Combining 2 Powerful Technologies to Enable Further Discovery in Bacterial Studies Study Flow Direct Absolute Count (NovoCyte) Number of Bacteria (Titer) Infection of Cells of Interest with Certain Amount of Bacteria Monitoring of Cell Index Changes of Target Cells to Assess Bacteria Mediated Cytotoxic Effects (xCelligence) 2 Bacterial Count with NovoCyte Significance of Bacterial Count • Food manufacturers – Required by regulatory authorities e.g. FDA to monitor the number and type of bacteria in their products – Beer and wine companies monitor the growth of yeast in their distilling process • Environmental concerns – Water treatment plants monitor the effectiveness of their sterilization process • Biotechnology firms – Closely regulate bacterial growth to produce useful pharmaceutical products • Clinical laboratories – Monitor the growth rate of bacteria from patients to determine their antimicrobial sensitivity 4 How to Count Bacteria with Precision • By dilution and plating – Dead bacteria do not form colonies. Some bacteria occur as single cells while other species hang together in chains or clumps of 2 or more baceteria • Counting chambers – Consist of a special microscope slide with a coverglass – Can't tell which bacteria are alive thus this method is useless in disinfection studies • Membrane filters – Huge volumes of liquid (e.g. water) can be filtered to show a few bacteria per liter – Filter can be rinsed with sterile water to remove anything that could potentially interfere with bacterial growth • Photometers and spectrometers – Efficient, no need to wait overnight for the colonies on the agar plates 5 Direct Absolute Counting using NovoCyte • Syringe Pump Fluidics o Direct absolute cell/particle counts 6 Direct Absolute Counting: NovoCyte vs Others Competitor's Flow Cytometer with Reference Beads ACEA Novocyte (Volumetric) Total lymphocyte CD3+ /ul Sample 1 1937 1435 QC Blood Sample 2 1570 1160 404 Sample 3 1605 1175 408 Sample 4 846 634 Sample 5 886 605 297 Sample 6 1710 888 288 Fresh Blood CD3+CD8+ CD3+CD4+ Total /ul /ul lymphocyte CD3+ /ul CD3+CD8+ CD3+CD4+ /ul /ul 2057 1492 676 1563 1146 406 669 685 1558 1153 405 676 902 659 279 925 619 296 286 578 1779 913 294 597 Absolute Counting: NovoCyte vs Others (Cont’d) 2300.00 2100.00 1900.00 1700.00 1500.00 1300.00 1100.00 900.00 700.00 500.00 500.00 Competitor’s Flow Cytometer Competitor’s Flow Cytometer 1700.00 y = 1.0179x + 12.705 R² = 0.9843 1000.00 1500.00 2000.00 1500.00 1300.00 1100.00 900.00 700.00 500.00 500.00 2500.00 y = 1.0051x + 9.1898 R² = 0.9925 700.00 ACEA NovoCyte(Total lymphocyte) 900.00 1100.00 1300.00 1500.00 ACEA NovoCyte(CD3+) 430.00 410.00 390.00 370.00 350.00 330.00 310.00 290.00 270.00 250.00 250.00 Competitor’s Flow Cytometer Competitor’s Flow Cytometer 800.00 y = 0.9709x + 11.179 R² = 0.9977 300.00 350.00 400.00 ACEA NovoCyte(CD3+CD8+) 450.00 y = 0.9662x + 21.106 R² = 0.9962 700.00 600.00 500.00 400.00 300.00 200.00 200.00 300.00 400.00 500.00 600.00 700.00 800.00 ACEA NovoCyte(CD3+CD4+) 8 Direct Absolute Counting of E. Coli with NovoCyte 1:1000 Dilution Experiment Settings: FSC-H Threshold: 2000 Volume: 30uL Sample Flow Rate: 14uL/min 1:10000 Dilution Sample Count in Gate P1 Abs. Count (/uL) 1:1000 1:10000 135,727 15,529 4,524 518 Advantages of Direct Absolute Bacterial Counting with NovoCyte o Low CV’s (±2%) o High accuracy (±5%) o Provides consistent results between sample runs o Automatic cleaning (low carry over of <0.1%) o “Plug-and-play” operation o Efficient, up to 20,000 events/sec 10 Bacteria Mediated Cytotoxicity (xCelligence) Bacteria mediated toxicity • Direct damage – Results from the means of a bacteria utilizes to adhere to host, grow and evade host defences – Usually the more minor form of bacteria mediated toxicity • Hypersensitivity reactions – An immune response that is excessive to a point where it leads to damage (as with endotoxins) or is potentially damaging to the individual host • Toxin-induced damage – About 220 bacterial toxins are known of which 40% disrupt plasma membranes – Exotoxins, endotoxins 12 Bacterial Assays • Bacterial agglutination – Commonly used to identify specific bacterial antigens, and in turn, the identity of such bacteria – Important technique in diagnosis • Bacterial count assays (please refer to the previous section) – Absolute direct count using our NovoCyte • Conventional asssys for bacterial-mediated cytotoxicity (e.g. manual cell count with Trypan blue, MTT, release of LDH, ATP assay, microscopic analysis) 13 Bacteria species validated on xCelligence system • Clostridium difficile • Bacillus • Vibrio cholera • Vibrio vulnificus • Neisseria meningitidis 14 Study One 15 Responses of four cell lines to Vibrio cholerae toxin 16 Analytical sensitivity of CT diluted with pooled negative stool specimens 17 Representative CT-RTCA results for isolates and clinical specimens 18 Study Two 19 RtxA1 causes acute necrotic cell death 20 Summary – Key Benefits of xCelligence • A simple alternative to traditional methods for measuring bacteria mediated cytotoxicity • Sensitive readout on cell mophology and adhesion changes in response to bacterial infection • Quantitative monitoring of onset and kinetics of bacterial mediated effects in real time for up to hundreds hours • Indentify the optimal bacterial titer and assay time point for subsequent screening of inhibitory compounds, neutralizing antibodies or neutralizing serums. • No labelling of cells or bacteria required • No post-experiment cell handling, sample preparation, or data collection (infect and walk away!) 21 Publication list 1. Real-time cellular analysis coupled with a specimen enrichment accurately detects and quantifies Clostridium difficile toxins in stool. Huang, B., Jin, D., Zhang, J., Sun, J. Y., Wang, X., Stiles, J., Xu, X., et al. (2014).Journal of clinical microbiology, 1(January). doi:10.1128/JCM.02601-13 2. In vitro assessment of marine bacillus for use as livestock probiotics. Prieto, M. L., O’Sullivan, L., Tan, S. P., McLoughlin, P., Hughes, H., Gutierrez, M., Lane, J. a, et al. (2014).Marine drugs, 12(5), 2422–45. doi:10.3390/md12052422 3. Quantitative Detection of Vibrio cholera Toxin by Real-Time and Dynamic Cell Cytotoxicity Monitoring. Jin, D., Luo, Y., Zheng, M., Li, H., Zhang, J., Stampfl, M., Xu, X., et al. (2013).Journal of clinical microbiology. doi:10.1128/JCM.01959-13 4. A bacterial RTX toxin causes programmed necrotic cell death through calcium-mediated mitochondrial dysfunction. Kim, Y. R., Lee, S. E., Kang, I.-C., Nam, K. Il, Choy, H. E., & Rhee, J. H. (2013).The Journal of infectious diseases, 207(9), 1406–15. doi:10.1093/infdis/jis746 5. Real-time impedance analysis of host cell response to meningococcal infection. Slanina, H., König, a, Claus, H., Frosch, M., & Schubert-Unkmeir, a. (2011).Journal of microbiological methods, 84(1), 101–8. doi:10.1016/j.mimet.2010.11.004 6. Assessment of Clostridium difficile infections by quantitative detection of tcdB toxin by use of a real-time cell analysis system. Ryder, A. B., Huang, Y., Li, H., Zheng, M., Wang, X., Stratton, C. W., Xu, X., et al. (2010).Journal of clinical microbiology, 48(11), 4129–34. doi:10.1128/JCM.01104-10 7. Neisseria meningitidis induces brain microvascular endothelial cell detachment from the matrix and cleavage of occludin: a role for MMP-8. Schubert-Unkmeir, A., Konrad, C., Slanina, H., Czapek, F., Hebling, S., & Frosch, M. (2010).PLoS pathogens, 6(4), e1000874. doi:10.1371/journal.ppat.1000874 8. An ultrasensitive rapid immunocytotoxicity assay for detecting Clostridium difficile toxins. He, X., Wang, J., Steele, J., Sun, X., Nie, W., Tzipori, S., & Feng, H. (2009).Journal of microbiological methods, 78(1), 97–100. doi:10.1016/j.mimet.2009.04.007 22 Appendix: Facts About Bacteria 23 Bacteria - Basic Facts • Prokaryotic microorganisms typically a few microns in length • 40 million bacterial cells in a gram of soil and a million in a millilitre of fresh water • Have a number of shapes, ranging from spheres (cocci) to rods (bacilli or vibrio for slightly curved rods or comma-shaped) and spirals (spirilla or spirocchaetes) • Many exist as single cells, others associate in characteristic patterns – Neisseria form diploids (pairs) – Staphylococcus group together in “bunch of grapes” clusters – Actinobacteria can be elongated to form filaments and are often surrounded by a sheath that contains many individual cells. E.g. Nocardia form complex branched filaments similar in appearance to some fungal mycelia 24 Bacteria – Cellular Structures • Extracellular – Cell wall present on the outside of the cytoplasmic membrane – Consists of peptidoglycan – Essential to survival and the antibiotic penicillin kills the bacteria by inhibiting the synthesis of peptidoglycan – Gram-positive (thick cell wall) vs Gram-negative (thin cell wall) • Intracellular – Usually no membrane-bound organelles (e.g lack of true nucleus, mitochondria, chloroplasts) – A single circular chromosome located in the cytoplasm in an irregularly shaped body called the nucleoid – Micro-compartments (e.g. carboxysomes, magnetosomes) 25 Bacteria - Biofilms & Quorum Sensing • Often attach to surfaces and form biofilms. • Bacteria living in biofilms form secondary structures such as micocolonies to enable better diffusion of nutrients. • Common in natural environments (e.g. soil, surfaces of plants) and during chronic bacterial infections or infections of implanted medical devices • Bacteria protected within biofilms are much harder to kill than individual isolated baceteria • In more harsh conditions (e.g. starved of amino acids), they would detect surrounding cells and migrate toward each other (quorum sensing), and aggregate to form fruiting bodies where they cooperate to perform separate tasks 26