Uploaded by charupriya.27771

s10681-024-03300-x

advertisement
Euphytica
(2024) 220:42
https://doi.org/10.1007/s10681-024-03300-x
REVIEW
A comprehensive review on speed breeding methods
and applications
Nischay Chaudhary · Rubby Sandhu
Received: 23 May 2023 / Accepted: 21 January 2024
© The Author(s), under exclusive licence to Springer Nature B.V. 2024
Abstract To meet the rising requirement for food
production, by 2050, it is necessary to increase global
production two-fold, necessitating the growth of new
crop varieties. However, this process is time-consuming, largely determined by the crop’s generation
period. To address this challenge, Speed Breeding
(SB) technology leverages controlled environmental
conditions to accelerate plant development, allowing
for the multiplication of many generations per year.
SB also allows for the integration of advanced protocols such as gene editing, phenotyping, and genotyping accelerating crop improvement. SB has been
effectively applied to various crops, including cereals,
pulses and canola crops, producing 4–6 generations
in a year. With its application to a wide range of crops
and lower labor requirements than breeding methods,
SB offers a practical and efficient option for crops
with large populations. Speed breeding has come up
as a highly efficient and potent method for rapidly
developing new plant varieties. Notable successes
have been achieved in crops like cereals, oilseed and
vegetables where new cultivars have been developed
with desirable attributes such as more protein content,
disease resistance, salt tolerance and drought tolerance. Overall, speed breeding offers an accessible and
N. Chaudhary · R. Sandhu (*)
Department of Genetics and Plant Breeding, School
of Agriculture, Lovely Professional University JalandharDelhi G.T. Road, Phagwara, Punjab 144411, India
e-mail: dr.rubby23@gmail.com
transformative option for crop improvement, which
will definitely help in global agricultural demand and
mitigate the result of climate alteration on agriculture. This review provides a glance of SB’s activities
across various crops and its significance in the current
context of crop improvement.
Keywords Speed breeding · Single seed descent ·
Genome editing · Rapid generation advancement ·
Growth chambers
Introduction
Speed breeding has received a lot of attention around
the world of plant breeding because of its potential to
accelerate plant growth and development that boosts
agricultural yields and enhance food security. Speed
breeding involves growing plants under controlled
environments that optimize light, temperature, and
other growth factors to accelerate the breeding process. By doing so, the technique presents possibilities for quickly producing stable and homozygous
genotypes, enabling the swift progression of generations, and hastening the advancement and launch of
novel varieties (Watson et al. 2018). Speed breeding
is emerging as the best technique to accelerate the
breeding cycles of neglected crop (Chiurugwi et al.
2019). Numerous phenotyping protocols have been
customized for the speed breeding system, facilitating the identification and choice of significant traits.
Vol.: (0123456789)
13
42
Page 2 of 12
Illustrative instances encompass seminal root attributes linked to drought adaptation (Richard et al.
2015), grain dormancy contributing to pre-harvest
sprouting resilience (Hickey et al. 2010), and diseaserelated attributes like adult plant resistance (APR)
to leaf rust (Riaz et al. 2016), stripe rust (Hickey
et al. 2011), and yellow spot (Dinglasan et al. 2016)
in bread wheat. This process also integrates early
seed harvesting (Watson et al. 2018). The strategy
employs early-generation selection in populations
stemming from phenotypically diverse parentage, a
practice proven advantageous for enhancing populations with desirable alleles (Hickey et al. 2012; Richard et al. 2018). Speed breeding methods are a convenient strategy for hastening conventional breeding
Euphytica
programs, but their implementation requires specialized knowledge, well-equipped plant phenotyping centers, suitable facilities, and ongoing funds
backing for research and development projects to be
effective (Wanga et al. 2021). Despite, the application of speed breeding techniques can be costly and
requires specialized knowledge and facilities, there
is potential for significant acceleration in traditional
breeding programs and produce stable and homozygous genotypes in a shorter timeframe. Likewise,
a study by Hickey et al. (2017) observed the speed
breeding approach with conventional breeding along
with shuttle breeding in wheat. In Fig. 1, the comparative timeline of wheat variety development is
visually depicted, highlighting the results of Hickey
Fig. 1 Timeline comparison of speed breeding with other breeding techniques
Vol:. (1234567890)
13
(2024) 220:42
Euphytica
Page 3 of 12
(2024) 220:42
42
et al.’s (2017) study. The figure demonstrates the significant reduction in breeding time achieved through
the speed breeding approach (1–2 years) compared to
conventional breeding (3–7 years) and shuttle breeding (3 years). Furthermore, Saxena et al. (2017) study
on pigeon pea showed that the immature seeds could
be harvested and germinated successfully by reducing
germination time by 3 weeks allowing 4 seed to seed
generation completed in a year.
History and evolution of speed breeding
Speed breeding was first practiced in the 1980s by
John W. Finley and Todd T. Herzog of the USDA’s
Agricultural Research Service in Mississippi. They
used artificial lighting to multiply the number of
wheat crops each year. In the 1980s, NASA and Utah
State University collaborated on a research program
to advance the generation of wheat on a space station, which paved the way for opportunities of crop
breeding in space to fulfil the dietary needs of astronauts, the USU-Apogee was the initial dwarf wheat
cultivar created using the technique of ‘speed breeding’ (Ghosh et al. 2018; Hickey et al. 2019). In the
1990s, the discovery of LED lights and their impact
on plant growth and development were assessed at
the University of Wisconsin, USA. This discovery
helped to accelerate research and application of speed
breeding for crop improvement. Induced by NASA’s
efforts, researchers at the University of Queensland
coined the phrase "speed breeding" in 2003 to accelerate wheat breeding generation improvement. To
shorten generation times, speed breeding is combined
with many technologies, such as DH technology and
embryo rescue (Ahmar et al. 2020). Illustration of
history and evolution of speed breeding is given in
Fig. 2.
Speed breeding coupled with advanced breeding
methods
The combination of speed breeding with other modern breeding techniques, like single seed descent,
double haploid and MAS has the potential to accelerate crop improvement research by shortening generation times, testing cultivar hybridity and purity,
and allowing rapid gene introgression into recurrent parent backgrounds. Several studies have shown
the success of speed breeding coupled with genome
Fig. 2 History and evolution of speed breeding
editing in crop plants. For instance, researchers
used CRISPR/Cas9 technique to edit genes in wheat
plants, resulting in increased yield and drought resistance. In tomato plants, the combination of CRISPR/
Cas9 technique and speed breeding resulted in plants
with reduced ethylene biosynthesis that improved the
shelf life of the fruit (Liu et al., 2021). In rice plants,
the application of TALEN gene editing technique
resulted in plants with increased resistance to bacterial blight disease (Shan et al. 2013). An illustration depicting Speed breeding coupled with modern
breeding techniques is given in Fig. 3.
Speed breeding protocols
By multiplying the plant generation that can be
cycled within a year, speed breeding protocols can
reduce the breeding time period and lead to greater
genetic gain in crop improvement programs. This is
especially beneficial for line development and crossing prior to field evaluation (Hickey et al. 2019). It
is necessary for different crops to respond differently against varying growing environments, which
underscores the need for the development of cropspecific speed breeding protocols that are standardized. (Velez-Ramirez et al. 2014). The plant breeding
Vol.: (0123456789)
13
42
Page 4 of 12
Euphytica
(2024) 220:42
Fig. 3 Speed breeding coupled with modern breeding
techniques
process can be slow due to the difficulty and timeconsuming nature of crossing elite parental lines. Precisely managing the growth environment, particularly
the lighting and temperature-controlled conditions,
is the primary hurdle when utilizing speed breeding, with more 50% of the cost of speed breeding
protocols going toward this aspect (O’Connor et al.
2013). Subsequently, several generations of selfing
are required, which can take up to six years. Selfing
is a plant breeding process that involves crossing a
plant with either itself or a genetically identical plant,
resulting in offspring that have uniform genetics.
(Lenaerts et al. 2019). Various breeding techniques,
including shuttle breeding, embryo rescue, and doubled haploid, have been developed for generation
advancement in different crops. While doubled haploid technology is commonly used in maize to create
purelines, (De La Fuente et al. 2020) it can be laborintensive and requires specialized skills, especially
when dealing with large populations. Speed breeding,
on the other hand, enables to produce 4–6 generations
each year while being less labor-intensive, making it
more accessible for crops with large populations. In
addition, the process of speed breeding can include
the evaluation of physical traits in its methodology.
This technique is versatile and can be used for various
Vol:. (1234567890)
13
types of plant genetic material, without the need for
specialized laboratory conditions for tissue culture.
It is a highly effective approach for small-grain cereals, as it enables the growth of a significant number
of genetically pure lines in a compact space, resulting
in cost and space savings (Watson et al. 2018). In this
part of the article, different techniques to apply speed
breeding methods have been discussed crop wise.
Methods for quick generation progression in various
crops is given in Table 1.
Fast breeding of major crops
Speed breeding was evaluated as a method to speed
up research on cereal crops such as spring wheat,
barley, durum wheat. Watson et al. (2018) used three
methods to accelerate the plant breeding to overcome
the time taken to release the new variety.
Figure 4 depicts methods of speed breeding techniques on wheat in controlled environments (I), a
glasshouse (II), and a homemade low-cost growth
room (III) as demonstrated by Watson et al. in 2018.
To support circadian clock genes, Speed Breeding I
used a light/dark cycle instead of a continuous photoperiod. A Conviron BDW chamber was utilised
to grow plants in regulated settings. The lighting
Euphytica
Page 5 of 12
(2024) 220:42
42
Table 1 Methods for quick generation progression in various crops with information on the no. of generations attained per year,
days required for flowering, and the selection procedures employed
Crop
Technique/ protocol used
Selection Reference
Days of flowering No. of
generation/ method
year
Wheat
Rice
Canola
Soybean
Pigeon pea
Alternating light and dark condition, soil moisture
Photothermal condition and high-density plantation
Controlled environment
CO2 supplementation-controlled environment
Photoperiod, controlled environment, immature
seed germination
Growth hormones
Light intensity and immature seed germination
28–41
75–85
73
23
50–56
7.6
4
4
5
4
SSD
SSD
SSD
SSD
SPD
(Zheng et al. 2013)
(Collard et al. 2017)
(Watson et al. 2018)
(Jahne et al. 2020)
(Saxena et al. 2017)
33
33
5
7
SPD
(Cazzola et al. 2020)
(Samineni et al. 2020)
Lentil
Chickpea
SPD, Single Pod Descent; SSD, Single Seed Descent; “–” not available
Fig. 4 Demonstration of speed breeding in controlled environment (I), glasshouse (II) and homemade low-cost growth room (III)
applied on wheat by Watson et al. 2018
emulated sunrise and dusk. Speed breeding II, Photo
thermal glasshouse was installed with sodium vapour
to maintain 17/22 °C. The 22-h photoperiod and 12-h
temperature cycle alternate. The temperature was
Vol.: (0123456789)
13
42
Page 6 of 12
17 °C and the lighting were out for two hours at night.
At 45 cm above the bench, mature plants received
440-650 μmol m-2–1. Temperature and light fluctuations were abrupt. Speed breeding and day-neutral
settings increased wheat spikes but not grains. Speed
breeding III, a low-cost growing chamber concept
using just LED lights to reduce lighting and cooling
costs. Based on genotype and cross-breeding strategy,
this approach provides 4–5 generations each year in a
limited area (Fig. 1).
In a study conducted by Collard et al. in 2017, an
innovative greenhouse system was introduced for cultivating rice. This system utilized specialized seedling
trays to foster plant growth. To ensure a robust germination rate of 95–100%, four to five seeds were strategically sown in each individual cell. Subsequently,
a meticulous thinning process was undertaken at
approximately 10–14 days after planting (DAP),
where only one plant per cell was retained. The application of fertilizers was practiced with a minimalistic
approach. Moreover, the harvesting phase typically
commenced around 90 DAP, taking into account the
specific population dynamics. The entire harvesting
process was usually finalized within a span of 95–105
DAP. Upon achieving the desired target generation,
such as F5 or F6, the panicles underwent a critical
step of being transplanted into the field, organized
in rows referred to as ’panicle rows.’ This step was
crucial for amplifying seed production, often yielding
F5:6 seeds. This innovative approach showcased in
Collard et al.’s research signifies a pivotal advancement in rice cultivation, underlining meticulous
techniques from germination to field establishment,
thereby contributing to improved yields and sustainable farming practices.
A protocol for speed breeding in peanut using controlled temperature and continuous light was developed, which allowed for the inbreeding of ­F2, ­F3, and
­F4 generations within a year, after parental crosses
and field growth of ­F1 plants. Similarly, in soybean,
Euphytica
(2024) 220:42
Jahne et al. (2020) achieved 5 generations in a year
by implementing LED technology, early harvesting,
and a 10-h photoperiod. To create a rapid generation
protocol for canola, a comparative study of various
factors that can impact canola growth and pod filling, including soil, light, temperature, and irrigation
was conducted and examination of the state that affect
the germination of immature embryos in six different canola varieties was done (Yao et al. 2016). The
approach involved manipulating light, temperature,
watering, and potting mix to induce flower differentiation and culturing young embryos in vitro. It has
been found that temperatures exceeding 33℃ can
result in reduced anthesis time and elevated male sterility in crop such as soybean (Hatfield and Prueger
2015; Singh et al. 2015). Temperature control plays
an important role in promoting flower growth, seed
production, and maturation, all of which are essential for expediting breeding processes. In the instance
of wheat and barley, embryo cultures were used to
obtain immature seeds that were subsequently germinated at a temperature range of 20–22℃ (Zheng et al.
2013). Using a 10-h photoperiod enriched with blue
light and deprived of far-red light, soybean plants
matured in 77 days of sowing, for five generations to
be grown in a year (Harrison et al. 2021). Similarly,
supplying additional ­CO2 in chamber and LED system elevates 5 generations says (Nagatoshi and Fujita
2019) and (Jahne et al. 2020) respectively. Table 2
provides a comprehensive overview of the key findings and insights from these studies.
The protocols of speed breeding are established
for some vegetable crops include tomato (Solanum
Lycopersicon), pea (Pisum sativum), soybean (Glycine
max) while there is still a need for further research
to standardize and develop speed breeding protocols for legumes, leafy vegetables, and herbs. Many
efforts are established and standardized speed breeding methods for a range of vegetable crops, including radish, pea, and tomato, aimed at improving yield
Table 2 List of emerging Soybean speed breeding technique developed
Sr. no
Technique/protocol used
No. of generation/ year
Reference
1
2
3
4
Fresh seed method and MAS
Red and blue light, coupled with thermal condition
CO2 supplementation and lamps
LED system, immature seed germination
Least 4 or more
5 or more
5 or more
5 or more
(Fang et al. 2021)
(Harrison et al. 2021)
(Nagatoshi and Fujita 2019)
(Jähne et al. 2020)
Vol:. (1234567890)
13
Euphytica
Page 7 of 12
(2024) 220:42
under continuous light exposure. To enhance continuous light tolerance, the CAB-13 gene has been incorporated through introgression (Velez-Ramirez et al.
2014). Speed breeding is helpful to decrease generation time taken for other crops like tomato and potato
(8 generation per year in two fields) Pepper (continuous light for early flowering and fruit) (Chiurugwi
et al. 2019). Onion is biennial, cross-pollinated and
exhibits inbreeding depression (Khosa and Dhatt
2020); that takes 10—12 years for varietal development (Brewster 2008; Khosa and Dhatt 2020). Speed
breeding in onions can be expedited by inducing
onion bulbs to break their dormancy. This process can
accelerate the development of bulbs within 45 days
and enable rapid bulb maturation within 46–80 days,
which is significantly shorter than the 5–6 months
typically required for bulb development (Brewster
2008; Khosa and Dhatt 2020). The standardized speed
breeding protocol for potatoes involves supplementing
plants with a continuous long photoperiod in a controlled greenhouse environment. This results in accelerated plant growth, earlier flowering and fruiting, and
faster seed maturity (Sood et al. 2020). The sensitivity of tomato towards continuous light supplementation is well-documented. However, recent studies have
identified a locus known as CAB-13 associated on
the short arm of chromosome 7, which is responsible
for continuous light tolerance. The CAB-13 gene has
been linked with the marker 7–20-1B and its role in
conferring light resistance has been extensively tested
(Velez-Ramirez et al. 2014). Using gene expression
analysis and gene ontology, researchers were able to
discover differentially expressed proteins by investigating metabolic pathways and biochemical events
that lead to continuous light tolerance in tomato. This
knowledge was then used to cultivate tomato plants
in a speed breeding chamber supplemented with 24 h
light.
Legume species, particularly temperate pulses,
have been the subject of several generation acceleration protocols, with a focus on optimizing their
growth and development. The concept of a speed
breeding program aimed at quickly cycling through
generations and efficiently accumulating desired
traits has garnered significant interest in various coolseason legumes such as chickpeas (Cicer arietinum),
Faba beans, lentils, and peas (Pisum sativum). Additionally, certain warm legumes including common
beans, cowpeas, and pigeon peas have also captured
42
attention in relation to this approach (Saxena et al.
2019) soybean, and groundnut (Mobini et al. 2015).
These pulses exhibit a positive response to long photoperiod due to their facultative long day plant nature
(Croser et al. 2021). Research has shown that providing optimal conditions of continuous light, controlled
environment within a greenhouse can significantly
enhance the growth rate of peanut plants (Jahne et al.
2020). For reducing generation cycles in pea and
bambara groundnut, a combination of in vitro protocols and in vivo manipulation has been found to be
more effective. However, an in vivo-only approach
has shown promising results for peas and grass peas
(Varshney et al. 2021). These techniques have allowed
for the production of up to F8 of lentil within a year
(Mobini et al. 2015). A technique for accelerated generation advancement in pigeon pea involves harvesting underdeveloped seeds from 35 day old plants,
resulting in 100% germination and enabling three to
four generations to be grown within a year (Saxena
et al. 2017). Early flowering was seen in chickpea
plants exposed to 12/ 12 h of light/dark cycle using
a 60W incandescent bulb emitting 870 lm of light
intensity (Samineni et al. 2020). The chipped seeds
demonstrated a high germination rate, ranging from
95 to 99% (Parmar et al. 2021). Starting from 2016,
the technology of SB has been integrated into public
breeding programs for cool-season legumes in Australia. The derived RILs have been employed to identify the associations between genes and traits (Dadu
et al. 2021; Khoo et al. 2021; Taylor et al. 2021;
Zaman et al. 2019), Integration of SB with other technologies has been adopted to hasten the development
of cultivars (Croser et al. 2021).
The increasing instances of speed breeding being
applied to both long-day and, more recently, shortday plants serve as evidence of its wide applicability in breeding initiatives. This approach enables
accelerated development of homozygosity, the
establishment of mapping populations, and substantial reduction in the time, space, and resources
required for cultivar enhancement.
Opportunities of speed breeding
Speed breeding presents possibilities for quickly producing stable and homozygous genotypes, enabling
the swift progression of generations and hastening the
Vol.: (0123456789)
13
42
Page 8 of 12
advancement and launch of novel varieties. (Watson
et al. 2018).
Manipulation of photoperiod regime
Speed breeding techniques that rely on light offer the
advantage of maintaining continuous photosynthesis throughout the entire day and year (Bhatta et al.
2021). According to (Samineni et al. 2020) research,
exposing chickpea plants to 12/ 12 h of light/dark
cycle using a 60 W incandescent bulb emitting
870 lm of light intensity resulted in early flowering.
Similar photoperiod regimes utilizing light sources
that emit Photosynthetically Active Radiation (PAR)
ranging from 400–700 nm and a light intensity of
360–650 μmol/m2/s was effectively employed in
numerous crops, such as wheat, rice, pea, canola, and
chickpea, to expedite speed breeding processes (Watson et al. 2018).
Management of temperature condition
To facilitate the germination of immature chickpea
seeds that were directly sown, a consistent temperature of 25 ± 1 ℃ was maintained alongside a light/
dark cycle of 12 h each (Samineni et al. 2020). It has
been found that temperatures exceeding 33℃ can
result in reduced pollen viability and elevated male
sterility in crops such as rice, sorghum, and soybean
(Hatfield and Prueger 2015; Singh et al. 2015). Temperature control plays an important role in promoting
flower growth, seed production, and maturation, all
of which are essential for expediting breeding processes. In the instance of wheat and barley, embryo
cultures were used to obtain immature seeds that were
subsequently germinated at a temperature range of
20–22 ℃ (Zheng et al. 2013).
Expediting breeding through the quick formation of
homozygous lines
Speed breeding is a collection of methods that involve
modifying the growing conditions of crop genotypes
to hasten the process of flowering and seed production, thereby allowing for rapid progression to the
next generation in breeding. This approach helps to
save resources and time in breeding by facilitating
faster generation advancement.
Vol:. (1234567890)
13
Euphytica
(2024) 220:42
Achievements
The use of speed breeding programs has revolutionized the agricultural industry by enabling the rapid
growth of several crops, including cereals, pulses
and oilseed crops. This technique has allowed up
to six generations per year in wheat, barley, chickpea, and up to four generations in canola (Acquaah
2009). Researchers from University of Queensland, Australia successfully performed speed breeding technique in wheat, followed by a development
of new variety from John Inns Center, UK in 2017,
with continuous use of speed breeding to develop
different variety, as illustrated in Fig. 5. By utilizing
speed breeding, the development of new cultivars has
become more efficient and effective. One notable success of speed breeding is the creation of the "DS Faraday" variety of wheat, which is a high protein, fine
wheat with potential to pre-harvest sprouting (Kapiel
2018). Additionally, the "Scarlett" barley cultivar in
Argentina, which was previously susceptible to many
diseases, has been modified using a modified backcrossing method with four lines to develop resistant
lines in just two years (Hickey et al. 2017). Speed
breeding has also been used to achieve drought tolerance in barley (Ghosh et al. 2018). In rice, the use
of speed breeding has led to the development of the
"YNU31-2–4" salt-tolerant variety. This was achieved
through the insertion of a gene using SNP marker and
the acceleration of the breeding cycle through speed
breeding (14 h light/10 h dark- germination to 30 days
of germination, ten h light/14 h dark reproductive
phase). The recently introduced varieties produced
through the application of speed breeding techniques
is displayed in Table 3. The efficiency of speed breeding has revolutionized crop improvement and has the
potential to transform the agricultural industry.
Current major challenges of speed breeding
Speed breeding methods are a useful strategy for
hastening conventional breeding programs, but their
implementation requires specialized knowledge,
well-equipped plant phenotyping centers, suitable
facilities, and ongoing funds backing for research and
development projects to be effective (Wanga et al.
2021). Precisely managing the growth environment,
particularly the lighting and temperature-controlled
conditions, is the primary hurdle when utilizing speed
Euphytica
Page 9 of 12
(2024) 220:42
42
Fig. 5 Achievements of
speed breeding (This image
was created using Bio
Render)
Table 3 List of newly
released varieties using
speed breeding techniques
Crops
Varieties
Year of release
Developed by
Wheat
Yumai 34
Long reach lancer
Mace
DS Faraday
Julins
Nw4568
Excalibur
Scarlett
Tallon
WI 4240
In VIgor L140P
45H29
NAM-NU14
Nitouche
Purple podded pea
2014
2016
2016
2018
2018
2018
2015
2019
2020
2018
2019
2016
2017
2020
2020
Chinese Academy of Agricultural Sciences
University of Queensland, Australia
University of Queensland, Australia
University of Queensland, Australia
John Innes Centre, UK
University of Queensland, Australia
University of Adelaide, Australia
University of Queensland, Australia
University of Queensland, Australia
John Innes Centre, UK
Bayer Crop Science
Pioneer
University of Nebraska-Lincoln
University of Queensland, Australia
John Innes Centre, UK
Barley
Canola
Maize
Pea
breeding, with more 50% of the cost of speed breeding protocols going toward this aspect (O’Connor
et al. 2013). While advance breeding techniques
like Marker-Assisted Selection, Pedigree-Assisted
breeding have been integrated, the size and expense
of the infrastructure required for speed breeding can
still constrain the number of multiplication and sizes
that can be assessed due to its significant cost which
utilizes established marker-trait associations, can
help to optimize resource utilization in conjunction
with speed breeding (Chen et al. 2018), a detailed
comparison of existing breeding techniques is provided in Table 4. By merging speed breeding and
quality field trials, scientists can concentrate their
efforts on the essential elements of the breeding program that require acceleration. These may include the
crossing of parental lines in crops that are clonally
propagated or have extended juvenile periods, as well
as the development of high-quality inbreds exploited
by hybridization (Chen et al. 2018). For breeding programs that lack sufficient resources, including land,
equipment, and qualified staff, speed breeding offers
Vol.: (0123456789)
13
42
Page 10 of 12
Euphytica
(2024) 220:42
Table 4 Comparison of speed breeding with other breeding techniques
Technique
Advantages
Disadvantages
Reference
Traditional breeding
Proven success
Marker assisted selection Faster than traditional breeding
Slow and labour intensive
Limited by marker density and
accuracy
Faster than marker-assisted selection Requires high-density genotyping
Fast and efficient
Requires specialized equipment
(Varshney and Dubey 2012)
(Bernardo 2016)
Genomic selection
Speed breeding
(Spindel et al. 2016)
(Watson et al. 2018)
a viable solution for quickly improving their initial
breeding resources (O’Connor et al. 2013). Applying
breeding convention to systems that enable rapid marketing of new varieties can help to recover the extra
costs associated with breeding (Collard et al. 2017).
Conclusion
Speed breeding offers exciting possibilities for rapidly producing stable and homozygous genotypes,
expediting the breeding process, and launching new
cultivars in a shorter timeframe. By handling the
photoperiod regime and managing temperature conditions, researchers can accelerate the speed breeding techniques for numerous crops, such as wheat,
barley, pea, canola, and chickpea. Furthermore, the
integration of advance breeding methods, for example genomics-assisted breeding, and linking breeding ways to systems for swift commercialization
can help recoup the additional breeding expenses.
Overall, speed breeding has efficiency to revolutionize conventional breeding programs, saving
resources and time and enabling more rapid progress
in plant breeding. In conclusion, while the application of speed breeding techniques can be costly and
requires specialized knowledge and facilities, there
is potential for significant acceleration in traditional
breeding programs and produce stable and homozygous genotypes in a shorter time-frame. The use of
speed breeding techniques in evaluating pod shattering resistance in canola cultivars has shown promising outcome in accelerating the development of pod
shatter-resistant cultivars. This phenotyping protocol
could be a useful tool for breeders to enhance the efficiency of their breeding programs. Integrating modern breeding techniques and enhanced field trials can
optimize resource utilization, and linking plant breeding programs to systems for swift commercialization
Vol:. (1234567890)
13
can help recoup additional breeding expenses. Speed
breeding has the ability to revolutionize conventional
breeding methods, saving resources and time and enabling more rapid progress in plant breeding.
Author contributions RS conceived the idea and did the literature search. NC prepared the manuscript. RS read and critically revised the manuscript.
Funding
Self-funded.
Declarations
Conflict of interests
ests.
The authors declare no competing inter-
Ethics approval As this is a review article, no ethics approval
is required.
Consent to participate The corresponding author states that
all authors have given consent to participate.
Consent to publish The corresponding author states that all
authors have given consent to publish this article in the Euphytica Journal.
References
Acquaah G (2009) Principles of plant genetics and breeding.
John Wiley and Sons. https://​doi.​org/​10.​1002/​97811​18313​
718
Ahmar S, Gill RA, Jung KH, Faheem A, Qasim MU, Mubeen
M, Zhou W (2020) Conventional and molecular techniques from simple breeding to speed breeding in crop
plants: recent advances and future outlook. Int J Mol Sci
21(7):2590. https://​doi.​org/​10.​3390/​ijms2​10725​90
Bernardo R (2016) Bandwagons I, too, have known. Theo
Appl Genet 129:2323–2332. https://​doi.​org/​10.​1007/​
S00122-​016-​2772-5
Bhatta M, Sandro P, Smith MR, et al (2021) Need for speed:
manipulating plant growth to accelerate breeding cycles.
Curr Opin Plant Biol 60:101986. https://​doi.​org/​10.​
1016/J.​PBI.​2020.​101986
Euphytica
(2024) 220:42
Brewster JL (2008) Onions and other vegetable alliums. Vol.
15 CABI. doi/book/https://​doi.​org/​10.​1079/​97818​45933​
999.​0000
Cazzola F, Bermejo CJ, Guindon MF, Cointry E (2020) Speed
breeding in pea (Pisum sativum L.), an efficient and simple system to accelerate breeding programs. Euphytica.
https://​doi.​org/​10.​1007/​s10681-​020-​02715-6
Chen X, Hu G, Liu L (2018) Hacking an algal transcription
factor for lipid biosynthesis. Trends Plant Sci 23:181–184.
https://​doi.​org/​10.​1016/j.​tplan​ts.​2017.​12.​008
Chiurugwi T, Kemp S, Powell W, Hickey LT (2019) Speed
breeding orphan crops. Theor Appl Genet 132:607–616.
https://​doi.​org/​10.​1007/​s00122-​018-​3202-7
Collard BCY, Beredo JC, Lenaerts B et al (2017) Revisiting
rice breeding methods–evaluating the use of rapid generation advance (RGA) for routine rice breeding. Plant Prod
Sci 20:337–352. https://​doi.​org/​10.​1080/​13439​43X.​2017.​
13917​05
Croser J, Mao D, Dron N et al (2021) Evidence for the application of emerging technologies to accelerate crop improvement–a collaborative pipeline to introgress herbicide tolerance into chickpea. Front Plant Sci 12:2839. https://​doi.​
org/​10.​3389/​FPLS.​2021.​779122/​BIBTEX
Dadu RHR, Bar I, Ford R et al (2021) Lens orientalis contributes quantitative trait loci and candidate genes associated
with ascochyta blight resistance in lentil. Front Plant Sci
12:1784.
https://​doi.​org/​10.​3389/​FPLS.​2021.​703283/​
BIBTEX
De La Fuente GN, Frei UK, Trampe B et al (2020) A diallel
analysis of a maize donor population response to in vivo
maternal haploid induction: II. Haploid Male Fertil Crop
Sci 60:873–882. https://​doi.​org/​10.​1002/​CSC2.​20021
Dinglasan E, Godwin ID, Mortlock MY, Hickey LT (2016)
Resistance to yellow spot in wheat grown under accelerated growth conditions. Euphytica. https://​doi.​org/​10.​
1007/​s10681-​016-​1660-z
Fang Y, Wang L, Sapey E, Fu S, Wu T, Zeng H, Sun X, Qian
S, Khan MAA, Yuan S, Wu C, Hou W, Sun S, Han T
(2021) Speed-breeding system in soybean: integrating offsite generation advancement, fresh seeding, and markerassisted selection. Front Plant Sci. https://​doi.​org/​10.​3389/​
FPLS.​2021.​717077
Ghosh S, Watson A, Gonzalez-Navarro OE et al (2018)
Speed breeding in growth chambers and glasshouses
for crop breeding and model plant research. Nat Protoc
13(12):2944–2963.
https://​doi.​org/​10.​1038/​
s41596-​018-​0072-z
Harrison D, Da Silva M, Wu C, et al (2021) Effect of light
wavelength on soybean growth and development in a context of speed breeding. Crop Sci 61:917–928. https://​doi.​
org/​10.​1002/​CSC2.​20327
Hatfield JL, Prueger JH (2015) Temperature extremes: Effect
on plant growth and development. Weather ClimExtrem
10:4–10. https://​doi.​org/​10.​1016/J.​WACE.​2015.​08.​001
Hickey LT, Dieters MJ, DeLacy IH, Christopher MJ, Kravchuk OY, Banks PM (2010) Screening for grain dormancy
in segregating generations of dormant × non-dormant
crosses in white-grained wheat (Triticum aestivum L).
Euphytica. https://​doi.​org/​10.​1007/​s10681-​009-​0028-z
Hickey LT, Lawson W, Platz GJ, Dieters M, Arief VN, German
S et al (2011) Mapping Rph20: a gene conferring adult
Page 11 of 12
42
plant resistance to Puccinia hordei in barley. Theor Appl
Genet. https://​doi.​org/​10.​1007/​s00122-​011-​1566-z
Hickey LT, Lawson W, Arief VN, Fox G, Franckowiak J,
Dieters MJ (2012) Grain dormancy QTL identified in
a doubled haploid barley population derived from two
non-dormant parents. Euphytica. https://​doi.​org/​10.​1007/​
s10681-​011-​0577-9
Hickey LT, Germán SE, Pereyra SA et al (2017) Speed breeding for multiple disease resistance in barley. Euphytica.
https://​doi.​org/​10.​1007/​s10681-​016-​1803-2
Hickey LT, Hafeez AN, Robinson H, Jackson SA, LealBertioli SCM, Tester M, Gao C, Godwin ID, Hayes BJ,
Wulff BBH (2019) Breeding crops to feed 10 billion.
Nature Biotech 37(7):744–754. https://​doi.​org/​10.​1038/​
s41587-​019-​0152-9
Jahne F, Hahn V, Würschum T, Leiser WL (2020) Speed breeding short-day crops by LED-controlled light schemes.
Theo Appl Genet 133:2335–2342. https://​doi.​org/​10.​1007/​
S00122-​020-​03601-4/​FIGUR​ES/3
Kapiel TYS (2018) Speed breeding: a powerful innovative tool
in agriculture. Innov Tech Agric 2:413–415
Khoo KHP, Sheedy JG, Taylor JD et al (2021) A QTL on the
Ca7 chromosome of chickpea affects resistance to the
root-lesion nematode pratylenchus thornei. Mol Breed
41:1–13. https://​doi.​org/​10.​1007/​S11032-​021-​01271-8
Khosa JS, Dhatt AS (2020) Improvement of onion through
accelerated approaches. Accel Plant Breed 2:57–75.
https://​doi.​org/​10.​1007/​978-3-​030-​47298-6
Lenaerts B, Collard BCY, de Mey Y, Demont M (2019) Global
survey data on rice breeders’ characteristics and willingness to adopt alternative breeding methods. Data Brief
23:103782. https://​doi.​org/​10.​1016/J.​DIB.​2019.​103782
Liu Y, Shi Y, Su D, et al (2021) SlGRAS4 accelerates fruit
ripening by regulating ethylene biosynthesis genes and
SlMADS1 in tomato. Hortic Res 8. https://​doi.​org/​10.​
1038/ ​ S 41438- ​ 0 20- ​ 0 0431-9/ ​ 4 2041 ​ 7 46/ ​ 4 1438_ ​ 2 020_​
ARTIC​LE_​431.​PDF
Mobini SH, Lulsdorf M, Warkentin TD, Vandenberg A (2015)
Plant growth regulators improve in vitro flowering and
rapid generation advancement in lentil and faba bean.
In Vitro Cell Dev Biol Plant 51:71–79. https://​doi.​org/​10.​
1007/​s11627-​014-​9647-8
Nagatoshi Y, Fujita Y (2019) Accelerating soybean breeding in
a CO2-supplemented growth chamber. Plant Cell Physiol
60:77–84. https://​doi.​org/​10.​1093/​PCP/​PCY189
O’Connor DJ, Wright GC, Dieters MJ, George DL, Hunter
MN, Tatnell JR, Fleischfresser DB (2013) Development
and application of speed breeding technologies in a commercial peanut breeding program. Peanut Sci 40:107–114.
https://​doi.​org/​10.​3146/​ps12-​12.1
Parmar S, Deshmukh DB, Kumar R, Manohar SS, Joshi P,
Sharma V, Chaudhari S, Variath MT, Gangurde SS, Bohar
R, Singam P, Varshney RK, Janila P, Pandey MK (2021)
Single seed-based high-throughput genotyping and rapid
generation advancement for accelerated groundnut genetics and breeding research. Agron 11:1226. https://​doi.​org/​
10.​3390/​AGRON​OMY11​061226
Riaz A, Periyannan S, Aitken E, Hickey L (2016) A rapid
phenotyping method for adult plant resistance to leaf
rust in wheat. Plant Methods. https://​doi.​org/​10.​1186/​
s13007-​016-​0117-7
Vol.: (0123456789)
13
42
Page 12 of 12
Richard CA, Hickey LT, Fletcher S, Jennings R, Chenu K,
Christopher JT (2015) High-throughput phenotyping of
seminal root traits in wheat. Plant Methods. https://​doi.​
org/​10.​1186/​s13007-​015-​0055-9
Richard CA, Christopher J, Chenu K, Borrell A, Christopher
M, Hickey L (2018) Selection in early generations to shift
allele frequency for seminal root angle in wheat. Plant
Genome 11:170071. https://​doi.​org/​10.​3835/​plant​genom​
e2017.​08.​0071
Samineni S, Sen M, Sajja SB, Gaur PM (2020) Rapid generation advance (RGA) in chickpea to produce up to seven
generations per year and enable speed breeding. Crop J
8:164–169. https://​doi.​org/​10.​1016/J.​CJ.​2019.​08.​003
Saxena K, Saxena RK, Varshney RK (2017) Use of immature
seed germination and single seed descent for rapid genetic
gains in pigeonpea. Plant Breed 136:954–957. https://​doi.​
org/​10.​1111/​pbr.​12538
Saxena KB, Saxena RK, Hickey LT, Varshney RK (2019)
Can a speed breeding approach accelerate genetic gain in
pigeonpea. Euphytica 215:1–7. https://​doi.​org/​10.​1007/​
s10681-​019-​2520-4
Shan Q, Wang Y, Chen K et al (2013) Rapid and efficient gene
modification in rice and Brachypodium using TALENs.
Mol Plant 6:1365–1368
Singh V, Nguyen CT, van Oosterom EJ, Chapman SC, Jordan
DR, Hammer GL (2015) Sorghum genotypes differ in
high temperature responses for seed set. Field Crops Res
171:32–40. https://​doi.​org/​10.​1016/J.​FCR.​2014.​11.​003
Sood S, Bhardwaj V, Sundaresha S (2020) Major paradigm
shifts in potato breeding. Accel Plant Breed 2:1–16.
https://​doi.​org/​10.​1007/​978-3-​030-​47298-6
Spindel JE, Begum H, Akdemir D, Collard B, Redoña E,
Jannink JL, McCouch S (2016) Genome-wide prediction models that incorporate de novo GWAS are a powerful new tool for tropical rice improvement. Heredity
116:395–408. https://​doi.​org/​10.​1038/​hdy.​2015.​113
Taylor CM, Garg G, Berger JD, Ribalta FM, Croser JS, Singh
KB, Cowling WA, Kamphuis LG, Nelson MN (2021) A
tri methyl guanosine synthase1-like (TGS1) homologue
is implicated in vernalisation and flowering time control.
Trends Plant Sci 134:3411–3426. https://​doi.​org/​10.​1007/​
S00122-​021-​03910-2
Varshney RK, Dubey A (2012) Novel genomic tools and modern genetic and breeding approaches for crop improvement. J Plant Biochem Biotechnol 18:127–138. https://​
doi.​org/​10.​1007/​BF032​63311
Vol:. (1234567890)
13
Euphytica
(2024) 220:42
Varshney RK, Bohra A, Yu J, Graner A, Zhang Q, Sorrells ME
(2021) Designing future crops: genomics-assisted breeding comes of age. Trends Plant Sci e 26:631–649. https://​
doi.​org/​10.​1016/J.​TPLAN​TS.​2021.​03.​010
Velez-Ramirez AI, Van Ieperen W, Vreugdenhil D, Van Poppel
PMJA, Heuvelink E, Millenaar FF (2014) A single locus
confers tolerance to continuous light and allows substantial yield increase in tomato. Nat Commun 5:1–13. https://​
doi.​org/​10.​1038/​ncomm​s5549
Wanga MA, Shimelis H, Mashilo J, Laing MD (2021) Opportunities and challenges of speed breeding: a review. Plant
Breed 140:185–194. https://​doi.​org/​10.​1111/​pbr.​12909
Watson A, Ghosh S, Williams MJ, Cuddy WS, Simmonds J,
Rey MD, Asyraf Md Hatta M, Hinchliffe A, Steed A,
Reynolds D, Adamski NM, Breakspear A, Korolev A,
Rayner T, Dixon LE, Riaz A, Martin W, Ryan M, Edwards
D, Hickey LT (2018) Speed breeding is a powerful tool to
accelerate crop research and breeding. Nat Plants 4:23–29.
https://​doi.​org/​10.​1038/​s41477-​017-​0083-8
Yao Y, Zhang P, Wang HB, Lu ZY, Liu CJ, Liu H, Yan GJ
(2016) How to advance up to seven generations of canola
(Brassica napus L.) per annum for the production of pure
line populations. Euphytica 209:113–119. https://​doi.​org/​
10.​1007/​s10681-​016-​1643-0
Zaman MSU, Malik AI, Kaur P, Ribalta FM, Erskine W (2019)
Waterlogging tolerance at germination in field pea: variability, genetic control, and indirect selection. Front Plant
Sci 10:953. https://​doi.​org/​10.​3389/​FPLS.​2019.​00953
Zheng Z, Wang HB, Chen GD, Yan GJ, Liu CJ (2013) A procedure allowing up to eight generations of wheat and nine
generations of barley per annum. Euphytica 191:311–316.
https://​doi.​org/​10.​1007/​s10681-​013-​0909-z
Publisher’s Note Springer Nature remains neutral with regard
to jurisdictional claims in published maps and institutional
affiliations.
Springer Nature or its licensor (e.g. a society or other partner)
holds exclusive rights to this article under a publishing
agreement with the author(s) or other rightsholder(s); author
self-archiving of the accepted manuscript version of this article
is solely governed by the terms of such publishing agreement
and applicable law.
Download