (PCB) exposure on
benthic and planktonic invertebrates. Environ Toxicol Chem 33, 641-647.
Link
Ram, J.L., Banno, F., Gala, R.R., Gizicki, J.P., and Kashian, D.R. (2014).
Estimating sampling effort for early detection of non-indigenous benthic
species in the Toledo Harbor Region of Lake Erie. Management of
Biological Invasions 5, 209-216. Link
Siersma, H.M.H., Foley, C.J., Nowicki, C.J., Qian, S.S., and Kashian, D.R.
(2014). Trends in the distribution and abundance of Hexagenia spp. in
Saginaw Bay, Lake Huron, 1954–2012: Moving towards recovery? Journal
of Great Lakes Research 40, Supplement 1, 156-167. Link
Stelzer, R.S., and Kashian, D.R. (2014). The role of conservation partnerships
between scientists and nonprofit agencies in freshwater science and
management. Freshwater Science 33, 670-673. Link
Stow, C.A., Dyble, J., Kashian, D.R., Johengen, T.H., Winslow, K.P., Peacor,
S.D., Francoeur, S.N., Burtner, A.M., Palladino, D., Morehead, N.,
Gossiaux, D., Cha, Y., Qian, S.S., and Miller, D. (2014). Phosphorus
targets and eutrophication objectives in Saginaw Bay: A 35 year
assessment. Journal of Great Lakes Research 40, Supplement 1, 4-10. Link
Vijayavel, K., and Kashian, D.R. (2014). Evaluation of Clostridium perfringens as
a tracer of sewage contamination in sediments by two enumeration methods.
Environ Monit Assess 186, 5617-5624. Link
Vijayavel, K., Byappanahalli, M.N., Ebdon, J., Taylor, H., Whitman, R.L., and
Kashian, D.R. (2014). Enterococcus phages as potential tool for identifying
sewage inputs in the Great Lakes region. Journal of Great Lakes Research 40,
989-993. Link
Zein, M.A., McElmurry, S.P., Kashian, D.R., Savolainen, P.T., and Pitts, D.K.
(2014). Optical bioassay for measuring sublethal toxicity of insecticides in
Daphnia pulex. Environmental Toxicology and Chemistry 33, 144-151. Link
Meller, Victoria
Apte, M.S., Moran, V.A., Menon, D.U., Rattner, B.P., Barry, K.H., Zunder,
R.M., Kelley, R., and Meller, V.H. (2014). Generation of a useful roX1
allele by targeted gene conversion. G3 (Bethesda) 4, 155-162. Link
Joshi, S.S., Cheong, H., and Meller, V.H. (2014). A strategy for generation and
balancing of autosome: Y chromosome translocations. Fly (Austin) 8, 58-62.
Link
Menon, D.U., Coarfa, C., Xiao, W., Gunaratne, P.H., and Meller, V.H. (2014).
siRNAs from an X-linked satellite repeat promote X-chromosome
recognition in Drosophila melanogaster. Proc Natl Acad Sci U S A 111,
16460-16465. Link
Pile, Lori
Barnes, V.L., Bhat, A., Unnikrishnan, A., Heydari, A.R., Arking, R., and Pile,
L.A. (2014). SIN3 is critical for stress resistance and modulates adult
lifespan. Aging (Albany NY) 6, 645-660. Link
Popadic, Aleksandar
Liu, J., Lemonds, T.R., and Popadic, A. (2014). The genetic control of aposematic
black pigmentation in hemimetabolous insects: insights from Oncopeltus
fasciatus. Evol Dev 16, 270-277. Link
Medved, V., Huang, Z.Y., and Popadic, A. (2014). Ubx promotes corbicular
development in Apis mellifera. Biol Lett 10, 20131021. Link
Tong, X., Hrycaj, S., Podlaha, O., Popadic, A., and Monteiro, A. (2014). Overexpression of Ultrabithorax alters embryonic body plan and wing patterns in
the butterfly Bicyclus anynana. Dev Biol 394, 357-366. Link
Steiner, Chris
Steiner, C.F. Stochastic sequential dispersal and nutrient enrichment drive beta
diversity in space and time. Ecology 95, 2603-2612. Link
Vasseur, D.A., Fox, J.W., Gonzalez, A., Adrian, R., Beisner, B.E., Helmus,
M.R., Johnson, C., Kratina, P., Kremer, C., de Mazancourt, C., Miller,
E., Nelson, W.A., Paterson, M., Rusak, J.A., Shurin, J.B., and Steiner,
C.F. (2014). Synchronous dynamics of zooplankton competitors prevail in
temperate lake ecosystems. Proceedings of the Royal Society B: Biological
Sciences 281. Link
Tucker, James D.
Bakhmutsky, M.V., Joiner, M.C., Jones, T.B., and Tucker, J.D. (2014).
Differences in cytogenetic sensitivity to ionizing radiation in newborns and
adults. Radiation research 181, 605-616. Link
Joshi, G.S., Joiner, M.C., and Tucker, J.D. (2014). Cytogenetic characterization of
low-dose hyper-radiosensitivity in Cobalt-60 irradiated human
lymphoblastoid cells. . Mutation Research – Fundamental and Molecular
Mechanisms of Mutagenesis 770, 69-78.
Little, M.P., Kwon, D., Doi, K., Simon, S.L., Preston, D.L., Doody, M.M., Lee,
T., Miller, J.S., Kampa, D.M., Bhatti, P., Tucker, J.D., Linet, M.S., and
Sigurdson, A.J. (2014). Association of chromosome translocation rate with
low dose occupational radiation exposures in U.S. radiologic technologists.
Radiation research 182, 1-17. Link
Petibone, D.M., Tucker, J.D., and Morris, S.M. (2014). Chromosome painting of
mouse peripheral blood and spleen tissues. In Genotoxicity and DNA Repair:
A Practical Approach; Methods in Pharmacology and Toxicology, L.M.
Sierra and I. Gaivão, eds (New York Springer Science+Business Media), pp.
141-158.
Seth, I., Joiner, M.C., and Tucker, J.D. (2014a). Cytogenetic Low-Dose
Hyperradiosensitivity Is Observed in Human Peripheral Blood Lymphocytes.
Int J Radiat Oncol Biol Phys. Link
Seth, I., Schwartz, J.L., Stewart, R.D., Emery, R., Joiner, M.C., and Tucker,
J.D. (2014b). Neutron exposures in human cells: bystander effect and
relative biological effectiveness. PLoS One 9, e98947. Link
Tucker, J.D., Joiner, M.C., Thomas, R.A., Grever, W.E., Bakhmutsky, M.V.,
Chinkhota, C.N., Smolinski, J.M., Divine, G.W., and Auner, G.W.
(2014). Accurate gene expression-based biodosimetry using a minimal set of
human gene transcripts. Int J Radiat Oncol Biol Phys 88, 933-939. Link
Zhang, Xiang Dong
Cubeñas-Potts, C., Srikumar, T., Lee, C., Osula, O., Subramonian, D., Zhang,
X.-D., Cotter, R.J., Raught, B., and Matunis, M.J. (2014). Identification of
SUMO-2/3-modified proteins associated with mitotic chromosomes.
PROTEOMICS, n/a-n/a. Link
Subramonian, D., Raghunayakula, S., Olsen, J.V., Beningo, K.A., Paschen, W.,
and Zhang, X.D. (2014). Analysis of changes in SUMO-2/3 modification
during breast cancer progression and metastasis. J Proteome Res 13, 39053918. Link