Professor Marc Lippman Editor in Chief, Breast Cancer Research and Treatment Dear Prof. Lippman, Enclosed please find the revised manuscript BREA-D-14-01022: "First trimester human placental factors induce breast cancer cell autophagy". We have carefully read the reviewers’ comments and revised the manuscript accordingly. Our responses to all reviewers' comments are detailed below. In an attached file, you will find the revised manuscript. All changes are marked in yellow. We hope you will find the revised form suitable for publication in "Breast Cancer Research and Treatment". Sincerely yours, Dr. Shelly Tartakover-Matalon Oncogenetic Laboratory Meir Medical Center Kfar Saba, Israel Tel: 972-9-7472841; Fax: 972-9-747114 ; E-mail: Matalon.shelly@clalit.org.il Reviewer #1: 1. "M & M page 5. 10 mM of the autophagy formation inhibitor 3MA is used. This is 10^5 M, and seems like a lot. What is the evidence for specificity at this high concentration?" The 3MA is widely used as an autophagy inhibitor. We used 10-5M (10µM) 3MA in our biological systems. This concentration was previously used by other groups [1, 2] and in our laboratory [3] in order to inhibit autophagy, and the results were published in leading journals. Somehow, in the previous version the "µ" was misplaced with the "m" in the Methods section. This issue was corrected. 2. "page 6. It is stated that LC3BII is a known marker of autophagy. No reference is given. Ideally, the authors should include a biochemical assay to demonstrate that autophagy is actually occurring, rather than simply showing an increase in a marker. This would greatly strengthen the findings." During autophagy, a cytosolic form of LC3 (LC3-I, microtubule-associated protein 1 light chain 3) is bound to phosphatidylethanolamine to form conjugate (LC3BII), which is recruited to the autophagosomal membranes. This process is essential for the formation of the autophagosomes [4].Then the autophagosomes fuse with lysosomes to form autolysosomes and at the same time, the LC3BII in the autolysosomal lumen is degraded. Thus, lysosomal turnover of the autophagosomal marker LC3BII reflects autophagic activity and detecting it by immunoblotting or immunofluorescence has become a reliable method for monitoring autophagy [5, 6]. The reviewer was right for stating that the reference was missing. Therefore, references were added to the first paragraph of the results section in page 7. In addition to the detection of the LC3BII marker, we added the 3MA, which is a well accepted autophagy inhibitor [1, 2]. Autophagy and tumor cell invasion are often interlinked [7, 8]. They were also found to be linked in EVT cells [9]. Therefore, our observation that 3MA inhibited BCCL migration, further supports that the cancer cells underwent autophagy. This information was also added to the manuscript in the discussion section in page 10 and references regarding 3MA role as an autophagy inhibitor were added to the manuscript in page 7. 3. "Figure 1. Despite the graph, the increase in LC3BII seen in the blot is minimal and barely noted with "eyeball densitometry", which is often more credible than a graphic representation of the data." We agree with the reviewer that "eyeball densitometry" is sometimes the best indicator. Our previous photograph contained both LC3BI and LC3BII bands. Only, LC3BII which is the lower band is the indicator for autophagy. In this photograph the LC3BII band of cells that were exposed to the placenta was clearly stronger than the control. Nevertheless, almost no difference was observed in the upper band of LC3BI between experiment and control, which may have misled the reviewer. We understand that showing both bands may mislead other readers as well and therefore we decided to show only the lower band in all our figures including figure 1 and 2. This way, the photograph reflects the values in the graphs. 4. Figure 2. Again, the western blot fails to show substantial differences between control and placenta, despite the graphs and the statistical notation. Please read our previous answer. 5. In Figure 2E, by what biochemical mechanism do the authors explain their findings Autophagy and tumor cell invasion are often linked [7, 8]. We added 3MA, an autophagy inhibitor, to the placenta –BCCL coculture and to the placental soluble factors and demonstrated that it inhibited the BCCL migration. By this, we demonstrated that the autophagy was interlinked to the cancer cell migration in our biological system. Our results showed that placental factors induced HIF1α and BNIP3 expression in the BCCLs. HIF1α is a transcription factor that can promote autophagy through its target BNIP3 [10]. Indeed we demonstrated that the HIF1α inhibitor (Vitexin) prevented the elevation of LC3BII and the migration of BCCL that were exposed to the placental factors and by that proved that this pathway was involved in promoting the autophagy in our system. We also showed that the PR inhibitor (RU486) reduced the placenta induced elevation of HIF1α and LC3BII, demonstrating that progesterone was at least one of the triggers that promoted the autophagy process. These results fit to Zielniok et al. results that demonstrated connection between E2 and progesterone to the expression of the autophagy markers ATG3, ATG5, BECN1 [11]. Recently, Maes H et al. demonstrated that BNIP3 regulates the plasticity of the actin cytoskeletone, which is integral to cell migration [12]. His group showed that BNIP3 has a pro-tumorigenic role, which drives melanoma cancer cell migration [12]. Therefore, during the last month we also analyzed the effect of placental soluble factors on BNIP3 expression and found that it was indeed elevated. These results and the Maes et al. study may provide explanation for the link between autophagy to cell migration in our biological system and suggest that activation of the PR-HIF1α-BNIP3 axis was responsible for the placental induced BCCL autophagy and elevated cancer cell migration. The new data regarding the HIF1α inhibition on LC3BII expression and migration and the effect of placental supernatant on BNIP3 expression was added to the result section in pages 8-9. The explanation concerning the biochemical mechanism that mediates the connection between BCCL autophagy and cell migration was added to the discussion section on pages 10-11. Furthermore, we added a small scheme, which explains the mechanism responsible for the placenta induced BCCL autophagy (Figure 5). 6. Figure 3. The images are not convincing. Further, the authors are claiming an increase in HIF1a and signaling. Although they show that 9 genes are linked to the HIF1a transcription network, no biochemical/mechanistic data are presented to substantiate the array data. At this point, their results are correlative. Some direct demonstration of HIF1a signaling should be presented, and perhaps some experiments with a HIF1a inhibitor. We replaced the images to more convincing ones. In order to establish a mechanism that connects between HIF1α to the autophagy, the HIF1α inhibitor (Vitexin) was added to the placental supernatants and its effects on LC3BII expression and migration were tested. Indeed, we found that the inhibitor prevented the induction of LC3BII expression and the MCF-7 migration, and by that proved that HIF1α regulates the autophagy/migration in our biological system. These results were added to the result section on page 9, and were also discussed on pages 10-11. 7. Figure 4 shows effects of a PG inhibitor. Differences in the western blot are barely perceptible. Given the understandable variability in placental samples that the authors mention at the outset, have they considered measuring the levels of PG in their supernatants? This would strengthen their data. In addition, perhaps they could modulate the experimental system by the addition of exogenous PG. Progesterone levels were not analyzed in this study. Therefore, we cannot perform a correlation test between the Progesterone levels and the LC3BII levels in the BCCLs. Nevertheless, The E2 and Progesterone concentrations in the placental culture media were previously tested by us and were found to be high and similar to those measured during pregnancy [13]. Furthermore, we demonstrated that 1) cancer cells consumed the progesterone [14] 2) the combination of Progesterone and E2 (in placental supernatant concentrations) was sufficient to induce cancer cell motility [14] 3) the PR inhibitor prevented BCCL migration [14] and the autophagy process. Therefore, we believe that our results clearly prove the association between progesterone to BCCL motility and autophagy. Moreover, although we demonstrated that progesterone was involved in mediating the autophagy process, it does not exclude the possibility that other mediators were also involved in this process. Therefore, progesterone level analysis will not necessarily provide a perfect explanation. 8. The Discussion of triple negative breast cancers is a bit confusing since these tumors are PR negative. They cite a recently accepted article on EMT, but how this relates to the present study with PG from placenta is not clear. They also mention STAT3, but this pathway is not developed in the current manuscript. These concepts need to be tied together somehow, or deleted. We agree that these topics were confusing, and thus they were deleted. Instead, we added a new section connecting our results to published data regarding the association between HIF1α and autophagy to breast cancer disease progression and metastasis creation. Reviewer #2: "The manuscript is rich in experimental techniques and interesting results, however, 1- The manuscript needs to be rewritten in a more clearer language". We gave our revised manuscript to a professional English editor. 2. "The introduction is poorly written and lacks a clear aim of the work". As claimed above, we gave our revised manuscript (including the introduction) to a professional English editor. Moreover, we added a clear and defined aim and a sentence that summarizes the conclusion of the manuscript to the end of the introduction (page 4). 3. The message that needs to be conveyed to the reader should be clear from the introduction. A clear aim and a sentence that summarizes the main conclusion which is the message of the manuscript were added to the end of the introduction (page 4). 4. Did you do duplicate, triplicates of your experiments? 5. How many times did you repeat the experiments? The experiments were repeated at least 3 times. Most of the experiments, such as the cell elimination from the placenta, scratch tests and the qPCR were also done in triplicates in each experiment. This information was added to the methods section (pages 5-6). 6. "I would suggest you to study the immunohistochemical expression of markers of autophagy in human breast cancer tissues taken as biopsies during pregnancy". Although this suggestion is very interesting and should be done in the future, it is technically very difficult to perform within the next few months. Breast cancer during pregnancy is a rare event. A physician in our hospital meets such patients once-twice a year. Therefore, collecting several examples of such tumors from pregnant women in order to perform the immunohistochemistry staining may require several years. Moreover, such experiments need an additional ethics committee approval which is currently unavailable. We feel that the contribution of this manuscript to the cancer and pregnancy area is important even without having this additional information. Therefore, although we appreciate the benefit of this idea we wish to publish this basic science manuscript without the suggested staining. In the future, we intend to cooperate with other hospitals in order to have an adequate number of tumors to establish our findings in tumors from pregnant women. 7. The discussion is poorly write with no highlight or comparison to similar work. We added a new part to the discussion which contains the biochemical mechanism that stands behind our findings. 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