Ra#onal engineering of molecular excited states: towards novel indicators for high-­‐resolu#on imaging in cells RANIERI BIZZARRI NEST, SCUOLA NORMALE SUPERIORE AND NANOSCIENCE INSTITUTE – CNR PISA, ITALY SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 LOOKING AT CELL BIOCHEMISTRY Fluorescence Microscopy Ø Poorly invasive Ø High sensitivity (down to single molecule) Ø High spatial resolution (≤250 nm...see Superresolution talks...) Ø High temporal resolution (down to 1 ms) Ø Sensing Ø Fluorophore makes the difference SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 FLUORESCENCE heat excitation 0.1-1 fs 0.01-0.1 ns 0.1-10 ns emission Stokes’ shift: sensitivity heat F = η ⋅ ϕ (λem )⋅ ε (λex )⋅ [ I 0 ⋅ C ] Cuve%e F = η ⋅ ϕ (λem )⋅ ε (λex )⋅ [ I(x, y, z) ⊗ C(x, y, z)] SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 Microscope FLUORESCENCE READ-OUTS Ø Intensity Ø Wavelength (emission/excitation) Ø Lifetime Ø Depolarization (anisotropy) 14000 2000 Fluorescence emission Fluorescence (counts) 12000 Monoexponential fit Instrument response function 10000 1500 8000 1000 6000 4000 500 2000 0 0 0 1 2 3 4 5 6 7 8 9 10 Time (ns) SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 INTENSITY: CONCENTRATION OR INTRINSIC BRIGHTNESS ☞ Two configurations are possible ☞ Concentrantions in cells can not be determined SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 RATIOMETRIC APPROACH: WAVELENGTH SHIFT 60x103 55 Extinction Coefficient (M-1·cm-1) 50 5.0 5.5 6.0 6.5 7.0 7.5 8.0 45 40 35 30 25 20 15 10 5 0 325 350 375 400 425 450 475 500 525 550 Wavelength (nm) Fluorescence from state 1 S1/S2 Ratio image, concentrationindependent SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 Fluorescence from state 2 (anticorrelated) FLUORESCENCE LIFETIME: RATIOMETRIC 14000 2000 Fluorescence emission Fluorescence (counts) 12000 Monoexponential fit Instrument response function 10000 1500 8000 1000 6000 & t ) F(t) = ∑α exp( − + ' τ * 4000 i i i 500 2000 0 0 1 2 3 € 0 4 5 Time (ns) ☞ Concentration-independent ☞ Intrinsecally ratiometric SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 6 7 8 9 10 FLUORESCENCE: A WONDERFUL MOLECULAR STOPWATCH heat excitation 0.1-1 fs heat 0.01-0.1 ns OF Stokes’ shift: sensitivity Processes at excited state Probing the properties of the nanoenvironment Polarity Viscosity SIOF SCHOOL 0.1-10 ns emission PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 Controlling the photophysical state of the molecule Photochromism FRET Depletion ENVIRONMENTAL • POLARITY • VISCOSITY SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 SENSITIVITY WHAT SIOF SCHOOL OF IS POLARITY? PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 +++++ ++ SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 SOLVATOCHROMIC FLUOROPHORES Ø Push-pull aromatic system e-­‐ Electron-donor unit SIOF SCHOOL OF Aromatic/polyenic spacer PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 Electron-Acceptor unit ORIGIN Ø OF SOLVATOCHROMISM: SOLVENT RELAXATION If the dipole moment in the excited state changes compared to the ground state, there will be rearrangement of polar molecules around the excited molecule tr Figure credit: J. Lakowicz, “Principles of Fluorescence Spectroscopy” SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 WHY SIOF SCHOOL OF LOOK AT PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 POLARITY? SOLVATOCHROMIC PROBES: APPLICATIONS IN CELLS Ø Sensor of endogeneous biomolecules Figure credit: P. Nalbant, Science 2004 SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 SOLVATOCHROMIC PROBES: IN VITRO APPLICATIONS Figure credit: G. S. Loving, Trends in Biotechnology 2011 SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 MOLECULAR ROTORS & VISCOSITY SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 MOLECULAR TWISTING ☞ Some molecules undergo structural twisting at excited state SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 PHOTOPHYSICS OF + MOLECULAR ROTORS -­‐ Locally excited (LE) state (planar) kr= radiative rate constant kd= non-radiative rate constant krot= twisting rate constant krot -­‐ + * Twisted excited state (TS) kr(LE) kd(LE) kd(TS) Ground state (planar) SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 DEPENDENCE ON ! VS $ η = η0 exp # & " Vc % " Vs % knr = k exp $ −x ' # Vc & 0 nr SIOF SCHOOL OF LOCAL VISCOSITY $ V Φ k = exp&& x 1− Φ k % V nr 0 0 nr PHOTONICS € , MARCH 31ST-APRIL 3RD, 2014 f ' )) = aη ( x logΦ ≅ x log η + a log τ ≅ x log η + b WHY SIOF SCHOOL OF LOOK AT VISCOSITY? PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 VISCOSITY IN CELL ENVIRONMENTS 1 −ΔH k∝ e η RT Ø Molecular diffusion is a rate-­‐limi8ng step in many metabolic reac8ons and it is Influenced by factors including viscosity of intracellular media Ø Viscosity is probed by diffusion of molecules or by direct imaging SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 EXPLOITING NATURE POLARITY & VISCOSITY COMBO-PROBE SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 INSPIRED BY NATURE: FLUORESCENT PROTEIN All fluorescence information is STORED in the gene/primary sequence of the protein SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 GENETIC ENCODING Ø Ø OF FLUORESCENCE Almost any protein can be stained Usually no interference with biological processes SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 From “Scholarpedia” GFP CHROMOPHORE: ENVIRONMENTAL SENSITIVE Ø GFP chromophore is fairly sensitive to its immediate environment O N HO N GFP Figure credit: G. Patterson, J. Cell Sci. 2001 SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 YFP GFP CHROMOPHORE: POOR EMISSION Ø FP chromophore is non fluorescent in water or organic solution on account of fast twisting at excited state O HO N N * Δ OH TRANS hν Δ O Δ O N N N N HO CIS G. Abbandonato et al. Eur. Biophys. J. 2011 V. Voliani et al. J. Phys. Chem. B 2008 SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 Figure credit: S. Olsen, JACS 2010 BIOCONJUGABLE GE1 FLUOROPHORE O N HO N O X HO N * N O X = N, O X Ar (Push)Pull Ø Ø Push(Pull) Biofunctional group Fairly high changes in dipole moment upon excitation (8÷10 D) Biofunctional group allows for bioconjugation G. Signore et al. Chem Comm 2013 SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 SPECTRA OF GE1 IN SOLVENTS CCl4 DMSO O O H3CO O H3CO Ø Ø Excitation at 405-458 nm, QY from 0.8 to 0.2 Peak red-shift upon increase of environmental polarity SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 OCH3 FS-SCALE TRANSIENT SPECTRA ☞ Solvent rearrangement takes place within 50 ps 0.5 is os be s tic point a t 5 7 0 nm -­‐0.5 Δ T /T (% ) 0.0 -­‐1.0 -­‐1.5 DMF: polar solvent in D MF , no s olve nt c orre c tion -­‐2.0 400 500 600 700 W a v e le ng th (nm ) In collaboration with Dario Polli and Giulio Cerullo, Polytechnic of Milan SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 800 2 0 0 3 2 0 5 6 0 7 4 0 9 2 0 1 2 2 0 1 5 2 0 1 8 2 0 2 2 0 0 2 6 0 0 3 2 0 0 5 2 0 0 1 0 2 0 0 2 0 2 0 0 5 0 8 0 0 SPECTRA OF GE1 IN SOLVENTS CCl4 DMSO O O H3CO O H3CO Ø GP is concentration independent: fluorophores suitable for intracellular ratiometric measurements SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 GP = OCH3 F480−525 − F540−580 F480−525 + F540−580 DEPENDENCE FROM DIELECTRIC CONSTANT 0.6 F GP = F 0.5 480 − 525 Generalized Polarization 0.4 480 − 525 −F +F 540 − 580 = a + b log(ε ) 540 − 580 0.3 0.2 0.1 € 0.0 -0.1 -0.2 -0.3 -0.4 -0.5 -0.6 0.4 0.6 0.8 1.0 log(ε) SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 1.2 1.4 1.6 1.8 VISCOSITY DEPENDENCE OF LIFETIME increasing viscosity Ø Lifetime of Ge1 is viscosity-dependent SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 FORSTER-HOFFMANN RELATIONSHIP Ø Slope of viscosiity-dependence is nearly independent of GP (dielectric constant): universal calibration SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 WORKING MODEL OF GE1 PHOTOPHYSICS * E Viscosity dependent * Solvent relaxation 50 ps knr * kr k’nr Very fast <ps SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 twisted state LET’S SIOF SCHOOL OF GO IN VIVO... PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 INTRACELLULAR MAPS OF e Ø <e>(ER)=7.4!0.2 (15 cells) Ø <e>(NE)=7.5!0.5 (13 cells) ☞ First determination of NE/ER permittivity SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 TARGETING SPECIFICALLY CELL MEMBRANE Fluorogenic/rotor unit Membrane targe8ng unit G. Signore et al. Chem Comm 2013 SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 POLARITY PROPERTIES OF CELL MEMBRANE N=12 Ø Ø Ø <e>(PM)=10.6!1.8 (25 cells) Literature: e=9-11 Intermediate between Ld and Lo ☞ Dielectric value is relevant to determine capacitance ☞ Correlation with proteins SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 DRUG DELIVERY ☞ ☞ VIA CELL PENENTRATING PEPTIDES CPPs are positively-charged peptides that are known to cross cell membrane and may thereby deliver biomolecules Much effort in developing new delivery routes Figure credit: G. Divita, CRBM, France; S. Fonseca, Adv. Drug Del. Rev. 2009 SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 TRASACTIVATOR ☞ OF HIV (TAT) Tat peptide is by far the most studied CPP Figure credit: E. Vives, J. Control. Release 2005 SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 PROMOTING ENDOSOMAL ESCAPE CPP (Tat) TAT Membrane destabilizing agent SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 Payload (fluorophore) POLARITY PROPERTIES Polarity-­‐sensi8ve dye OF ENDOCYTIC VESICLE Tat-­‐Alexa647 Colocaliza8on map SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 MEMBRANE ORGANIZATION Ø Old fluid-mosaic model SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 MEMBRANE ORGANIZATION Ø Compartimentalization model SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 MODELING CELL MEMBRANE ☞ Incorporation of the polarity-sensitive probe in model membranes O O O O O N H O O O P O O O OH O H3CO S0 DPPC SIOF SCHOOL OF Ld POPC POPC/POPE POPC/POPS POPC/Chol PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 Lo DPPC7/Chol3 Counts PHASE ORDER 10 4 10 3 10 2 GE1L CHCl3 DPPC, Lβ phase DPPC/Chol 70/30, Lο phase POPC, Lα phase < τ > = 2.95 ns (1.84;3.39) < τ > = 5.81 ns (2.88;6.09) < τ > = 1.20 ns (0.7;2.27) 10 1 < τ > = 4.45 ns (2.57;5.15) 10 0 0 5 10 15 20 25 30 Time (ns) SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 35 40 45 50 55 PHASOR APPROACH TO LIFETIME IMAGING SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 FLUORESCENCE LIFETIME IMAGING: CHALLENGES Each pixel i,j Fi, j (t) = ∑ Ak exp(−t τ k ) k CHALLENGES OF FLIM ☞ At every pixel there are contributions by several species, and each one could be multiexponential ☞ To make things worse, we can collect light only for a limited amount of time which results in 500-1000 photon/pixel: this is barely enough to distinguish a single exponential from a double exponential ☞ Analysis require global fitting procedures and high computational power SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 A NEW FLIM APPROACH: PHASOR PLOT Each pixel i,j g (ω ) = ∫I s (ω ) = ∫I i ,j i ,j € i ,j i ,j i ,j k k mon si,j k g (ω ) = 1 1+ (ωτ ) s (ω ) = ωτ 1+ (ωτ ) i ,j ial t n e on oexp g (ω ) = ∑ i ,j k ntial e n o p x e multi s (ω ) = ∑ i ,j SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 gi,j € k i ,j (t)dt (t)dt 2 si,2 j + (gi, j −1 2)2 = (1 2 ) € i ,j 2 € € (1/2,0) ∫I (t)sin(ωt)dt i ,j € I (t) = ∑ A exp(−t τ ) ∫I (t)cos(ωt)dt f 1+ (ωτ 2 k f ωτ 1+ (ωτ k k ) 2 k k ) 2 M. Digman & E. Gratton et al. Biophys. J. 2008 € PHASOR PLOT: TWO-STATE SYSTEMS Each pixel i,j g (ω ) = ∫I s (ω ) = ∫I i ,j i ,j € i ,j i ,j (t)cos(ωt)dt (t)sin(ωt)dt ∫I ∫I i ,j i ,j (t)dt (t)dt € I (t) = ∑ A exp(−t τ ) i ,j k k k Any mixture lays on the segment joining A and B phasors and allows for quantification si,j € A (1/2,0) SIOF SCHOOL OF B PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 gi,j PHASOR PLOT: DETERMINING MEMBRANE ORDER Ø Quan7fica7on of membrane order si,j Lo Ld gi,j SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 PHOTOCHROMISM SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 FLUORESCENCE: A WONDERFUL MOLECULAR STOPWATCH heat excitation 0.1-1 fs heat 0.01-0.1 ns OF Stokes’ shift: sensitivity Processes at excited state Probing the properties of the nanoenvironment Polarity Viscosity SIOF SCHOOL 0.1-10 ns emission PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 Controlling the photophysical state of the molecule Photochromism FRET Depletion PHOTOACTIVATABLE FLUORESCENT PROTEINS Ø ADDING AN INTERNAL TEMPORAL DIMENSION Ø New tracking strategies Ø Innovative FRET patterns Ø Superresolution imaging SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 RELEVANCE OF RSFPS Ø They provide a further (temporal) dimension to fluorescence read-outs Ø RESOLFT concept SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 PHOTOACTIVATABLE FLUORESCENT PROTEINS G. Patterson, Science, 2002 SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 PHOTOACTIVATABLE FLUORESCENT PROTEINS G. Patterson, Science, 2002 SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 REVERSIBLE PHOTOSWITCHING R.A.G. Cinelli, Appl Phys Lett, 2001 S. Habuchi, PNAS, 2005 SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 GFP CHROMOPHORE: POOR EMISSION Ø FP chromophore is non fluorescent in water or organic solution on account of fast twisting at excited state O HO N N * Δ OH TRANS hν Δ O Δ O N N N N HO CIS Figure credit: S. Olsen, JACS 2010 G. Abbandonato et al. Eur. Biophys. J. 2011 V. Voliani et al. J. Phys. Chem. B 2008 SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 CIS-TRANS PHOTOISOMERIZATION OF CHROMOPHORE HO dN = I ⋅σ ⋅ϕ dt O N j = switching yield (1/ absorbed photons to trigger isomerization) N jon joff trans Y 66 chrom ophore h! h!', " Ø Fundamental condition: (joff, jon) >> jbl O Ø Number of cycles ≈ jon(off) / jbl N N jbl HO Ø FPs: jbl ~ 10-6÷10-5 Ø Y66 Chro: joff, jon ~ 10-1 ÷ 1 V. Voliani, J Phys Chem, 2008 cis Y 66 chrom ophore R. Nifosì, J Phys Chem, 2003 SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 RATIONAL APPROACH TO PHOTOSWITCHING 1. Residues around chromophore must play a role in hampering the intrinsical photochromism of GFP chromophore 2. Looking for residues that take part in the photophysics of the chromophore Glutamic acid 222 SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 E222: A SPECIAL RESIDUE IN GFP PHOTOPHYSICS 4.65 Å 2.66 Å K. Brejc, PNAS, 1997 R. Bizzarri et al. Biochemistry, 2007 G. Jung et al. Micr Res Tech, 2006 SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 E222Q: INDUCING PHOTOSWITCHING IN GFPS R. Bizzarri, JACS, 2010 SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 SCHEME OF PHOTOISOMERIZATION Preconversion, Preconversion, p H 7 .7 Preconversion, ppH H 77.7 .7 Postconversion, Postconversion, p pH H 7 7.7 .7 pH pH JJump, ump, p pH H 9 9.6 .6 Relaxed, pH 9.6 R. Bizzarri, J. Am. Chem. Soc, 2010 S. Abbruzzetti, Photochem Photobiol Sci 2011 SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 SCHEME OF PHOTOISOMERIZATION N pK t= 9.38 (M ut2Q ) pK t= 9.87 (E Y Q 1) O N + H 0.1-1 m s N O N OH O Bt At !, very slow (hours) 0.1-1 m s N ! 25"40 s h#' pK= 6 (M ut2Q ) O H pK= 6.87 (E Y Q 1) O N h# O N O N A B ü joff ≈ 10-4÷10-3 jon≈ 10-3÷10-2 R. Bizzarri, J. Am. Chem. Soc, 2010 S. Abbruzzetti, Photochem Photobiol Sci 2011 SIOF SCHOOL OF Ø Yellow: T203Y/E222Q (EYQ1), S65T/ T203Y/E222Q (EYQ2) Ø Green: S65T/E222Q (EQ1), E222Q (Q1) PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 E222Q: TARGETED PHOTOSWITCHING TRPV1-E222Q In collaboration with Prof. Alberto Diaspro and Dr. Francesca Cella – IIT Nanophysics ☞ fatigue: 3-4% (max 100 cycles) B. Storti et al., J. Biol. Chem, 2012 SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 ☞ Functional imaging TRPV1-mTUBULE INTERACTIONS: OLID-FRET ☞ OLID: Optical Lock-In Detection [G. Marriott et al., PNAS, 2008] ☞ Excellent for FRET where D or A is photochromic ρ ( x,y ) = ∑ t {I(x,y,t ) − µI }{R(t ) − µR } σ Iσ R ☞ R(t) is the “reference” waveform EYQ1 TagRFP (Evrogen) B. Storti et al., J. Biol. Chem, 2012 SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 TRPV1-mTUBULE INTERACTIONS: OLID-FRET Donor channel (520-530) FRET channel (640-720 nm) OLID Image (FRET) ρ ( x,y ) = ∑ t {I(x,y,t ) − µI }{R(t ) − µR } σ Iσ R G. Abbandonato et al., 2012 SIOF SCHOOL OF PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 Gerardo Abbandonato Alberto Diaspro Fabio Beltram Francesco Cardarelli Barbara Stor. Giovanni Signore Enrico GraCon Vinod Subramanian SIOF SCHOOL OF Cris7ano Viappiani PHOTONICS, MARCH 31ST-APRIL 3RD, 2014 Paolo Bianchini