Supporting Information Campeau et al., 2014 This supporting information includes additional methods detailing the sampling schedule with an illustration of the hydrological condition in which the systems where sampled (Figure S1) (Section S1). We also present the detailed calculations of the surface water pCO2 and pCH4 (Section S2), gas fluxes and gas exchange coefficient (k600) derived from floating chamber measurements (Section S3) and the non-strictly diffusive component of the CH4 fluxes captured in the floating chamber (Section S4). This document also includes a detailed section about the digital elevation model (DEM) interpolation, used to estimate the rivers and streams area in the region (Table S1) (Section S5). The methods and equations presented in this document can be use by other researchers to quantify similar component of rivers and streams regional scale area and C gas fluxes. 1 S.1 Sampling schedule and hydrological conditions Rivers and streams were sampled during 1 to 9 different synoptic surveys. The periods during which those surveys took place were chosen in order to capture some of the major stream hydrological features. A hydrograph illustrating the hydrological conditions (water level and temperature) for three streams that we continuously monitored in the Abitibi region is presented in Figure S1. The different sampling periods are indicated with gray areas on the x-axis. Figure S1: Hydrograph illustrating the hydrological conditions, water level at gauging station and water temperature, for 3 different monitored streams in the Abitibi region, between May 2010 to August 2011. Gray sections on the x axes indicate sampling periods. No data was recorded between January and March 2011. 2 S.2 Measurements of surface water pCO2 and pCH4 Surface water pCO2 and pCH4 were measured using the headspace equilibrium method. 60 ml polypropylene syringe were used to collect 30ml of stream water from approximately 10cm bellow the surface and added this volume to 30ml of ambient air to create a 1:1 ratio of ambient air: stream water. For pCO2, triplicate syringes were vigorously shaken for 1 minute, in order to equilibrate the gases in water and air. The resulting headspace was directly injected into an infrared gas analyzer (PP Systems, EGM-4). The original surface water pCO2 was then calculated based on the headspace ratio and the in situ measured ambient air pCO2 using the following equation: Ambient pCO2 = (HpCO2–ApCO2)*(A:W)/ Vm +(HpCO2 * AkH)/SkH (S1) where HpCO2 is the equilibrated pCO2 in the headspace (µatm), ApCO2 is atmospheric pCO2 (µatm), A:W is the air to water volume ratio in the syringe, Vm is the gas molar volume at analysis temperature, AkH is Henry’s constant at analysis temperature, and SkH is Henry’s constant at the sample temperature. The atmospheric concentration for CO2 (ApCO2) was determined locally and for every site using the EMG-4. A similar procedure was used for collection of surface water pCH4. The resulting 30 ml headspace, however, was rather injected into 30-mL glass vials equipped with rubber stoppers (20mm of diameters red bromobuptyl) filled with saturated saline solution (David Bastviken, personal communication), and kept inverted until analysis. In the lab, the gas in the headspace of the vials was injected into a Shimadzu GC-8A Gas chromatograph with FID (flame ionization detector), to determine its CH 4 concentration. 3 The original surface water pCH4 was then calculated according to the headspace ratio (eq.S1) and assuming a constant ambient air pCH4 of 1.77 µatm [Denman et al., 2007]. S.3 Determination of pCO2, kCO2 and CO2 fluxes The circular plastic chamber, with a surface area of 0.09 m2 and volume of 16 L, was covered with aluminum foil to reduce solar heating and equipped with an internal thermometer to monitor temperature changes that may affect the exchange rates during the measurements. The floating chamber was connected to an infrared gas analyzer (PPsystem, model EGM-4) via enclosed re-circulating system providing a continuous reading of the CO2 concentrations in the chamber. The rates of change in pCO2 in the chamber were used to estimate ƒCO2 (mmol m-2 d-1) with the following equation: æ s *V ö fCO 2 = ç *t è Vm * S ÷ø (S2) where (s) is the rate of change of the gas in the chamber (µatm min-1), (V) is the volume of the chamber in liters (L), S is the surface area of the chamber (m2), (Vm) (molar volume) is the molar volume of one mole of gas (L mol-1), and (t) is a conversion factor from minutes to day (1d = 1440 min). ƒCO2 was further used to estimate kCO2 by inverting the equation describing Fick’s law, following Vachon et al. [2010] as follows: kCO 2 = fCO 2 kH ( pCO2water - pCO2air ) (S3) 4 where kCO2 is the gas transfer velocity specific for CO2 (in m d-1); ƒCO2 is the measured CO2 flux between the surface water and the atmosphere in the floating chamber, kH is Henry’s constant adjusted for salinity and temperature, and ∆pCO2 is the difference between CO2 partial pressure in the surface waters and the atmosphere (µatm). To simplify the exploration of regional patterns of gas exchange across the fluvial network, we standardized kCO2 to a Schmith number of 600 to derive a k600, with following the equation from Jähne et al. [1987]: k600 = kCO 2 (ScCO 2 / 600)- n (S4) where ScCO2 is the CO2 Schmidt number at the stream water temperature [Wanninkhof, 1992], and n was fixed at 2/3, which corresponds to surface roughness resulted at wind speed of <3.7m s-1 accordingly to [Guérin et al., 2007]. 5 S.4 Quantifying diffusive and non-diffusive CH4 fluxes Due to the low solubility of CH4 in freshwater, ƒCH4 to the atmosphere not only occurs via diffusion but also through none-diffusive pathways, such as ebullition, which may contribute significantly to the total fluvial CH4 emissions [Bastviken et al., 2004; Baulch et al., 2011]. In this regard, the kCH4 derived from the ƒCH4 measured in the floating chambers may reflect both diffusive fluxes as well as potentially non-diffusive ƒCH4, and for this reason the resulting empirical kCH4 are often much higher than those predicted by Fick’s law relative to k600 [Prairie and del Giorgio, 2013]. In order to quantify the contribution of non-diffusive ƒCH4 to the overall ƒCH4, we first calculated the theoretical diffusive kCH4 on the basis of our empirically-determined k600, using equation A4 adjusted for CH4. kCH 4 = k600 (600 / ScCH 4 )- n (S5) This yield a strictly diffusive kCH4 estimate, which we used to back-calculate a theoretical diffusive CH4 flux (mmol m-2 d-1) with the following equation; ƒDCH4= kCH4 * kH (pCH4water-pCH4air) (S6) where ƒDCH4 is the diffusive flux of CH4 at the interface water-air according to Fick’s law; kCH4 is the gas transfer velocity of CH4 derived from the k600; kH is the Henry’s coefficient (adjusted for ambient salinity and temperature); and the pCH4water and the pCH4air are the partial pressure of CH4 in water and air (1.77 µatm), respectively. We then used the difference between ƒDCH4 and the ƒCH4 measured from the floating chambers as an estimate of the potential non-diffusive ƒCH4 [Prairie and del Giorgio, 2013]. 6 S.5 Determination of total river and stream areal coverage Our regional-scale estimate of total fluvial area was based on the tributary classification system of Strahler stream orders, and on that basis calculated the total area covered by each of the 6 different stream orders present in the fluvial network of both regions. We performed a digital elevation model (DEM) interpolation to calculate the length (m) of each stream order in the two regions. The DEM is based on the digitized topography and generates a segment raster map representing a classified linear coverage of stream and rivers according to their Strahler stream orders with a resolution of 100m 2. To run this interpolation, we set a threshold value for water flow accumulation in the landscape, which aimed to match as closely as possible to the length of the rivers and streams available on digitized maps. However, the total cumulative length of streams and rivers (from order 1-6), estimated with the DEM interpolation, was slightly higher when compared to the available digitized data. We assumed that this difference represented the small headwater streams (stream order 0), and further assumed that the DEM interpolation was more accurate. In fact, the smallest streams sampled in our survey, narrower than 0.5m, did not appear at all in the digitized maps, which supports our assumption that digitized streams and rivers underestimated the true areal extend of the fluvial network. We finally combined the estimated stream length (m) per stream order with the average channel width (m) corresponding to each stream order from the data collected on the field for our 46 sampled sites. This yielded an estimate of 190 km2 occupied by the fluvial network, representing approximately 0.4% of the total landscape area considered in this study (44,182 km2) (Table AM1). This represents a drainage density of 1.06 km 7 km-2, and suggests a potential underestimation of the true streams areal coverage [Benstead and Leigh, 2012]. The areal coverage of each Strahler stream orders [1 to 6] was roughly evenly distributed across both regions, averaging 31.8 km2 (Table S1) The largest areal contribution, however, was by stream order 1 (38.7 km2), which occupied about 20% of the total fluvial network area (Table 3 in article). The smallest headwater streams (stream order 0), which do not appear on digitized maps, were combined with the stream order 1, but accounted only and 6% of the total fluvial network and 29% of the surface of stream order 1. The use of the DEM interpolation to estimate the rivers and stream coverage can be problematic in regions of low topography such as Abitibi and James Bay. When comparing our estimate to other studies, however, we find that our estimate are well within the range of published values with fluvial coverage estimate, ranging from 0.9-0.11% in Sweden [Humborg et al., 2010; Jonsson et al., 2007], 0.5% in the US [Butman and Raymond, 2011], and 0.3 to 0.6% at the global scale [Downing et al., 2012]. It should be mentioned that there is relatively high uncertainty associated to our estimates of river and stream area (Table S1). Flowing water systems are extremely dynamic, especially in terms of width that fluctuates among seasons, and also within streams in the same stream order category. Methods and tools to properly assess river areal coverage is an essential component in the determination of their biogeochemical function, and need to be further advanced. 8 Table S1: Summary of the results from the DEM interpolation used to estimate fluvial network surface in Abitibi and James Bay (44,182 km2). The table presents the distribution and characteristics for each Strahler stream orders in the fluvial network, the number and average total stream length (TSL) of the different sites visited in each stream order category. Stream order zero represents the category of stream that appeared in the digital elevation model (DEM) but did not figure on digitized maps. The uncertainty of the estimated regional surface for each stream order was based on the changes in width of the streams during the different seasons and the natural variability of width between streams of the same order. Order n 0 1 2 3 4 5 6 Total 5 14 9 6 7 2 3 46 Average Average Cumulative Stream areal Regional TSL for channel width regional stream coverage stream surface sampled sites for sampled sites length 2 in the region (km ) (km) (m) (km) (%) 0.33 1.74 7.06 39.44 156.85 337.73 3466.11 0.8 1.83 2.37 7.16 18.42 41.59 120.0 13 718 15 018 11 412 4 323 1 643 827 242 47 183 10.97 (±8.2) 27.48 (±20.3) 27.07 (±17.1) 30.96 (±29.1) 30.26 (±28.0) 34.41 (±14.5) 28.99 (±7.2) 190 (±124) 0.02% 0.06% 0.06% 0.07% 0.07% 0.08% 0.07% 0.43% 9 References Bastviken, D., J. Cole, M. Pace, and L. Tranvik (2004), Methane emissions from lakes: Dependence of lake characteristics, two regional assessments, and a global estimate, Global Biogeochemical Cycles, 18, GB4009. Baulch, H. M., P. J. Dillon, R. Maranger, and S. L. Schiff (2011), Diffusive and ebullitive transport of methane and nitrous oxide from streams: Are bubble-mediated fluxes important?, Journal of Geophysical Research, 116, G04028. Benstead, J. P., and D. 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