Population Genetics Lab #8 Outline Title: Population Genetics Lab #8 Purpose 1st Paragraph: Discuss Hardy-Weinberg Law of Genetic Equilibrium. Discuss and define the equations and the conditions that must be met for a population to remain in equilibrium. Discuss objectives of the lab - to measure allele frequency in a population under various simulated populations. 2nd paragraph: Discuss five sections of the lab and their objective. To estimate the frequency of the PTC tasting allele in a sample population by finding q. To simulate a population of randomly mating heterozygous individuals with an initial gene frequency of 0.5 for the dominant allele and the recessive allele a and genotype frequencies of 0.25 AA, 0.5 Aa, and 0.25 aa. To simulate selection by assuming the homozygous recessive individuals never survive and heterozygous and homozygous survive 100% of the time. To simulate the heterozygous advantage. To simulate an island population that is small. Populations do not interact. Briefly describe the procedure for each simulation 3rd paragraph - Relate the lab to one of the themes in AP Biology 1. Science as a Process 2. Evolution 3. Energy Transfer 4. Continuity and Change 5. Relationship of Structure to Function 6. Regulation 7. Interdependence in Nature 8. Science, Technology, and Society 4th paragraph: Briefly describe results from the lab. Procedure: Use a Heading for Each of the Five Test we did and describe the procedure for Each Section Page 91: Estimating Allele Frequencies for a Specific Trait within a Sample Population Page 92: Case 1: A Test of an Ideal Hardy-Weinberg Population Page 94: Selection Page 95: Heterozygous Advantage Page 96: Genetic Drift Data: Table 1: Phenotypic Proportions of Tasters and Nontasters and Frequencies of the Determining Alleles Phenotypes Allele Frequencies Based on the HW Equation Tasters Nontasters p q (p2 + 2pq) (q2) Class Population # % # % North American Population 0.55 0.45 Case 1: Hardy-Weinberg Equilibrium Case III: Heterozygote Advantage Initial Class Frequencies Initial Class Frequencies AA _____ Aa_____ aa______ AA _____ Aa_____ aa______ My Initial Genotype:_______ My Initial Genotype:_______ F1 Genotype ________ F1 Genotype ________ F6 Genotype _______ F2 Genotype _______ F2 Genotype _______ F7 Genotype _______ F3 Genotype _______ F3 Genotype _______ F8 Genotype _______ F4 Genotype ______ F4 Genotype ______ F9 Genotype________ F5 Genotype _______ F5 Genotype _______ F10 Genotype________ Final Class Frequencies: Final Class Frequencies: (after 5 generations) AA ______ Aa ______ aa______ AA ______ Aa ______ aa______ p _____ q ______ p _____ q ______ Final Class Frequencies: (after 10 generations) AA ______ Aa ______ aa______ Case II: Selection Initial Class Frequencies p _____ q ______ Case IV Genetic Drift Initial Class Frequencies AA _____ Aa_____ aa______ AA _____ Aa_____ aa______ My Initial Genotype:_______ My Initial Genotype:_______ F1 Genotype ________ F1 Genotype ________ F2 Genotype _______ F2 Genotype _______ F3 Genotype _______ F3 Genotype _______ F4 Genotype ______ F4 Genotype ______ F5 Genotype _______ Final Class Frequencies: F5 Genotype _______ Final Class Frequencies: AA ______ Aa ______ aa______ AA ______ Aa ______ aa______ p _____ q ______ p _____ q ______ Analysis Questions Exercise 8A: Estimating Allele Frequencies for a Specific Trait within a Sample Population 1. What is the percent of heterozygous tasters in your class (2pq)? 2. What percentage of the North American population is heterozygous for the taster taste? Exercise 8B: A Test of an Ideal Hardy-Weinberg Population CASE I: A Test of an Ideal Hardy Weinberg Population 1. What does the Hardy-Weinberg equation predict for the new p and q? 2. Do the results you obtained in this simulation agree? If not, why? 3. What major assumption(s) were not strictly followed in this simulation? CASE II: Selection 1. How do the new frequencies of p and q compare to the initial frequencies in Case I? 2. What major assumption(s) were not strictly followed in this simulation? 3. Predict what would happen to the frequencies of p and q if you simulated another five generations. 4. In a large population would it be possible to completely eliminate a deleterious recessive allele? Explain. CASE III: Heterozygote Advantage 1. Explain how the changes in p and q frequencies in Case II compare with Case I and Case III. 2. Do you think the recessive alleles will be completely eliminated in either Case II or Case III? 3. What is the importance of heterozygotes (the heterozygote advantage) in maintaining genetic variation in populations? CASE IV: Genetic Drift 1. Explain how the initial genotypic frequencies of the populations compare. 2. What do your results indicate about the importance of population size as an evolutionary force? HARDY WEINBERG PROBLEMS 1. In Drosophilia the allele for normal length wing is dominant over the allele for vestigal wings (vestigal wings are stubby little curls that cannot be used for flight). In a population of 1,000 individuals, 360 show the recessive phenotype. How many individuals would you expect to be homozygous dominant and heterozygous for this trait? 2. The allele for unattached earlobes is dominant over the allele for attached earlobes. In a population of 500 individuals, 25% show the recessive phenotype. How many individuals would you expect to be homozygous dominant and heterozygous for this trait? 3. The allele for the hair pattern called “widow’s peak” is dominant over the allele for no “widow’s peak”. In a population of 1000 individuals, 510 show the dominant phenotype. How many individuals would you expect each of the possible three genotypes for this trait? 4. In the United States about 16% of the population is Rh negative. The allele for Rh negative is recessive to the allele for Rh positive. If the student population of a high school in the U.S. is 2,000, how many students would you expect for each of the three possible genotypes? 5. In certain African countries 4% of the newborn babies have sickle cell anemia, which is a recessive trait. Out of a random population of 1,000 newborn babies, how many would you expect for each of the three possible genotypes? 6. In a certain population, the dominant phenotype of a certain trait occurs 91% of the time. What is the frequency of the dominant allele? Conclusion 1st Paragraph - Briefly discuss purpose - to test allele frequency in a variety of situations & briefly restate Hardy Weinberg law of equilibrium. 2nd Paragraph - use your data and compare your initial allele frequency 0.25 AA, 0.5 AA, and 0.25 aa with your 5th generation allele frequency for each of the five conditions. Be specific and discuss how and why the value varies from the initial frequency. Did the results meet your expectations? How did the various conditions affect the results? 3rd paragraph - discuss errors in the lab or ways the lab could be improved. What extensions can be made for this lab? 4th paragraph - restate the significance of this lab to society and relate this lab to at least one of the major themes of AP Bio.