Establishment of a screening service for Bethlem Myopathy and Ullrich Congenital Muscular Dystrophy Tom Cullup Guy’s Hospital DNA Laboratory Introduction • UCMD and BM – Phenotypes – The Collagen VI genes • Testing Strategy • Initial Results • Discussion on cDNA sequencing UCMD and BM UCMD Ullrich Congenital Muscular Dystrophy BM Bethlem Myopathy Inheritance: AR (AD) Inheritance: AD Symptoms: Muscle weakness Proximal joint contractures Hyperelasticity of distal joints Walking never achieved Death from respiratory failure Symptoms: Hypotonia Delayed motor milestones Weakness Muscle atrophy Contractures (temporary/permanent) Differential diagnosis: Other CMDs/Myopathies SMA Ehlers Danlos Syndrome Marfan Syndrome Differential diagnosis: Sarcoglycanopathies Calpainopathy Dysferlinopathy XL/AD Emery Dreyfus MD Collagen VI • Heterotrimeric • Extracellular matrix protein • Genes: – – – – COL6A1/COL6A2/COL6A3 Similar structure COL6A1 and COL6A2: 21q22.3 (head to tail) COL6A3: 2q37 Gene Exons Amino Acids COL6A1 35 1028 COL6A2 28 1019 COL6A3 44 (43) 3177 Total 107 5224 Cys vWF A TH α1 α2 α3 Fibronectin type III motif Kunitz Protease inhibitor motif Macromolecular Structure • Assembly of Collagen VI multi-step process: 1. 2. 3. • Assembly of triple-helical monomer (1 x α1, α2, α3) 2 x monomers assemble into antiparallel dimers 2 x dimers align to form tetramers Cysteine residues in all 3 chains thought to be involved in dimer/tetramer formation/stability Testing Strategy • Options: – Pre-screen (TGCE) + genomic seq – Genomic seq (+ dosage assay) – cDNA seq • cDNA seq: – Should pick up same mutations as genomic seq + demonstrates splice + large del/dup – Potential to reduce sequencing load • Genomic: 107 fragments • cDNA: 26 fragments Practical Overview Extraction AAA Col6a1 AAA Col6a2 AAA Fibroblast sample Reverse Transcription cDNA Col6a3 mRNA Overlapping 1°PCR primers Tagged, nested 2°PCR primers 2°PCR Fragments Sequenced F+R Using Tag primers Initial Screen Results • Initial cohort: 16 patients • 14 have definite pathogenic mutations • 87.5% pick-up (previous studies: 62%) • Why so high? – Patient selection • Phenotype screened by Hammersmith • Immunohistochemical analysis – Screening strategy • 1 patient with het del – no confirmed DNA change • 1 patient with -10 change causing splicing defect - ? Classed as mutation if only seen on DNA Deletion of Ex10 (COL6A2) at the RNA level No definitive change at DNA level - ?mosaic splicing mutation Results Interpretation • Large proportion of heterozygous mutations for UCMD cases (8 het vs 5 hom) – Previously thought of as AR – UCMD/BM now thought of as continuous phenotypic spectrum – Location of mutations as well as mutation type important Het In-frame del/splice Het missense (TH Glycine residues) Hom In-frame del/splice Hom Out-of-frame del/splice Hom missense N C vWFA TH vWFA FIII KPI Theories on genotype-phenotype correlation • “Classical” UCMD: – 2 x PTC mutations → No functional protein • “Classical” BM: – 1 x Missense/in-frame del/splice → Weak dom-neg effect • Glycine missense in TH domain: – Evidence that N-term Glycine changes cause ‘kinking’ of tetramers → dominant neg effect – Only 1 example of hom glycine change • Het del/splice: – Similar effect to Glycine missense – Preservation of Cys residue allows secretion of abnormal tetramers → dom neg effects on microfibrillar assembly Benefits and drawbacks of cDNA sequencing • Benefits: – Smaller number of fragments to sequence – Demonstrates splicing mutations – Shows large rearrangements • Drawbacks – RNA unstable – Alternative splicing – Does not fit into lab high-throughput processes – Checking overlapping fragments Acknowledgments • Guy’s DNA lab: – Michael Yau – Steve Abbs • Hammersmith Neuromuscular unit: – Prof. Francesco Muntoni – Cecilia Jimenez-Mallebrera – Lucy Feng