TAXONOMY OF CLASSIFICATION CLASSIFICATION • CLASSIFICATION IS THE PROCESS OF GROUPING THINGS BASED ON THEIR SHARED TRAITS. • BIOLOGISTS USE CLASSIFICATION TO ORGANIZE LIVING THINGS INTO GROUPS, SO THAT THE ORGANISMS ARE EASIER TO STUDY. • THE SCIENTIFIC STUDY OF HOW LIVING THINGS ARE CLASSIFIED IS CALLED TAXONOMY. WHO IS CAROLUS LINNAEUS? •A SWEDISH BOTANIST •DEVELOPED A 7-LEVEL (TAXA) CLASSIFICATION SYSTEM BASED ON SIMILARITIES BETWEEN ORGANISMS HOW DOES IT WORK? • THERE ARE 6 BROAD KINGDOMS • EVERY LIVING THING THAT WE KNOW OF FITS INTO ONE OF THE SIX KINGDOMS • EACH LEVEL GETS MORE SPECIFIC AS FEWER ORGANISMS FIT INTO ANY ONE GROUP BINOMIAL NOMENCLATURE • BI MEANS TWO • NOMEN MEANS NAME • A BINOMIAL NOMENCLATURE IS A CLASSIFICATION SYSTEM USING TWO NAMES TO IDENTIFY AN ORGANISM SCIENTIFIC NAME GENUS-SPECIES NAME GIVEN TO ALL ORGANISMS • CANIS FAMILIARIS IS THE SCIENTIFIC NAME FOR A DOMESTIC DOG. • CANIS IS THE GENUS NAME • FAMILIARIS IS THE SPECIES NAME • THIS SYSTEM USES A BINOMIAL NOMENCLATURE GENUS… • A GENUS CONSISTS OF A GROUP OF CLOSELY RELATED SPECIES • OTHER ANIMALS IN THE CANIS GROUP INCLUDE WOLVES AND COYOTES • THE GENUS NAME IS ALWAYS CAPITALIZED SPECIES... • A SPECIES CONSISTS OF ANIMALS THAT CAN MATE AND PRODUCE FERTILE OFFSPRING • ONLY DOMESTIC DOGS ARE KNOWN AS LUPUS. • THE SPECIES NAME IS ALWAYS LOWERCASE THE MOST BASIC CLASSIFICATION SYSTEM IS BASED ON DOMAINS AND KINGDOMS. ORGANISMS ARE CLASSIFIED INTO DOMAINS OR KINGDOMS BASED ON THESE CHARACTERISTICS: 1. WHETHER THEY ARE UNICELLULAR OR MULTICELLULAR 2. WHETHER THEY ARE PROKARYOTIC OR EUKARYOTIC 3. WHETHER THEY HAVE A CELL WALL OR CELL MEMBRANE 4. WHETHER THEY HAVE MEMBRANE BOUND ORGANELLES 5. WHETHER THEY ARE AUTOTROPHIC OR HETEROTROPHIC 6. WHETHER THEY REPRODUCE SEXUALLY OR ASEXUALLY 7. HOW THEY TOLERATE HEAT, SALT, OR OTHER EXTREME CONDITIONS BASIC CLASSIFICATION DOMAINS: • THERE ARE THREE DOMAINS OF LIVING ORGANISMS BASED ON THEIR CHARACTERISTICS: • ARCHAEA (ALSO CALLED ARCHAEBACTERIA) • EUBACTERIA (ALSO CALLED BACTERIA) • EUKARYOTA (ALSO CALLED EUKARYA) Archaea Eubacteria Eukaryota BASIC CLASSIFICATION KINGDOMS: THE DOMAINS CAN ALSO BE SPLIT INTO KINGDOMS WHICH FURTHER DIVIDE THE ORGANISMS BY THEIR CHARACTERISTICS. DOMAIN ARCHAEA “ARCHAEA” MEANS “ANCIENT” BACTERIA. ORGANISMS IN ARCHAEA ARE: Aerial view of hot spring at Yellowstone • UNICELLULAR • PROKARYOTIC • AUTOTROPHIC OR HETEROTROPHIC • ORGANISMS THAT REPRODUCE ASEXUALLY • BACTERIA THAT HAVE ADAPTED TO EXTREME ENVIRONMENTS. • SOME CAN SURVIVE IN EXTREMELY HOT ENVIRONMENTS, LIKE AROUND HOT SPRINGS AND GEYSERS. THEY ARE CALLED THERMOPHILES. • SOME CAN SURVIVE IN EXTREMELY SALTY ENVIRONMENTS, LIKE THE GREAT SALT LAKE IN UTAH. THEY ARE CALLED HALOPHILES. THE DOMAIN ARCHAEA HAS ONE KINGDOM, ALSO CALLED ARCHAEA This hot spring is flowing into the Firehole River in Yellowstone. The colors are caused by different varieties of archaebacteria and other microscopic life forms. Scientists can distinguish temperatures of water by the colors present. DOMAIN EUBACTERIA “EU” MEANS “TRUE” BACTERIA. THEY ARE: • UNICELLULAR • PROKARYOTIC • AUTOTROPHIC OR HETEROTROPHIC • ORGANISMS THAT REPRODUCE ASEXUALLY • THE MOST ABUNDANT ORGANISMS ON EARTH. ONE BACTERIUM CAN GIVE RISE TO 10 MILLION IN 24 HOURS. • FOUND IN ALMOST EVERY HABITAT ON EARTH. THE DOMAIN EUBACTERIA HAS ONE KINGDOM, ALSO CALLED EUBACTERIA. Many are common infectious agents. THIS IS A PICTURE OF BACTERIA ON THE SKIN. BACTERIA CAN BE SHAPED LIKE A SPHERE (COCCI) LIKE THIS PICTURE, LIKE A ROD, OR LIKE A SPIRAL. THE STRUCTURE IN THE MIDDLE OF THIS PICTURE IS A HAIR FOLLICLE WITH A HAIR GROWING OUT OF IT. DOMAIN EUKARYOTA (EUKARYA) • EUKARYOTIC • VERY DIVERSE • UNICELLULAR OR MULTICELLULAR • AUTOTROPHIC OR HETEROTROPHIC • REPRODUCE SEXUALLY OR ASEXUALLY • CAN BE SPLIT INTO 4 KINGDOMS• PROTISTA • FUNGI • PLANTAE • ANIMALIA THE 4 KINGDOMS IN EUKARYOTA Protista Plantae Mostly unicellular and microscopic Autotrophic or heterotrophic Can be infectious agents Multicellular green plants Autotrophic through photosynthesis Have a cell wall Examples: •Amoeba •Algae •Daphnia •Plasmodium (causes malaria) Examples: •Mosses •Ferns •Trees •Flowering Plants Fungi Animalia Multicellular Heterotrophic Decomposers Can be infectious agents Multicellular Animals Heterotrophic No Cell Wall Examples: •Mushrooms •Athlete’s foot •Bread Mold Examples: •Insects •Spiders •Crabs •Birds •Humans D O M A I N S K I N G D O M S FIVE-KINGDOM CLASSIFICATION • STARTING FROM THE TIME OF ARISTOTLE FOLLOWED BY LINNAEUS, MOST OF THE BIOLOGIST CLASSIFY LIVING ORGANISMS INTO TWO MAJOR KINGDOMS- ANIMALIA AND PLANTAE. • DURING THE EARLY 1960S, HOWEVER BIOLOGISTS STARTED TO REALIZE THAT SOME ORGANISMS DO NOT FIT COMPLETELY FIT INTO EITHER THE PLANT OR THE ANIMAL KINGDOM. • IN ORDER TO ACCOMMODATE THESE ORGANISMS, TAXONOMISTS PROPOSED THE FIVE-KINGDOM SYSTEM FIVE-KINGDOM SYSTEM OF CLASSIFICATION • KINGDOM MONERA (TRUE BACTERIA, BACTERIA-LIKE ORGANISMS, AND BLUE GREEN ALGAE) • KINGDOM PROTISTA (PROTOZOANS AND ALGAE) • KINGDOM PLANTAE (PLANTS) • KINGDOM ANIMALS (ANIMALS) • KINGDOM FUNGI (FUNGI, MOLDS, YEASTS) SIX-KINGDOM SYSTEM OF CLASSIFICATION • IN LINE WITH THE THREE DOMAIN OF LIFE, THE SIX-KINGDOM SYSTEM HAS BEEN ADOPTED TO REFLECT THE DIFFERENCE BETWEEN BACTERIA AND ARCHAEA. • IN THIS SYSTEM OF CLASSIFICATION, KINGDOM MONERA IN THE FIVEKINGDOM SYSTEM WAS REPLACED AND DIVIDED INTO TWO DISTINCT GROUPS, KINGDOM EUBACTERIA AND KINGDOM ARCHAEA. KINGDOM EUBACTERIA • MOST DIVERSE AND WIDESPREAD AMONG THE PROKARYOTES. • SMALLER AND MICROSCOPIC IN SIZE • SINGLE-CELLED ORGANISMS • REPRODUCE ASEXUALLY VIA BINARY FISSION • PLAY VARIOUS ROLE IN ECOSYSTEM AS PRODUCER, CONSUMER AND DECOMPOSER. KINGDOM ARCHAEA • FIRST DISCOVERED IN 1983 WHEN SCIENTISTS TOOK SAMPLES FROM A HOT VENT IN EARTH’S INTERIOR UNDER PACIFIC OCEAN. • DUE TO THEIR ABILITY TO WITHSTAND THE HARSHEST ENVIRONMENTS, THEY ARE ALSO CALLED AS EXTREMOPHILES. ARCHAEANS CLASSIFICATION BASED ON HABITAT THEY OCCUPY • HALOPHILES = THRIVE IN EXTREMELY SALTY ENVIRONMENTS SUCH AS SALT LAKES, SEAWATER-EVAPORATING PONDS AND BRINE SOLUTIONS. • METHANOGENS = ANAEROBIC ARCHAEANS THAT RELEASE METHANE. THEY SURVIVE IN SWAMPS, HOT SPRINGS, SEWAGE, FRESHWATER MARSHES, AS WELL AS INTESTINAL TRACTS OF HUMANS AND RUMINANTS. • THERMOPHILES = LIVE IN VERY HOT TEMPERATURE, USUALLY 100 DEGREES CELSIUS. KINGDOM PROTISTA • MOST PRIMITIVE BUT MOST DIVERSE AMONG UNICELLULAR EUKARYOTIC ORGANISMS. • HAVE A DISTINCT CELL NUCLEUS AND MEMBRANE-BOUND ORGANELLES, WHICH ALLOW FOR COMPARTMENTALIZATION AND DEDICATION OF SPECIFIC AREAS OF THE CELL FOR SPECIFIC FUNCTIONS. • SERVE AS STEM GROUP FOR THE FUNGI, PLANTS AND ANIMALS. • INCLUDES ALGAE, EUGLENOIDS, CILIATES, PROTOZOANS, AND FLAGELLATES. KINGDOM PLANTAE • MULTICELLULAR EUKARYOTIC ORGANISM THAT ARE ALL AUTOTROPHIC. • REFERRED TO AS PRODUCERS • DIVIDED INTO TWO GENERAL GROUPS: VASCULAR PLANTS AND NONVASCULAR PLANTS • GYMNOSPERMS HAVE NAKED SEEDS WHEREIN OVULES AND SEEDS ARE NOT PROTECTED BY A FLOWER OR FRUIT TISSUE. • ANGIOSPERMS HAVE THEIR SEEDS ENCLOSED WITHIN THE PROTECTIVE WALL OF OVARY. KINGDOM FUNGI • ORGANISMS WHOSE ANCESTORS EXISTED ON EARTH MORE THAN 900 MILLION YEARS AGO BASED ON FOSSIL RECORDS. • INCLUDE MEMBERS FROM MUSHROOMS, YEASTS, MOLDS, MILDEWS, RUSTS, BRACKET FUNGI, AND MANY MORE. • MOST FUNGI ARE SAPROPHYTIC (ABSORBS FROM DEAD ORGANISMS) AND PARASITIC ( ABSORB NUTRIENTS FROM LIVING THINGS). KINGDOM ANIMALIA • MULTICELLULAR ORGANISMS WITHOUT CELL WALLS OR CHLOROPHYLL AND ARE ALL HETEROTROPHIC. • ANIMALS OCCUPY THE LEVEL OF CONSUMERS: • HERBIVORES = PLANT-EATERS • CARNIVORES = ANIMAL-EATERS • OMNIVORES = PLANT AND ANIMAL EATERS • DETRIVORES = DEAD-EATERS • ANIMALS ARE CLASSIFIED AS: • VERTEBRATES = ANIMALS WITH BACKBONE • INVERTEBRATES = ANIMALS WITHOUT BACKBONE KINGDOM • KINGDOM IS A TAXONOMIC RANK THAT IS COMPOSED OF SMALLER GROUPS CALLED PHYLA. • KINGDOM IS THE HIGHEST TAXONOMIC RANK, OR THE MOST GENERAL TAXON USED IN CLASSIFYING ORGANISMS. • IN THE NEW THREE-DOMAIN SYSTEM INTRODUCED BY CARL WOESE IN 1990, THE DOMAIN IS THE MOST GENERAL TAXON, AND KINGDOM IS ONLY NEXT. PHYLA • A TAXONOMIC RANK AT THE LEVEL BELOW KINGDOM AND ABOVE CLASS IN BIOLOGICAL CLASSIFICATION, ESPECIALLY OF ANIMALS. • A GROUP OF CLASSES WITH SIMILAR DISTINCTIVE CHARACTERISTICS. CLASSES • A GROUP OR SET (OF THINGS OR ENTITIES) WITH COMMON CHARACTERISTICS, ATTRIBUTES, QUALITIES OR TRAITS. • A TAXONOMIC GROUP COMPRISED OF ORGANISMS THAT SHARE A COMMON ATTRIBUTE. IT IS FURTHER DIVIDED INTO ONE OR MORE ORDERS. ORDER • A TAXONOMIC RANK USED IN CLASSIFYING ORGANISMS, GENERALLY BELOW THE CLASS, AND COMPRISED OF FAMILIES SHARING A SET OF SIMILAR NATURE OR CHARACTER. FAMILY • A TAXONOMIC RANK IN THE CLASSIFICATION OF ORGANISMS BETWEEN GENUS AND ORDER. • A TAXONOMIC GROUP OF ONE OR MORE GENERA, ESPECIALLY SHARING A COMMON ATTRIBUTE. • A COLLECTION OF THINGS OR ENTITIES GROUPED BY THEIR COMMON ATTRIBUTES, E.G. PROTEIN FAMILY, GENE FAMILY, ETC. • A GROUP OF PEOPLE DESCENDED FROM A COMMON ANCESTOR; A KIN; A TRIBE. • A FAMILY IS MORE PRECISE THAN ORDERS BUT LESS PRECISE THAN GENERA. ORGANISMS BELONGING TO THE SAME FAMILY WOULD HAVE EVOLVED FROM THE SAME ANCESTORS AND SHARE RELATIVELY COMMON CHARACTERISTICS. GENUS • TAXONOMIC CATEGORY RANKING USED IN BIOLOGICAL CLASSIFICATION THAT IS BELOW FAMILY AND ABOVE SPECIES. • BIOLOGICAL GENUS IS DEFINED AS A TAXONOMIC RANK COMPRISED OF SPECIES WITH COMMON ATTRIBUTES. IT INCLUDES GROUP(S) OF SPECIES THAT ARE STRUCTURALLY SIMILAR OR PHYLOGENETICALLY RELATED. SPECIES • THE LOWEST TAXONOMIC RANK, AND THE MOST BASIC UNIT OR CATEGORY OF BIOLOGICAL CLASSIFICATION. • AN INDIVIDUAL BELONGING TO A GROUP OF ORGANISMS (OR THE ENTIRE GROUP ITSELF) HAVING COMMON CHARACTERISTICS AND (USUALLY) ARE CAPABLE OF MATING WITH ONE ANOTHER TO PRODUCE FERTILE OFFSPRING. BIODIVERSITY • Refers to the variety of living species on earth, including plants, animals, bacteria, and fungi. The earth’s magnificent biodiversity at risk. • Used to describe the enormous variety of life on earth. It can be used more specifically to refer to all of the species in one region or ecosystem. LEVELS OF BIODIVERSITY The diversity in life-forms occur at the following levels: • Genetic diversity • Species diversity • Ecosystem diversity GENETIC DIVERSITY • Refers to both the vast numbers of different species as well as the diversity within a species. • The greater the genetic diversity within a species, the greater that species’ chances of long-term survival. • This is because negative traits (such as inherited diseases) become widespread within a population when that population is left to reproduce only with its own members. SPECIES DIVERSITY • The number of species and abundance of each species that live in a particular location. The number of species that live in a certain location is called species richness. ECOSYSTEM DIVERSITY • Deals with the variations in ecosystems within a geographical location and its overall impact on human existence and the environment. • Ecological diversity is a type of biodiversity. It is the variation in the ecosystems found in a region or the variation in ecosystems over the whole planet.