1 Supporting Information 2 3 Hoechst staining 4 BMMs (1 104 cells/well) were seeded in a 96-well plate, treated with the vehicle 5 (0.1% DMSO) or praeruptorin A (10 μM) for 2 h in the presence of M-CSF (30 ng/ml), 6 and incubated with RANKL (10 ng/ml) for 1 and 3 days. Then, cells were fixed with 7 10% formalin for 5 min, permeabilized with 0.1% Triton X-100 in PBS for 5 min, 8 washed twice with PBS, and incubated with 10 μg/ml Hoechst 33342 (Carlsbad, CA) 9 for 5 min. Images of stained nucleus were captured under a fluorescent microscope with 10 a DP Controller. 11 12 Osteoclast differentiation 13 To evaluate the stage-dependent anti-osteoclastogenic activity of praeruptorin A, BMMs 14 were isolated and cultured with praeruptorin A (10 M) for various times periods in the 15 presence of M-CSF and RANKL for osteoclast differentiation. After TRAP staining, 16 TRAP-positive multinuclear cells with three or more nuclei were counted as osteoclasts. 17 Furthermore, in order to investigate whether age, strain or sex could affect anti- 18 osteoclastogenic activity of praeruptorin A, mice (male and female ICR strain, 5-week 19 old; male and female C57BL6/N strain, 5-week old and 8-month old) were purchased 20 from Central Lab. Animal Inc. (Seoul, Korea), and as described in the ‘Materials and 21 Methods’, BMMs were isolated and cultured with praeruptorin A in the presence of M- 22 CSF and RANKL for osteoclast differentiation. 23 24 Actin ring staining 1 25 On the differentiation day 4, cells were fixed with 10% formalin for 5 min, 26 permeabilized with 0.1% Triton X-100 in PBS for 5 min, and washed with PBS. Actin 27 rings were stained with 50 μg/ml phalloidin-FITC (Sigma-Aldrich, MO) for 30 min 28 under the condition of light protection. After washing twice with PBS, nuclei were 29 stained with 10 μg/ml Hoechst 33342 for 5 min. Images of stained nucleus were 30 captured under a fluorescent microscope with a DP Controller. 31 32 Bone pit formation analysis 33 BMMs and osteoblasts isolated from the calvariae of newborn mice by serial digestion 34 with collagenase were co-cultured with 1α, 25(OH)2D3 (10-8 M) and PGE2 (10-6 M) in 35 the collagen-coated dishes. After 7 days, multinucleated osteoclasts were replated on 36 BioCoat Osteologic MultiTest slides and after 2 h incubation, cells were further 37 incubated with praeruptorin A and RANKL for 6 h. Then, cells were stained for TRAP, 38 and photographs were taken under a light microscope at 40 magnification. To observe 39 resorption pits, cells on the BioCoat slides were washed with PBS and treated with 5% 40 sodium hypochlorite for 5 min. After washing the plate with PBS buffer and drying, the 41 resorption pits were observed under a light microscope. Quantification of resorbed areas 42 was performed using the ImageJ program. 43 44 Retrovirus preparation and infection 45 Retrovirus preparation and infection were conducted as described in ‘Materials and 46 Methods’. Briefly, to obtain retroviral particles, plasmids of pMX-IRES-GFP (the 47 control) and pMX-c-Fos-GFP were transfected into Plat-E cells using Lipofectamine 48 2000 reagent. After viral particles were collected from the culture medium for 48 h, 2 49 BMMs were incubated with those in the presence of M-CSF (30 ng/ml) and polybrene 50 (10 μg/mL) for 8 h. For the osteoclast formation assay, BMMs were treated with 51 RANKL (10 ng/ml), M-CSF (30 ng/ml) and praeruptorin A (10 μM) for 4 days. 52 53 Western blot analysis 54 Cytoplasmic or nuclear protein fractions were prepared using a NucBuster Protein 55 Extraction kit (Novagen, Germany). After protein quantification, Western blot analysis 56 was performed as described in ‘Material and Methods’. Antibodies against p-IκBα, 57 IκBα and NF-κB/p65 were purchased from Santa Cruz Biotechnology (CA). Antibody 58 against Lamin B1 was obtained from AbFrontier (Seoul, Korea). Lamin B1 was used 59 for the loading control of nuclear proteins. 60 61 Statistical analysis 62 All quantitative values are presented as mean ± SD. Statistical differences were 63 analyzed using Student’s t-test. A value of p < 0.05 was considered significant. 64 65 66 67 68 69 70 71 72 3 73 Supporting Information Legends 74 Figure S1. Effect of praeruptorin A on cell spreading during RANKL-induced 75 osteoclast differentiation. BMMs (1 104 cells/well) were seeded in a 96-well plate, 76 treated with the vehicle (0.1% DMSO) or praeruptorin A (10 μM) for 2 h in the 77 presence of M-CSF (30 ng/ml), and incubated with RANKL (10 ng/ml) for 1 and 3 days. 78 Then, cells were fixed, permeabilized, washed, and incubated with 10 μg/ml Hoechst 79 33342. 80 81 Figure S2. Effect of praeruptorin A on RANKL-induced osteoclast differentiation for 82 the indicated periods. BMMs were cultured with praeruptorin A (10 M) for various 83 times periods (indicated the black arrow) in the presence of M-CSF and RANKL. After 84 TRAP staining, TRAP-positive multinuclear cells (MNCs; nuclear number > 3) were 85 counted *, P < 0.05; **, P < 0.01; *** P < 0.001. 86 87 Figure S3. Effect of praeruptorin A on the formation of actin rings during osteoclast 88 differentiation. BMMs (1 104 cells/well) were seeded in a 96-well plate, treated with 89 the vehicle (0.1% DMSO) or praeruptorin A (10 μM) for 2 h in the presence of M-CSF 90 (30 ng/ml), and incubated with RANKL (10 ng/ml) for 4 days. Then, cells were fixed, 91 permeabilized, washed, and stained with Hoechst 33342 and phalloidin-FITC for 92 nucleus and actin rings, respectively. 93 94 Figure S4. (A) Effect of age, strain or sex on anti-osteoclastogenic action of 95 praeruptorin A. BMMs were isolated from mice (male and female ICR strain, 5-week 96 old; male and female C57BL6/N strain, 5-week old and 8-month old) and cultured with 4 97 praeruptorin A in the presence of M-CSF and RANKL for 4 days. Osteoclast 98 differentiation was visualized by TRAP staining. (B) Effect of age, strain or sex on anti- 99 osteoclastogenic action of praeruptorin A. BMMs were isolated from mice (male and 100 female ICR strain, 5-week old; male and female C57BL6/N strain, 5-week old and 8- 101 month old) and cultured with praeruptorin A in the presence of M-CSF and RANKL for 102 4 days. After TRAP staining, TRAP-positive multinuclear cells (MNCs; nuclear number 103 > 3) were counted. TRAP activity and cell viability were also evaluated. *, P < 0.05; **, 104 P < 0.01; *** P < 0.001. 105 106 Figure S5. Anti-resorptive activity of praeruptorin A. (A) After co-culturing BMMs 107 with osteoblasts for 7 days, multinucleated osteoclasts were replated on BioCoat 108 Osteologic MultiTest slides and after 2 h incubation, cells were further incubated with 109 praeruptorin A and RANKL for 6 h. Then, cells were stained for TRAP (upper images). 110 (B) TRAP-positive multinucleated cells were counted. (C) After removing cells, the 111 resorption pits (indicated by asterisks in bottom images) were observed under a light 112 microscope. The relative resorbing areas were evaluated using the ImageJ program. *** 113 P < 0.001 114 115 Figure S6. Effect of c-Fos on anti-osteoclastogenic action of praeruptorin A. BMMs 116 were infected with retroviruses harboring the control GFP or c-Fos-GFP vectors. 117 Transduced BMMs were cultured with RANKL (10 ng/ml) and M-CSF (30 ng/ml) in 118 the presence of praeruptorin A (10 μM) or the vehicle (0.1% DMSO). (A) After 119 incubation for 2 days, GFP expression was visualized under a fluorescence microscope 120 (left images). After 2 additional days, mature TRAP-positive multinucleated osteoclasts 5 121 were visualized by TRAP staining (middle and right images). TRAP-positive cells 122 (nuclear number > 3) were counted as osteoclasts (B), and TRAP activity was measured 123 at 405 nm (C). *, P < 0.05; **, P < 0.01; *** P < 0.001 124 125 Figure S7. Effect of praeruptorin A on RANKL-induced activation of NF-κB signaling 126 pathway. BMMs were treated with praeruptorin A (10 μM) for 30 min, stimulated with 127 RANKL (10 ng/ml) for the indicated time. The expression levels of molecules in 128 cytoplasmic or nuclear protein fractions were evaluated by Western blot analysis. Actin 129 and lamin B1 were used for the loading control of cytosolic and nuclear proteins, 130 respectively. Densitometric analysis was performed using ImageJ software and the 131 relative, normalized ratios of IB/actin, p-IB/actin, cytosolic p65/actin or nuclear 132 p65/lamin B1 were presented. 6