1 Answers to end-of-chapter questions 1 A [1] 2 C [1] 3 B [1] 4 B [1] 5 C [1] 6 B [1] 7 D [1] 8 A [1] Structured questions 9 a i α-carbon / central carbon R group / side group carboxyl group amino group Each correct label [1] [max 4] Biology for CAPE Original material © Cambridge University Press 2011 1 ii H2O condensation Peptide bond / linkage Showing where condensation would occur [1] Correct dipeptide [1] + H2Opeptide bond [1] Identifying b i Level Types of bond Position of bonds Effect of bond formation formed between the –NH3 + group of one amino acid and the –COO– group of another amino acid formed between –CO and –NH groups of the peptide linkage linear molecule, determines the sequence and number of amino acids Primary structure peptide / covalent Secondary structure hydrogen Tertiary structure ionic formed between R groups / side chains with –COO– and –NH3+ groups hydrogen formed between –OH groups, –OH and –COOH groups, –OH and –NH2 groups disulphide between the sulphur groups of two cysteine molecules hydrophobic formed between nonpolar groups formed between side chains of two or more polypeptides Quaternary structure Biology for CAPE ionic hydrogen hydrophobic disulphide results in folding of the protein to give either an α-helix or βpleated molecule results in the polypeptide folding to give a globular or 3D structure stabilises / holds the polypeptide monomers together 8–12 points [3] 4–7 points [2] 3 points [1] < 3 points [0] Original material © Cambridge University Press 2011 2 ii c [1] [1] Any three points (1 mark each): • • • • • • • • 10 a Similarity: both have hydrogen bonds between –CO and –NH groups of the peptide linkage groups Difference: α-helix: hydrogen bonding between –CO and –NH groups of amino acids four places apart in a single chain β-pleated sheet: hydrogen bonding between –CO and –NH groups of amino acids of adjacent chains transport molecules in cell membrane, i.e. carrier and channel proteins oxygen-transport molecules, e.g. haemoglobin structural proteins, e.g. collagen in skin, tendons, walls of blood vessels enzymes, e.g. pepsin, amylase defence, e.g. antibodies as signalling molecules, e.g. hormones contractile for movement, e.g. tubulin storage, e.g. egg albumen [max 3] i [3] ii b In the β form of glucose, the –OH on carbon 1 is on the same side of the ring as carbon 6 / it is above the plane [1] i Procedure and test reagents Biuret Iodine in Ethanol Boil with solution potassium Benedict’s dilute iodide and heat acid and neutralise [tick] [cross] [cross] [cross] [cross] reducing sugar [tick] [tick] [cross] [cross] [cross] nonreducing sugar [cross] [cross] [cross] [tick] [cross] starch [cross] [cross] [tick] [cross] [cross] protein [cross] [cross] [cross] [cross] [tick] lipid Food ii 4–5 correct [4] 3 correct [3] 2 correct [2] 1 correct [1] Specimen contains a reducing sugar and protein Biology for CAPE Original material © Cambridge University Press 2011 [1] 3 c Stage 1: calibration / colour standards prepared (a) Make 0.1%, 0.5%, 1.0%, 2.0% concentrations of glucose by serial dilution. (b) Label 5 test-tubes 0.1%, 0.5%, 1.0%, 2.0% and 4.0% glucose respectively. (c) Add 5 cm3 of Benedict’s solution to each test-tube. (d) Add 0.5 cm3 of each of the glucose solutions to the appropriate test-tube, using a clean syringe each time. (e) Shake each test tube in order to mix the contents. (f) Place all five test tubes in a boiling water bath for 2 minutes. (g) Carefully remove the test tubes and place in a test-tube rack. Stage 2: Benedict’s test on fruit juices (a) Repeat steps (b) to (g) using the fruit juices A, B and C. (b) Stir the colour standards and fruit juices. (c) Compare the colours of the fruit juices with the known glucose concentrations. (d) Estimate the % concentration of glucose of the fruit juices using the colour standards. Stage 3: Conversion of % glucose to mg glucose 4% glucose = 4000 mg of glucose in 100 cm3 of water Therefore 0.5 cm3 of 4% glucose contains 4000 / 100 × 0.5 mg of glucose = 20 mg glucose. Logical sequence of method [4] 0.5 cm3 of 2.0% glucose = 10 mg Same volumes, time used 0.5 cm3 of 1.0% glucose = 5 mg for both Stage 1 and 2 [2] 0.5 cm3 of 0.5% glucose = 2.5 mg Conversion of % to mg [1] 0.5 cm3 of 0.1% glucose = 0.5 mg [max 7] 11 a i Correct structure for glucose [1] Correct structure for fructose [1] Identification of where bond will be formed [1] Correct structure of sucrose [1] ii Condensation reaction iii Function: Sucrose is the main form in which carbohydrates are transported in plants. Relation to structure: It is soluble and less reactive than glucose. Function: It is an important source of energy. Relation to structure: It can be hydrolysed to give glucose and fructose. Fructose isomerises to give glucose. Hence two/one molecule of sucrose produces two Any function [1] molecules of glucose for respiration. Corresponding relation to function [1] Biology for CAPE [1] Original material © Cambridge University Press 2011 4 iv Sucrose is a non-reducing sugar because its reactive –OH groups on carbon 1 in glucose and carbon 2 in fructose are used to form the glycosidic bond. Therefore, these groups are not available to reduce the Cu2+ ions in Benedict’s solution [1] [1] b Form of glucose Bonds between monomers Features of molecule Function Starch α-glucose Cellulose β-glucose Glycogen α-glucose amylose: α 1–4; amylopectin: α 1–4 and α 1–6 compact, insoluble and easily hydrolysed to glucose β 1–4 α 1–4 and α 1–6 straight chain, with –OH projecting outwards; hydrogen bonding between molecules to form fibrils structural in plants, cell wall formation in plants Compact, insoluble molecule, easily hydrolysed to glucose energy storage molecule in plants energy storage in animals Any 2 points [1] [max 6] Essay questions 12 a Structure of water can be shown by a diagram as well as described in words. In a water molecule, the two hydrogen atoms are found to be on one side of the oxygen atom. The oxygen atom pulls the bonding electrons towards it, which makes the oxygen slightly negatively charged. The hydrogen atoms have small positive charges. This unequal distribution of charge is called a dipole. • States that hydrogen bonding is responsible for properties of water. [2] [1] [1] Any five features with effect (1 mark each point): • solvent properties: can dissolve ionic / polar substances by isolating and dissolving them water can act as a transport medium / allows for metabolic reactions Biology for CAPE Original material © Cambridge University Press 2011 5 • specific heat capacity: requires a large amount of heat to increase temperature this reduces fluctuations in temperature / more stable habitat / maintains temperature for enzyme activity / metabolic reactions • high heat of vaporisation: requires a large amount of energy to change from liquid to vapour helps to maintain body temperature by sweating / cooling mechanism / cooling in plants • high heat of fusion: requires a large amount of energy to change state from liquid to solid and solid to liquid makes it difficult for water to freeze / cells contain cytoplasm which is mostly water / ice crystals would not form inside cells • density and freezing properties: maximum density at 4 oC / ice less dense than liquid water / ice floats acts as an insulator / allows for organisms to survive in freezing conditions below ice / circulation of nutrients • high cohesion and surface tension: hydrogen bonding holds water molecules together allows for mass flow in plants / small animals can walk across water for food • pH: measure of concentration of hydrogen ions in a solution works with other substances to act as buffers • transparency: transparent to visible wavelengths of light allows for photosynthesis to take place by algae / plants in water • reactivity: water takes part in many metabolic reaction [1 mark each, max 5] b i Globular – formed by the folding of polypeptide by interaction of R groups (ionic, hydrophobic, disulphide and hydrogen bonding) into complex shapes / compact spherical protein [2] ii 4 subunits (2 α and 2 β) interlock haem group which carries oxygen globular protein Diagram with four subunits [1] Labels [1] • • • • 13 a i Hb molecule has 4 haem groups oxygen binds to haem group 4 oxygen molecules carried by each Hb molecule when first oxygen molecule binds to first haem group, there is a small change in the four polypeptides’ tertiary structure, making it easier for an oxygen molecule to bind to the other three Starch: made up of amylose and amylopectin Monomer: α-glucose In amylose: α 1–4 glycosidic bond, unbranched / helix / spiral In amylopectin: α 1–4 and α 1–6 glycosidic bond / branched Biology for CAPE Original material © Cambridge University Press 2011 [1] [1] [1] [1] [2] 6 Features: compact; takes up little space; does not interfere with metabolic reactions / inert; insoluble; does not affect water potential of cell [2] ii Starch • made up of α-glucose monomers • α 1–4 glycosidic bond • no rotation of monomer units • spiral / helix; amylopectin branches • no hydrogen bonding between molecules b Cellulose • made up of β-glucose monomers • β 1–4 glycosidic bond • alternate units rotated 180o • linear / straight chain / unbranched • hydrogen bonding between molecules to form microfibrils Any 4 comparative points [4] Any two points 1 mark: • alternate monomer units rotated 180o • many –OH groups sticking above and below the plane of molecule • many hydrogen bonds within molecule • many hydrogen bonds between molecules • linear / unbranched chains • 60–70 chains link by hydrogen bonding to form microfibrils • arranged in bundles to form fibrils c Any point 1 mark: • A single molecule made up of three single polypeptide chains twisted around each other / Each chain has a shape of a helix (due to hydrogen bonding and the secondary structure) / Molecule is described as a triple helix • Every third amino acid is the smallest amino acid, glycine / glycine allows the chain to coil tightly • There are covalent bonds formed between the triple helix. This occurs between the NH2 group of one chain and the COOH of another • Ends of the parallel molecule are staggered and hence there are no weak spots. It is strong because the fibrils overlap • Each complete three-stranded molecule cross-links with other collagen molecules running parallel to it to form fibrils [max 3] [max 4] 14 a ester linkage – bond formed by condensation of carboxyl and hydroxyl groups 2 saturated fatty acids (non-polar tails) unsaturated fatty acid – causes kinks in the molecule – nonpolar tail Biology for CAPE provides –OH groups, forms nonpolar head of molecule Drawing [2] Original material © Cambridge University Press 2011 7 4 labels [3] b • • • • • phospholipid – consists of a glycerol residue with two fatty acid tails and a phosphate group phosphate group is hydrophilic the fatty acid tails are hydrophobic 5 points [3] triglyceride – consists of a glycerol residue with 3 fatty acids tails 3–4 points [2] the molecule is nonpolar / hydrophobic 2 points [1] c Any point 1 mark: • • • • • • • • phospholipids: consist of hydrophilic head and 2 hydrophobic tails hydrophilic head attracted by water so orients towards the aqueous medium hydrophobic tails repelled by water and so oriented away from the aqueous medium forms a bilayer hydrophobic tails prevent movement of water-soluble / polar molecules allows the movement of lipid-soluble / nonpolar molecules weak interaction between phospholipid molecules makes membrane fluid the fluid nature of the membrane allows it to unfold, break and reconnect easily / exocytosis / endocytosis max [7] Biology for CAPE Original material © Cambridge University Press 2011 8