Study Guide for Unit 4: Genetics Chapter 12: The Chromosomal Basis of Inheritance o Chromosome theory of inheritance and Mendel o Wild type o Sex-linked genes and sex chromosomes X-linked genes- what kind of implications? o X-inactivation Barr body Be able to figure out what a heterozygous female would look like using Punnett square and x-inactivation idea. o Linked genes How do they deviate from Mendel Genetic recombination Linked vs. unlinked Parental types Recombinant types (recombinants) Crossing over Why is variation important? Calculation of recombination frequency and what it tells us Recombination frequency and map units Linkage map Chi-square for linked or unlinked hypothesis o Chromosomal alterations Nondisjunction Aneuploidy Monosomic (monosomy) Trisomic (trisomy) How does it happen? Polyploidy Deletions, inversions, translocations, duplications Be able to identify and explain these!!! Chapter 13: The Molecular Basis of Inheritance o Explain the evidence for DNA being the molecule of inheritance Transformation Bacteriophages o DNA structure Double helix Anti-parallel 3’ vs. 5’ Components of DNA o Nucleotides o Phosphate group, deoxyribose sugar, and nitrogenous bases Nitrogenous bases o Adenine, Thymine, Guanine, Cytosine Which bond with which Why do they bond? What holds them together? Which pair bonding is the strongest? What types of organisms might you see a high number of these? Purines vs. Pyrimidines Sugar-phosphate backbone o Charge o Bonding Van der Waals bonding Why are the nitrogenous bases on the inside and the sugar and phosphate groups on the outside? DNA replication Semi-conservative replication Eukaryotic vs. prokaryotic chromosomes Origin of replication Replication fork Enzymes! Helicase DNA polymerase o In which direction is DNA read? Replicated? Ligase Primase Topoisomerase SSBPs Be able to draw replication with major players Leading strand Lagging strand Okazaki fragments and ligase Proof-reading and repairing DNA Mismatch repair How often do mutations occur (relatively)? Evolutionary significance of altered DNA Replicating the ends of DNA molecules Why does it matter? Why does it happen? Telomeres DNA winding Histones Chromatin and chromosomes How are histones attracted to DNA? Nucleosome o Genetic engineering Ethical concerns Plasmids and cloning vectors Nucleoid Recombinant DNA Gene cloning- why do you have to do it? Restriction site Restriction enzyme Restriction fragments Process of recombining DNA Sticky end Polymerase chain reaction Gel electrophoresis Chapter 14: Gene Expression: From Gene to Protein o Gene expression o How is DNA different than RNA? o Central Dogma o Transcription and translation What organisms do these processes occur in? o Transcription DNA to RNA Which nitrogenous base is missing and which one replaces it? Messenger RNA Be able to transcribe a provided DNA template RNA polymerase Direction of synthesis Promoter Terminator Transcription factors TATA box Where does transcription happen in eukaryotes? Why? Template strand RNA strand produced is complementary not identical to DNA template strand o Alteration of RNA produced by transcription 5’ cap- why important? Poly-A tail- why important? RNA splicing- why? Introns vs. exons o Translation mRNA to protein (polypeptide) Where does translation occur? Explain the process- initiation, elongation, and termination mRNA, tRNA, rRNA- what does each do? tRNA and anticodons Codons How many nucleotides in a codon? Why? Be able to translate a provided mRNA sequence into amino acids using a codon chart Ribosomes P, A, and E site Protein-folding and post-translational modifications o Evolutionary significance of genetic code o Mutations of nucleotides Point mutations Substitution Silent mutation Missense mutation Nonsense mutation Insertions and deletions Frameshift mutation Mutagens Transformation lab o Revisit terms from 13.4 (ex. Restriction enzyme, restriction fragment, plasmid, etc) and apply them to the lab o Understand the process- what were we trying to see? o DO NOT NEED TO KNOW THE PRECISE METHODS (ex. Amounts, concentrations, enzyme name). o What is transformation?