Legends to Supplementary Information Figures Figure 1 Analysis of the rescue effects by osteoblast and the involvement of FcR. a, Coculture of osteoclast precursor cells derived from WT, DAP12, FcRand DAP12FcR (DKO) mice with osteoblasts derived from the mutant mice. Osteoblasts derived from WT, DAP12, FcRand DAP12FcRmice have the same ability to support osteoclastogenesis, although the in vitro rescue effect by osteoblasts was only partial. The normal in vivo osteoclastogenesis in FcRmice may be explained as follows: the level of in vitro osteoclast differentiation depends on both FcR- and DAP12mediated signals and FcR-mediated signals alone cannot induce the full activation in vitro. On the other hand, DAP12 deficiency may be fully compensated in vivo through complex mechanisms such as the elevation of RANKL/M-CSF expression and upregulated FcR-mediated signalling. A recent report on the partial rescue of osteoclastogenesis from DAP12 BMMs by high dose M-CSF is consistent with this idea (J. Cell. Biochem. 90, 871, 2003). In addition, we speculate that the defective bone resorbing activity may upregulate the osteoclastogenesis through a feedback mechanism. b, The effect of the culture medium of osteoblasts on RANKL/M-CSF-induced osteoclastogenesis in DAP12BMMs. Osteoblasts were cultured in the presence of 1, 25 (OH)2 vitamin D3 and dexamethasone under the same conditions as those for coculture experiments. Culture supernatant of osteoblasts (OB sup) was recovered after incubation for 1 d () or 2 d (). DAP12BMMs were cultured in these culture mediums with 10% FBS, 100 ng ml1 soluble RANKL and 10 ng ml1 M-CSF. In contrast to the positive effect by coculture, we observed no rescue effect by the culture medium of osteoblasts. These results suggest that the osteoblast culture medium does not contain soluble factors involved in this rescue effect, although additional experimentation is required to confirm the necessity of cell-cell contact. c, Association of FcR or DAP12 with chimaeric receptors overexpressed in 293T cells. FcR associated with RIIB-OSCAR and RIIB-FcRIII (left). Association of DAP12 with RIIB-TREM-1, but not with RIIBOSCAR in 293T cells (right). d, Bone morphometric analysis of FcR mice. There was no significant difference in trabecular bone volume or the number of osteoclasts. n.s.: not significant. e, Osteoclastogenesis in FcR BMMs stimulated with RANKL/M-CSF. There was no significant difference in osteoclast differentiation between WT and FcR BMMs. Figure 2 Bone morphometric and histological analysis of DAP12FcR (DKO) mice. a, Osteoblastic parameters in the bone morphometric analysis of the tibia of WT and DAP12FcR mice (12 weeks of age). For other parameters, see Fig. 2d in the main text. These results reveal that the osteoblastic bone formation is also decreased, excluding the possibility that the increase in bone formation contributes to the increased bone mass. b, Lower magnification view of the histology of the tibia of WT and DAP12FcR mice. Arrowheads indicate a small number of osteoclasts observed below epiphyseal plates in DAP12FcR mice. The appearance of a few number of osteoclasts below epiphyseal plates and the normal tooth eruption contrast with severe osteopetrosis in the bone marrow. The detailed mechanism remains to be elucidated, but it is possible that FcR and DAP12 are required only in the bone marrow, but not in the periosteal/periodontal environments. In terms of the osteoclast differentiation in the bone marrow, DAP12 and FcR compensate for each other by activating the ITAM-mediated common downstream signalling pathways, but mild osteopetrosis in DAP12 mice is attributed to a specific function of DAP12 in the regulation of bone-resorbing activity of osteoclasts, which cannot be compensated by FcR. Figure 3 ITAM-harbouring adaptor-associated immunoreceptors in osteoclast lineage cells. a, mRNA expression of ITAM-harbouring adaptors, associated molecules and immunoreceptors (Affymetrix GeneChip). Multiple immunoreceptors including inhibitory receptors (indicated by the asterisks) were expressed by osteoclast precursor cells (pOC) and mature osteoclasts (mOC). b, FcR-associating proteins on the surface of the osteoclast lineage cells. In pOC glycosylated proteins with predicted core size of 74 and 33 kDa seemed to be major whereas in mOC the 33-kDa species became major. The 33-kDa species disappeared in both OCs from FcRIII mice, indicating that this band represents FcRIII (relative molecular mass (Mr) 40–60 kDa; core size 33 kDa [J. Cell. Sci. Suppl. 9, 45, 1988]). Moreover, in the absence of the 33-kDa species the 74-kDa protein species became the major protein. This glycoprotein may be PIR-A (Mr 85 kDa; core size 73 kDa [Proc. Natl. Acad. Sci. USA 94, 5261, 1997]). Other minor protein species might include FcRI (Mr 70 kDa; core size 49 kDa [Immunology 78, 358, 1993]), OSCAR (Mr is not known; core size 27 kDa [J. Exp. Med. 195, 201, 2002]) and DCAR (Mr is not known; core size 24 kDa [J. Biol. Chem. 278, 32645, 2003]). Thus, the FcR-associating receptors on the OC surface may include FcRIII, PIR-A, FcRI, OSCAR and DCAR. Despite the association of FcR with FcRIII, we observed that the antibody against FcRIIB/III (2.4G2) had no stimulatory effect even on FcRIIB BMMs (data not shown). In addition, unlike DAP12FcR mice, the bone phenotype of DAP12FcRIII mice is almost the same as that of DAP12 mice (M. I. and T. Takai, unpublished observation), suggesting that FcRIII is not critically involved in osteoclastogenesis. c, DAP12-associating proteins on the surface of the osteoclast lineage cells. DAP12-associating proteins with a core size of 16–45 kDa are significant on the cell surface. Among these, in pOC glycosylated proteins with 45, 39, 29, 25 kDa backbones seemed to be major, whereas in mOC those with 45, 39, 29 kDa backbones and non-glycosylated 16-kDa protein were eminent. Referring to the data of known core size for each candidate receptor (TREM-2b and -3, 23 kDa and 18 kDa, respectively [Eur. J. Immunol. 31, 783, 2001]; MDL-1, 22 kDa [Proc. Natl. Acad. Sci. USA 96, 9792,1999] SIRP1, 42 kDa [H. O. and T. M. unpublished observation]), the 45-kDa protein species might be SIRP1, and 25–28-kDa species might include TREM-2b and MDL-1. A weak 18-kDa signal might represent TREM-3. These results suggest that the receptor repertoires associating with DAP12 may include TREM-2, -3, MDL-1, and SIRP1. d, Effect of plate-bound antibodies against immunoreceptors on the rate of apoptotic cells in RANKL-stimulated BMMs. BMMs were stimulated with plate-bound antibodies in the presence of RANKL (100 ng ml1) and M-CSF (10 ng ml1) for 3 d, and were stained for TUNEL. There was no significant difference between control IgG and any antibody stimulation. Figure 4 Intracellular signalling events downstream of ITAM-harbouring adaptors. a, Expression of NFATc1, c-Fos and TRAF6 in WT and DAP12FcR (DKO) cells stimulated with RANKL/M-CSF. Osteoclast precursor cells were cultured in the presence of RANKL (100 ng ml1) and MCSF (10 ng ml1) for 72 h and were stained with anti-NFATc1 and anti-cFos/anti-TRAF6 antibodies (Santa Cruz) as described (Dev. Cell 3, 889, 2002). NFATc1 expression in DAP12FcR cells is barely detectable, but the expression of c-Fos or TRAF6 is still observed. Ph: phase contrast. b, Induction of NFATc1 in DAP12cellsby PIR stimulation. DAP12 BMMs were stimulated with plate-bound anti-PIR antibody in the presence of RANKL (100 ng ml1) and M-CSF (10 ng ml1) for 3 d, and were immunostained with anti-NFATc1 antibody as described above. Stimulation with anti-PIR antibody rescued the NFATc1 expression in DAP12 cells. c, Phosphorylation of p38, JNK and IB by RANKL in WT and DAP12FcR cells. Osteoclast precursor cells were stimulated by RANKL (100 ng ml1) for indicated periods and cell lysates were separated by SDS–PAGE followed by immunoblot with phosphorylation-specific antibodies (Cell Signaling) or other antibodies (p38, JNK; Cell Signaling, -actin; Sigma). In contrast, the phosphorylation of PLC, which may be dependent on the phosphorylation of ITAM, is impaired in DAP12FcR cell (Fig. 4e). RANK is not a tyrosine kinase receptor but associates with TRAF6 linked to various kinases such as c-Src, TAK1 and MAP kinases, among which c-Src may be involved in the phosphorylation of ITAM by RANKL. d, Effect of piceatannol, an inhibitor of the Syk family kinases on RANKL/M-CSF-induced osteoclastogenesis. The effect of piceatannol was examined as described (Nature 416, 744, 2002). The proliferation of BMMs was not affected at these concentrations (data not shown).