1 Supplementary information 2 3 Methods 4 MSC production 5 Expanded MSC from bone marrow are classified as Advanced Therapy Medicinal Products and 6 manufactured in the GMP-licensed Cell Therapy Facility of the UMC Utrecht. The bone marrow 7 aspirates were obtained from third party non-HLA matched healthy donors as approved by the 8 Dutch Central Committee on Research Involving Human Subjects (CCMO, Biobanking bone 9 marrow for MSC expansion, NL41015.041.12). Either the bone marrow donor or the parent or 10 legal guardian of the donor signed the informed consent approved by the CCMO. Bone marrow 11 was separated using a density gradient centrifugation (Lymphoprep, Axis Shield, Oslo, Norway). 12 MSC are isolated by plastic adherence and expanded using the MC3 systems and α-MEM 13 (Minimal Essential medium) with L-glutamine from Macopharma (Tourcoing, France). In short, 14 100-300 x 106 mononuclear cells in culture medium (α-MEM, 5% platelet lysate and 3.3 IU/ml 15 Heparin) are seeded in a 2-layer CellStack (2-CS) using the seeding set. After 7 days, a medium 16 exchange was performed using the exchange sets, depleting all nonadherent cells. When 80 – 17 100% confluency was reached (± 10 days), the cells are harvested using trypsin (TrypLE™ 18 Select Enzyme™, Life technologies Corp. Grand Island, NY, USA). The Passage 1 (P1) cells 19 were seeded in CellStacks (2-5 x 106MSC/2-CS), medium was exchanged and the cells were 20 passaged after ± 6 days (P2). This procedure is repeated to obtain P3 cells for infusion. The mean 21 number of MSC harvested at P3 was 59 x 106 MSC/2-CS. P3 cells were cryopreserved in MACO 22 Biotech freezing EVA bags (Macopharma, Tourcoing,France) in 20 ml 0.9% Sodium Chloride 23 (Fresenius Kabi, Bad Homburg, Germany); 10% CryoSure-DMSO (WAK-Chemie Medical 24 GmbH, Steinbach, Germany); 5% Human Serum Albumin(Cealb, Sanquin, Amsterdam, the 1 25 Netherlands). P3 cells were cryopreserved using a computer-controlled rate freezer (IceCube 26 1810, Sy-Lab GmbH, Neupurkersdorf, Austria) in clinical cell dosages ranging from 20 – 200 27 x106 MSC/bag and stored in the vapor phase of liquid nitrogen (< -150 °C)(1). The MSC batches 28 were released if they fulfilled the following release criteria: immunophenotype of the MSC: 29 >70% CD73+ cells , > 70% CD105+ cells, and >70% CD90+ cells, and <10% CD45+ cells and 30 <1% CD3+ cells; sterility tests according to the European Pharmacopeia: negative for aerobic 31 and anaerobe bacteria, fungi and yeast; mycoplasma < 10 CFU/ml and endotoxin < 1 IU/ml (<5 32 IU/kg/hr). All MSC batches fulfilled the criteria as described by Dominici et al (1) and all MSC 33 were >95 % positive for CD 73/CD 90/CD 105. The MSC bags were thawed in a water bath at 34 37 °C, kept on ice while a sample was taken for cell counting and infused intravenously within 1 35 hour at the clinical wards. The ability of thawed GMP-grade MSC to suppress T-cell 36 proliferation was assessed during the implementation of the MSC production from 5 different 37 donors. Different MSC:Peripheral Blood Mononuclear Cells (PBMC) ratios were assessed as 38 shown in supplementary figure 1. T-cell proliferation was decreased to 38% (mean of all 5 39 assessed MSC donors when added in ratio MSC: PBMC of 1:1). Cell viability of thawed MSC 40 was assessed for each product throughout the whole study and the median viability was 95% 41 (mean 93,5%, standard deviation 7,6%). 42 Assessments 43 FACS stainings were performed with: CD3-PerCP, CD4-PerCP, γδ-TCR-APC, CD80-APC-H7, 44 CD86-PE-Cy7 (BD Pharmingen), CD4-PE, CD8-PerCP, CD19-PerCP, CD14-PerCP, CD141-PE 45 (BDCA3) (BioLegend), CD3-eFluor-450, CD4-PE-Cy7, CD4-Alexa Fluor-780, CD8-APC, 46 CD25-FITC, CD127-PE-Cy7, HLA-DR-FITC, FoxP3-APC, CD20-PacBlue (eBioscience), 47 CD1c-APC (BDCA1), CD303-FITC (Miltenyi). Samples were analyzed with an LSR-II flow 2 48 cytometer (BD Biosciences) and acquired data were analyzed using FACS Diva software (BD 49 Biosciences). 50 51 52 Reference List 53 54 55 56 57 58 (1) Dominici M, Le BK, Mueller I, Slaper-Cortenbach I, Marini F, Krause D, et al. Minimal criteria for defining multipotent mesenchymal stromal cells. The International Society for Cellular Therapy position statement. Cytotherapy 2006;8(4):315-7. 3