BIOL 190L: Introduction to Cell and Molecular Biology Lab FALL 15 PROFESSOR O’TOOLE (ed. 8-13-15) Phone 423-7565 EXT. 2233 (OFFICE) Faculty Office VRGH 316 Email holly.otoole@wnc.edu General Information o o o o o Name: Introduction to Cell and Molecular Biology Lab Discipline: Biology (BIOL) Units (Credits): 1 Transfer Information: Courses with an 'L' Designator after the number: This is a laboratory course is designed to apply toward a WNC degree and/or transfer to other schools within the Nevada System of Higher Education, depending on the degree chosen and other courses completed. It may transfer to colleges and universities outside Nevada. For information about how this course can transfer and apply to your program of study, please contact a counselor. Academic Division: Liberal Arts Prerequisites and Recommended Courses o Corequisites: BIOL 190 Course Outline I: Catalog Course Description Covers the structure and function of cells. Included will be the major molecules of life, composition and physiology of cellular organelles, cellular metabolism, reproduction, motility, gene function and related topics. BIOL 190 and BIOL 190L must be taken together at WNC II: Course Objectives Upon successful completion of BIOL 190: Introduction to Cell and Molecular Biology and BIOL 190L: Introduction to Cell and Molecular Biology Laboratory, (defined as a 75% course score or better) learners will be able to: The information in the parentheses after a course objective refers to the specific general education (GE) learning outcome that the objective meets. Objectives without this information are not linked to WNC’s general education program. Describe and explain the processes of cellular transport, signaling, metabolism, photosynthesis, cell division (mitosis and meiosis), heredity, gene expression and gene regulation and explain their significance to the functioning of biological systems (GE #1); Illustrate and explain the structure and function of animal and plant cells and sub-cellular organelles (GE #1); Illustrate and explain the function of biomolecules at the sub-cellular and cellular level (GE #1); Draw conclusions from experimentally derived data in the laboratory (GE #1, #4). Course Topics: All learners will have in-depth knowledge of the language of cellular and molecular biology, animal and plant cellular structure and function: Students will explain fundamental concepts associated with atomic structure, chemical bonding, water chemistry, and pH, and apply these concepts to the functioning of biological systems; Students will identify the basic structures and describe the functions of the four major classes of biological macromolecules and cellular structures, including eukaryotic organelles and membranes (and may include prokaryotic cells and viral particles, as well); Students will describe the processes of cellular transport, signaling, introductory intermediary metabolism, photosynthesis, cell division (mitosis and meiosis), heredity, gene expression and gene regulation and explain their significance to the functioning of biological systems; Students will apply scientific reasoning to draw conclusions from experimentally derived data from the Using a Single-Nucleotide Polymorphism to Predict Bitter-Tasting Ability laboratory experiment. III: Course Linkage Linkage of course to educational program mission and at least one educational program outcome. General Education Mission: BIOL 191/191L is a general education class that promotes the development of knowledge, skills, and attitudes that will benefit students in their personal and professional endeavors. General Education Student Learning Outcome: Students who successfully complete BIOL 191/191L satisfy the general education learning outcome of understanding the methods of science and the role of science and technology in the modern world; have problem solving, creative, and critical thinking skills; have effective and efficient learning skills. Program Mission for AA/AS degree: BIOL 191/191L satisfies the A.A./A.S. degree mission by providing academic knowledge and skills for successful transfer to meet higher educational goals. Program Student Learning Outcomes for AA/AS degree: Students who successfully complete Biol 191/191L will know the subject matter appropriate to the emphasis of the degree. ATTENDANCE: Roll will be taken in the lab. If you miss four labs, you cannot pass the lab course. AUDIT AND W POLICY: ______________ Last day to change credit to audit or audit to credit for full-term classes. Change must be made via myWNC. _____________ Last day to drop full-term classes with a “W”. I have a right to modify this syllabus. COURSE RULES and ETTIQUITE: Please refrain from talking to your neighbor during the lecture. No texting or cell phone use is permitted in class. Cell phones and PDAs should be turned off during class and during exams. Laptops and iPads are permitted, but they are to be used for course work only during class. Disruptive behavior will not be tolerated. ACADEMIC INTEGRITY: Students caught cheating will be treated as outlined in Policy No.: 3-4-5 Academic Integrity. ASSISTANCE: If a student has a disability and requires assistance, contact the Disability Resource Center (Susan Trist) to arrange for accommodations. OFFICE HOURS: Monday 3:00 - 4:00 pm Tuesday 4-5 pm Wednesday By appt. Thursday 1-4 pm Friday By appt. GRADING: Lab Quizzes Science Poster or Paper Binder Lab Notebook Science Paper assignments 75% 15% 2.5% 2.5% 5% APPPROXIMATE GRADE SCALE: A AB+ B B- 93-100 90-92 87-89 83-86 80-82 C+ C CD+ D 77-79 73-75 70-72 65-69 60-64 DF 55-59 <55 also given for cheating Students need a lab coat to be worn in the lab. Examination, Quiz, and Assignment Information: 1. The pedagogy of this class will include lecture, discussion, and laboratory exercises. 2. The laboratory quizzes will cover materials presented in the laboratory. They will not be cumulative, but information from the previous material may be needed to answer questions. 3. Lab quizzes will be given at the beginning of each lab class period. The two lowest lab quiz scores will be dropped. No makeup quizzes will be given. If you are more than 10 minutes tardy you will not be given a quiz. 4. Objectives and grades will be posted on WNC online. 5. I will not withdraw failing students. Student who are failing or earning a grade that they are not satisfied with may withdraw themselves by the withdraw date. 6. Be sure and take advantage of the Companion website that comes with your text. 7. Points, up to100% of the total points from that week’s quiz, may be deducted for habitual tardies, early departures, or disruptive behavior. 8. Grades and quiz/test scoring concerns/disagreements/rescoring are issues to be dealt during my office hours. Please do so. Further Information: The class schedule is tentative and will be updated as needed. To do well in a college course demands that your work, personal life, and health allow for you to make your coursework a priority. Attendance: Attendance is required and I will record it. If you miss four labs, you cannot pass the lab course. Student Classroom Conduct: WNC is committed to providing a safe effective learning environment for students, faculty, and staff. Disruptive student conduct is subject to strict disciplinary action. This is a college classroom. You are expected to arrive on time and stay for the entire class period. Late arrivals and early departures are disruptive for the entire class. Three late arrivals/early departures will count as one absence. No children or pets are allowed in class or in the lab. Turn pagers to silent and cellular phones off when you come to class. Behavior that impedes the teaching/learning process including: private conversations; leaving during a guest lecture; late arrivals and early departures; texting, phone, or pager calls; and behaviors that do not contribute to the course learning environment is unacceptable. I reserve the right to administratively fail or withdraw any student who presents behavioral issues that impede the learning environment. Use of any conduct or harassment that threatens the quality of this learning environment will result in immediate removal from the class. Dishonesty/Cheating: Any student determined to be cheating or assisting or participating with another student in dishonest behavior will be immediately withdrawn from the course or receive a grade penalty. The penalty for cheating at WNC is outlined on the WNC website. An Honor Code is inherent in ethical societal behavior: “I will not lie, cheat, steal, nor tolerate those who do”. Come to me if students are violating that code. Laboratory Safety Guidelines: 1. No eating, drinking, smoking, handling contact lens, or applying cosmetics in the laboratory. 2. Lab space is tight. Backpacks are to be placed in a designated area of the lab, not on or under lab tables. 3. Restrain long hair and remove dangling jewelry during dissections. 4. Work surfaces will be washed at the beginning and end of class and whenever a spill occurs. 5. Safety glasses must be worn. You may provide your own. 6. Personal protective equipment (aprons and gloves) will be worn when doing experiments where contamination is possible. All protective equipment will be removed when leaving the laboratory. 7. When working with human blood and other body fluid samples, you are to handle only your own sample. 8. Laboratory work areas will be cleaned up at the end of class and all equipment and materials returned to the proper location. 9. Report all spills or accidents, no matter how minor to the instructor. 10. Hands will be washed after cleaning work surfaces, when hands become contaminated, and when leaving the laboratory. 11. WNC does not have insurance to cover students on campus. All students should carry personal medical insurance. 12. Dissections may not be videoed or photographed or posted on any online site. Lab Study Tips: 1. Read labs ahead of time, do questions on labs before lab when possible. 2. Know your lab objectives for the weekly lab quiz. 3. Know assigned diagrams for that week’s lab quiz. 4. Use lab time to do lab exercises: concentrating on lab objectives. Study Tips and Techniques: You should plan to spend at least ten to twelve hours outside class each week to pass the course. Higher grades will require more study time. It will help you to read the assigned material before class. I suggest you download and read the study tips posted on WNC online. If you are having difficulty please consider one or more of the following: 1. Meet with me during my office hours. 2. Read the chapter, do the online quizzes, rewrite answers to the objectives. 3. Start a study group with some of your classmates and study, study, study!! 4. Take responsibility for your own grade. 5. Log your study time. Be honest about how much time you are actually studying. Extra Credit Perfect attendance is worth 10 points which will be averaged into your reading quiz grade. You may have no absences, no tardies, and no instances where you leave class early to earn perfect attendance. Assistance: Qualified, self-identified students with documented disabilities have the right to free accommodations to ensure equal access to educational opportunities at WNC. For assistance contact Disability Support Services on the Carson Campus in the Bristlecone Bld. Room 103 or call 775-445-3267 or 775-445-3266. BIOL 190/L Introduction to Cell and Molecular Biology --- (rev. 8-13-15) Week Date Lecture Lab 1 9-1 Brief Intro: Reductionism vs Systems Approach Chapter 2 Chemical Context of Life Chemistry Continued LABQUEST 2 Tutorial 2 9-8 Chapter 2 Chemical Context of Life MATH LAB using LABQUEST 2: View Video on Using LabQuest, Significant Figures, Scientific Notation, SI System, Measurement, Lab Equipment ID 3 9-15 Chapter 3 Water and Life pH AND BUFFER LAB using LABQUEST 2 4 9-22 Exam #1 Intro, Chemistry & Water Chapter 4 Carbon and Molecular Diversity PROTEIN DETERMINATIONBRADFORD ASSAY 5 9-29 The Case Against Sugar Paper #1 due Chapter 5 Structure and Function of Large Biological Molecules MOLECULAR MODELS LAB Molecular models of glucose, cholesterol, DNA, triglyceride, amino acid, alpha helix, beta-pleated sheet, polysaccharide, and ethanol (use cell phone and printers) 6 10-6 Chapter 6 A Tour of the Cell BRIGHTFILED MICROSCOPE & COUNTING CELLS W/ HEMOCYTOMETER 7 10-13 Chapter 7 Membrane Structure and Function DIFFUSION using LABQUEST 2 8 10-20 Exam #2 Carbon, Bio Molecules & Cell, Membrane ENZYME CATYLIST LABQUEST 2 Chapter 8 An Introduction to Metabolism 9 10-27 Chapter 9 Cellular Respiration and Respiration RESPIRATION/FERMENTATION (germinate peas) 10 11-3 NOVA Cracking Code of Life Paper #2 due Chapter 10 Photosynthesis PHOTOSYNTHESIS using LABQUEST 2 Abstract and Introduction assignment 11 11-10 Chapter 11 Cell Communication PCR PROJECT: 6 WEEKS Using a Single Nucleotide Polymorphism to Predict Bitter Tasting Ability Materials and Methods assignment 12 11-17 Exam #3 Metabolism, Respiration, Photosynthesis Results and Discussion assignment & Cell Communication Chapter 12 The Cell Cycle 13 11-24 Holiday 14 12-1 Chapter 13 Meiosis and Sexual Life Cycles Chapter 15 The Molecular Basis of Inheritance Reference assignment EXTRACT DNA LAB 15 12-8 True Believer: the Role of KRAS Variant in Cancer Paper #3 due Chapter 16 Gene Expression From Gene to Gene Chapter 17 Regulation of Gene Expression Writing group paper/poster 16 12-15 Exam #4 Cell Cyle, Meiosis, Genetics TURN IN PROJECT WRITE-UP IN SCIENCE JOURNAL FORM OR TURN IN SCIENCE POSTER OF PROJECT