1 PREFACE iii LABORATORY SAFETY GUIDELINES iv EXPERIMENT 1A THE CELL 4 EXPERIMENT 1B QUALITATIVE DETERMINATION OF SUBCELLULAR COMPONENTS 9 EXPERIMENT 2A PROTEIN 14 EXPERIMENT 2B PROTEIN DENATURATION 19 EXPERIMENT 3A ENZYME 25 EXPERIMENT 3B FACTORS AFFECTING ENZYMATIC REACTIONS 30 EXPERIMENT 4A NUCLEIC ACID 35 EXPERIMENT 4B ANALYSIS OF NUCLEIC ACID 40 EXPERIMENT 5A LIPIDS 45 EXPERIMENT 5B ANALYSIS OF BRAIN LIPIDS 52 EXPERIMENT 6A GENERAL TESTS FOR CARBOHYDRATES 57 EXPERIMENT 6B QUALITATIVE ANALYSIS OF CARBOHYDRATES 62 EXPERIMENT 7A URINALYSIS: NORMAL CONSTITUENTS 67 EXPERIMENT 7B URINALYSIS: PATHOLOGICAL CONSTITUENTS 72 2 EXPERIMENT 1A THE CELL Biochemistry is a study of the molecules found in living organisms and the chemical processes these molecules undergo. To fully understand its concept, it is necessary to be acquainted on the different cellular organelles where these processes are occurring. This can be done by disrupting the cell through homogenization then separation through differential centrifugation. By centrifugation, the organelles are separated according to its density. This experiment lets you perform the homogenization and centrifugation techniques and will prepare the samples to be used in the next experiment. OBJECTIVES To be able to isolate the components of cell To identify the biomolecule components of cell organelles To appreciate the biochemical systems that maintain life PRE-LAB ASSIGNMENT 1. What is differential centrifugation? 2. Look for the densities of the different organelles. WHAT TO BRING 7 grams chicken liver (keep frozen before use) MATERIALS Beakers Test tubes Blender Test tube rack Scalpel Stirring rod Graduated cylinder Test tube brush Centrifuge Filter paper REAGENTS 0.025M sucrose solution Distilled water 3 PROCEDURE A. HOMOGENIZATION OF LIVER 1. Thaw the liver first. 2. Wash the thawed liver with distilled water then with sucrose solution. 3. Place the liver in a filter paper to thoroughly dry it. 4. Minced the liver in a watch glass using scalpel and transfer in a beaker. 5. Add 35ml of sucrose solution and homogenize using a blender for 5-10 minutes. 6. Transfer the homogenate in test tubes for centrifugation. B. DIFFERENTIAL CENTRIFUGATION 1. Centrifuge the homogenate at 2rpm in 5 minutes. 2. Decant and label the residue as sediment I. 3. Centrifuge the supernatant at 5rpm in 15 minutes and decant. Label residue as sediment II. 4. Centrifuge the supernatant at 8rpm for 20 minutes and decant. Label residue as sediment III and supernatant as supernatant III. 5. Seal the samples and keep in refrigerator until next lab period. See diagram for the flow: HOMOGENIZED LIVER SAMPLE CENTRIFUGE (5mins) SEDIMENT I SUPERNATANT CENTRIFUGE (15mins) SUPERNATANT SEDIMENT II CENTRIFUGE (20mins) SUPERNATANT III SEDIMENT III 4 POST-LAB QUESTIONS 1. Explain the process of homogenization and the purposes of each solvent added. 2. What is the significance of the different speed being used in each level of centrifugation? 3. What organelles are separated in each centrifugation? CONCLUSIONS 5 EXPERIMENT 1B QUALITATIVE DETERMINATION OF SUBCELLULAR COMPONENTS Any complex living organism originates from simple elements like carbon, hydrogen, oxygen and may be nitrogen or phosphorus. These elements combine to form the biomolecules like carbohydrates, proteins, nucleic acids, and lipids. These biomolecules in turn, make up each organelle found in the living cell. In order to analyze the composition of these organelles, one should have an idea of the molecular composition of the organelle itself. The different tests that will be encountered in this experiment will give you an idea of the composition of the cell itself. OBJECTIVES To perform the different qualitative tests in the differentiated samples in 1A To identify the biomolecules present in the samples To be acquainted on the different chemical tests that may be encountered in biochemistry laboratory PRE-LAB ASSIGNMENT Give the purpose and the positive indicator of the different tests found in this experiment. WHAT TO BRING Samples prepared from Experiment 1A MATERIALS Beakers Test tube brush Stirring rod Test tube holder Graduated cylinder Filter paper Centrifuge Water bath Test tubes Hot plate Test tube rack 6 REAGENTS Diphenylamine solution 6M NaOH Molisch Reagent 0.5% CuSO4 Conc. H2SO4 Sudan III reagent PROCEDURE SAMPLES:Sediment I, Sediment II, Sediment III and Supernatant III. For sediment samples, dissolve in 10ml of homogenizing solution A. DISCHE DIPHENYLAMINE TEST 1. Place 2 ml each of samples in a test tube. 2. Add 3 ml of diphenylamine solution to each test tube and mix. 3. Heat in water bath for 10 minutes and cool in an ice bath. A clear tube means absent, a blue color indicates DNA while greenish color indicates RNA. B. MOLISCH TEST 1. In two test tubes place 1ml each of the samples. 2. Add to each tube, 3-5 drops of Molisch reagent and mix well. 3. To each test tube, add 1 ml concentrated sulfuric acid along the side of the walls of the inclined tube and do not mix to observe the change in color at the junction of the two liquids. Record your observation. C. BIURET TEST 1. Mix 1.0 ml of sample and 10 drops of 6M sodium hydroxide solution in a test tube. 2. Add 2 drops of 0.5% copper sulfate solution. Mix well and record your observation. D. SUDAN III TEST 1. Place the last portion of residue II in a test tube. 2. Add dichloromethane drop by drop until all sample dissolves. 3. Add one drop of Sudan III reagent. 4. Red color will appear if fat is present. 7 DATA SHEET Name: ______________________________ Date: ________________ Yr. & Sec.: ______________________ Group No. ____ Rating: _______________ QUALITATIVE DETERMINATION OF SUBCELLULAR COMPONENTS EXPERIMENT 1B TESTS OBSERVATIONS RESULTS A. DISCHE TEST B. MOLISCH TEST C. BIURET TEST D. SUDAN TEST 8 POST-LAB QUESTIONS 1. What are the substances tested in each test? What are its theoretical results? 2. What biomolecules are present in the samples analyzed based on the results of your experiment? 3. Explain the results gathered from each test in comparison to the theoretical or expected results. CONCLUSIONS 9 EXPERIMENT 2A PROTEINS Protein is the most abundant substance in the cell next to water, comprising 15% of its over-all mass. Protein is composed of amino acids as its building block. It is linked together with peptide bonds with a positive charged nitrogen-containing group at one end and a negatively charged carboxyl-group. Along the chain is a series of different side chains from different amino acids. Some side chains are neutral, some are acidic, some are basic, and some are classified as polar or nonpolar. The different tests in this experiment will help you identify the different types of amino acids present in a protein sample. OBJECTIVES To perform qualitative test for different types of proteins To identify proteins based on the different tests performed Relate the test results to the chemical structure of each protein or amino acid PRE-LAB ASSIGNMENT For the following tests, research on what is the purpose of the test, the reagents involved in the test, and its positive indicator: A. Biuret Test B. Ninhydrin Test C. Hopkins-Cole Test D. Sakaguchi Test E. Xanthoproteic Test WHAT TO BRING Aspartame or Equal (5 tabs or 1 sachet) 1 fresh chicken egg 1 small tetra pack evaporated milk 10 MATERIALS Graduated cylinder Test tube holder Beaker Test tube brush Stirring rod Hot plate Test tubes Water bath Test tube rack REAGENTS Distilled water Hopkins-Cole reagent 6M NaOH Concentrated H2SO4 50% NaOH 0.2% α-naphthol solution 0.5% CuSO4 solution Sodium hypochlorite Ninhydrin solution Concentrated HNO3 PROCEDURE A. SAMPLE PREPARATION 1. Egg Albumin Solution – Mix 5 ml of egg white in 45ml water 2. Aspartame or Equal – Dissolve 5 tabs in 15.0ml water or 1 sachet in 15.0 ml water 3. Evaporated Milk – Mix 10ml of evaporated milk in 40ml water B. HOPKINS-COLE TEST 1. Add 2.0 ml of Hopkins-Cole reagent to 2.0 ml of protein sample in a test tube and mix thoroughly. 2. Tilt the test tube and carefully pour along one side the tube 1.0 ml of concentrated sulfuric acid. 3. Hold the test tube in an upright position and observe the color of the ring formed at the interface of the two liquids. (if no ring is visible, gently agitate the tube to cause a very slight mixing at the surface) 4. Record your observations. 11 C. BIURET TEST 1. Mix 1.0 ml of protein sample and 10 drops of 6M sodium hydroxide solution in a test tube. 2. Add 2 drops of 0.5% copper sulfate solution. Mix well and record your observation. D. NINHYDRIN TEST 1. Add 10 drops of ninhydrin solution to 2.0ml of protein sample. Mix thoroughly. 2. Heat the test tubes in boiling water bath until a color change is observed. 3. Compare the results. E. SAKAGUCHI TEST (Strictly observe the order of addition of reagents) 1. To 5.0-ml of protein sample, add 1.0 ml of 6M sodium hydroxide solution. Mix thoroughly. 2. Add 1.0-ml of 0.2% α-naphthol solution. Mix thoroughly. 3. After 3 munities, add 5 drops of sodium hypochlorite. 4. Immediately note the color of the resulting solution because it fades quickly. Record observations. F. XANTHOPROTEIC TEST 1. Add 0.5-ml of concentrated nitric acid to 1.0-ml protein sample. 2. Mix with a stirring rod and warm in water bath for 5 minutes. Note the color of precipitate 3. Cool the contents then make it basic by adding 50% sodium hydroxide. 4. Note the changes. 12 DATA SHEET Name: ______________________________ Date: ________________ Yr. & Sec.: ______________________ Group No. ____ Rating: _______________ PROTEINS EXPERIMENT 2A TESTS OBSERVATIONS RESULT A. HOPKINS-COLE TEST B. BIURET TEST C. NINHYDRIN TEST D. SAKAGUCHI TEST G. XANTHOPROTEIC TEST 13 POST-LAB QUESTIONS 1. What is the principle behind each test? Give general chemical equation. 2. What group of amino acids is identified in each test? 3. Account for the difference in color intensity between each samples (if there are any) 4. Are all the proteins positive for all tests? Why or why not? CONCLUSIONS 14 EXPERIMENT 2B PROTEIN DENATURATION Protein denaturation is the modification in conformation of protein accompanied by disruption and possible destruction of secondary, tertiary and quaternary structure of protein. This is brought upon by different types of agents like heat, mechanical disturbance, inorganic and organic substances and etc. Loss of solubility in water is the frequent consequence of protein denaturation. When denatured protein precipitates out, it is called coagulation. This experiment help you understand the effects brought about by some of these agents that cause denaturation of proteins. OBJECTIVES To observe the effects of several denaturing reagents on a protein sample To differentiate the effect of these denaturing reagents to the protein sample PRE-LAB ASSIGNMENT 1. Define denaturation. 2. What physical and chemical agents are capable of denaturing proteins? Give the type of bonds or attractive forces disrupted by these agents. WHAT TO BRING 1 fresh chicken egg MATERIALS Graduated cylinder Test tube holder Beaker Test tube brush Stirring rod Hot plate Test tubes Water bath Test tube rack 15 REAGENTS Distilled water 10% BaCl2 Albumin Concentrated H2SO4 95% ethanol Concentrated HNO3 70% ethanol Picric acid 10% AgNO3 Tannic acid 10% CuSO4 Trichloroacetic acid PROCEDURE A. Sample Preparation for Proteins Egg Albumin Solution – Mix 5 ml of egg white in 45ml water Standard – 2 ml sample of the prepared albumin solution (untreated) B. EFFECT OF HEAT 1. Place to 2.0 ml of albumin solution in a test tube and heat in boiling water for 5 minutes. 2. Compare the results with the standard. C. EFFECT OF ALCOHOL 1. Label two test tubes as 1 and 2. 2. Add 3.0 ml of albumin solution in each test tube. 3. To tube no.1, add 5 ml of 95% ethanol and to tube no. 2, 5 ml of 70% ethanol. 4. Compare the results with the standard. 5. Record your observations as no precipitation, slight precipitation, and heavy precipitation. 16 D. EFFECT OF HEAVY METALS 1. Place 2.0 ml of albumin solution in 3 separate test tubes and add the following reagents: a. 1 ml of 10% AgNO3 b. 1 ml of 10% CuSO4 c. 1 ml of 10% BaCl2 2. Shake all the test tubes. 3. Note the color of the precipitates formed. Set aside for 5 minutes. 4. Tabulate and compare the results with the standard. 5. Decant the supernatant liquid and test the solubility of a small portion of the precipitate in 5.0 ml water. E. EFFECT OF STRONG MINERAL ACIDS 1. Place 2.0 ml of albumin solution in 2 separate test tubes and add the following reagents: a. 1 ml of concentrated H2SO4 b. 1 ml of concentrated HNO3 2. Mix thoroughly. 3. Compare the results with the standard. F. EFFECT OF ALKALOIDAL REAGENTS 1. Place 2.0 ml of albumin solution in 2 separate test tubes and add the following reagents: a. 1 ml of picric acid b. 1 ml of tannic acid c. 1 ml of trichloroacetic acid 2. Shake all test tubes gently. Note the color of precipitate formed. 3. Compare with the standard. 17 DATA SHEET Name: ______________________________ Date: ________________ Yr. & Sec.: ______________________ Group No. ____ Rating: _______________ PROTEIN DENATURATION EXPERIMENT 2B DENATURING OBSERVATIONS AGENTS COMPARISON TO STANDARD HEAT 95% Ethanol ALCOHOL 70% Ethanol AgNO3 HEAVY CuSO4 METALS BaCl2 18 H2SO4 STRONG MINERAL ACIDS HNO3 Picric acid ALKALOIDAL Tannic acid REAGENTS Trichloroacetic acid 19 POST-LAB QUESTIONS 1. Explain how each of the agents causes denaturation of the protein. 2. Explain the differences of the reagents in each test. 3. Give ONE practical application of each agent presented. CONCLUSIONS 20 EXPERIMENT 3A ENZYMES Enzymes are substances that act as a catalyst for biochemical reactions by finding a pathway which has lower activation energy. Each enzyme has an active site where the chemical reactions occur. The reactant of the said chemical reaction is called substrate. One amazing property of enzymes is its high specificity; it only acts to a specific substrate or group of substrates. For example, alcohol dehydrogenase is an enzyme that oxidizes group of alcohols to aldehyde to carboxylic acid. On the other hand, enzyme like lactase is only specific for the substrate lactose that breaks it to glucose and galactose. In this experiment, you will experience the action of some enzymes to its specific substrate. OBJECTIVES Demonstrate the catalytic action of enzymes through different organic specimen Recognize the specificity of enzymes to its substrate Identify the products of each reaction through different color tests Describe the role of enzyme in digestive processes PRE-LAB ASSIGNMENT For the following enzymes, research on the role or function of each enzyme in biological system and give one example: A. Amylase B. Oxidase C. Protease D. Rennin WHAT TO BRING Potato Saliva Evaporated milk Cheesecloth 21 MATERIALS Graduated cylinder Test tube brush Beaker Hot plate Stirring rod Water bath Test tubes Thermometer Test tube rack Blender Test tube holder REAGENTS Distilled water 0.2% HCl solution 1% starch solution Casein Benedict’s reagent Calcium chloride solution Phosphate buffer with pH 6.0 Saturated ammonium oxalate Freshly prepared 0.2% Catechol solution 1% rennin solution 1% pepsin PROCEDURES A. AMYLASE 1. Put 1.0 ml of 1% starch solution on each two test tubes. 2. To one test tube, add 1.0ml saliva. 3. Mix both thoroughly and place in a water bath set for 37oC for 10 minutes. (Make sure temperature does not raise more than 40oC) 4. Set aside and cool. 5. Add to each test tube 3.0 ml Benedict’s reagent and warm in a boiling water bath for 5 minutes. Note the color and precipitate of both test tubes. B. OXIDASE 1. Wash and peel a potato. 2. Grate the potato into 100ml of water. Blender may be used. 22 3. Transfer the potato solution onto cheesecloth and filter the extract through a filter paper. 4. Add 5 ml each of filtrate into two test tubes. 5. Place on test tube in water bath for 10 minutes and set aside the other test tube for comparison. 6. Place 0.5ml of phosphate buffer with pH 6.0 and 2 ml freshly prepared 0.2% Catechol solution into both test tubes. 7. Allow the test tubes to stand for 30 minutes and observe the result after. C. PROTEASE 1. Place 5 ml each of 1% pepsin dissolved in 0.2% HCl solution into two separate test tubes. 2. Heat the test tubes to boiling for 1 minute. 3. Let it cool. 4. To one test tube, add 0.5 g casein. 5. Place both test tubes in a beaker of water at 40oC for at least 30 munities. 6. Add 0.5ml of CaCl2 solution to each test tube and compare the results. Take note of the precipitation. D. RENIN 1. Place 5 ml each of evaporated milk in two test tubes. 2. To one test tube, add 12 drops of saturated ammonium oxalate and mix. 3. Add 1ml of 1% rennin solution to both test tubes and heat in water bath at 40oC for 20 minutes. 4. Observe and compare the results. 23 DATA SHEET Name: ______________________________ Date: ________________ Yr. & Sec.: ______________________ Group No. ____ Rating: _______________ ENZYMES EXPERIMENT 3A ENZYME OBSERVATIONS RESULT A. AMYLASE B. OXIDASE C. PROTEASE D. RENIN 24 POST-LAB QUESTIONS 1. Explain the mechanism of enzyme action on its substrate presented in the experiment. Identify which one is the substrate and the product of each digestion performed. 2. Explain the specificity of enzymes on its substrate. 3. Give the theoretical results of each test performed and explain the results based on the theoretical results. CONCLUSIONS 25 EXPERIMENT 3B FACTORS AFFECTING ENZYME ACTIVITY Enzymes are known to catalyze a lot of biochemical reactions. Some enzymes can increase the reaction rate many million times faster than without a catalyst. An example is OMP, orotidylate decarboxylase, catalyzing 1017 times faster than uncatalyzed reaction. This means that reaction that would take 78 million years will only take 18 milliseconds with the enzyme OMP. Enzymes are mostly globular proteins. Some are simple proteins, some are conjugated proteins. Their action on the substrate can be controlled by adjusting the temperature, pH, or substrate or enzyme’s concentration. Further, since they are proteins, they also affected by agents that causes them to undergo denaturation. This experiment shows the effect of these factors on enzymatic reactions. OBJECTIVES Describe the effect of the factors presented in the experiment on enzyme’s activity. Relate the factors to human enzymatic metabolic activities. PRE-LAB ASSIGNMENT Give the factors affecting enzyme activity and give the normal conditions for each factor to make enzyme perform in its optimum activity. WHAT TO BRING 10 – 15 ml of Saliva REAGENTS Distilled water Buffer solution at pH 4 1% starch solution Buffer solution at pH 7 Iodine Buffer solution at pH 10 26 MATERIALS Graduated cylinder Test tube brush Beaker Hot plate Stirring rod Water bath Test tubes Thermometer Test tube rack Blender Test tube holder PROCEDURES A. EFFECT OF TEMPERATURE 1. Label three clean and dry test tubes as A1, A2 and A3. Into each test tube place 1.0 ml of saliva. 2. Place A1 in an ice bath, place A2 in water bath with temperature of maintaining 37oC, and place A3 in boiling water, all for 5 minutes. 3. To each test tube, add 2.0 ml of 1% starch and leave for 10 minutes. 4. After 10 minutes, add 2 drops of iodine. 5. Note and record the color. Rate the intensity of color from 1- 3, 1 being colorless. B. EFFECT OF pH 1. Label three clean and dry test tubes as B1, B2 and B3. Into each test tube place 2.0 ml of 1% starch solution. 2. Place in B1 2.0ml of buffer solution at pH 4, place in B2 2.0ml of buffer solution at pH 7, place in B3 2.0ml of buffer solution at pH 10. 3. Make sure in this step, the saliva is added simultaneously to all test tubes. To each test tube, add 1.0 ml saliva. 4. Warm all test tubes in 37oC water bath for 10 minutes. 5. After heating, add 2 drops of iodine solution. 6. Note and record the color. Rate the intensity of color from 1- 3, 1 being colorless. 27 C. EFFECT OF ENZYME CONCENTRATION 1. Label four clean and dry test tubes as C1, C2, C3 and C4. Into each test tube place 2.0 ml of 1% starch solution. 2. Place one drop of iodine solution in each test tube and stir. 3. In another test tube, place 2.0 ml saliva and warm at 37 oC for 5 minutes. 4. To test tube C2, add 3 drops of saliva and record the time of digestion (become colorless). Use C1 as the control (no digestion). 5. Repeat step 4 for test tube C3 using 6 drops of saliva and C4 using 10 drops of saliva. 6. Record the time of digestion and rate the degree of digestion from 1-4, 1 being no digestion. 28 DATA SHEET Name: ______________________________ Date: ________________ Yr. & Sec.: ______________________ Group No. ____ Rating: _______________ FACTORS AFFECTING ENZYME ACTIVITY EXPERIMENT 3B FACTORS VARIATIONS OBSERVATIONS RESULT A1 A. EFFECT OF TEMPERATURE A2 A3 B1 B. EFFECT OF pH B2 B3 C1 C. EFFECT OF ENZYME C2 CONCENTRATION C3 29 POST-LAB QUESTIONS 1. Explain how the factors affect the enzyme activity and relate to human metabolic activities. 2. Give the theoretical results of each factor and explain of it coincides with the results of your experiment. 3. Give possible causes of errors. CONCLUSIONS 30 EXPERIMENT 4A NUCLEIC ACID Nucleic acid is one of the biomolecules which is compose of monomer units called nucleotides. A nucleotide is a three-subunit molecule composing of a pentose sugar bonded to the phosphate group and a nitrogen-heterocyclic base. If the nucleotide is made up of a ribose sugar, it is named as ribonucleotide. If it is a deoxyribose sugar then it is named as deoxyribonucleotide. The polymers are called ribonucleic acid (RNA) and deoxyribonucleic acid (DNA) respectively. In this experiment you will learn how to extract DNA from plant tissue. OBJECTIVES Extract DNA from plant tissue Describe each procedure done during the extraction Identify the sugar in the extracted DNA through a qualitative test PRE-LAB ASSIGNMENT 1. Differentiate DNA from RNA 2. What are the factors that stabilize and destabilize the DNA structure? WHAT TO BRING 2 white onion bulbs or 2 pieces banana or 5 pieces strawberries Coffee filter paper or gauge MATERIALS Graduated cylinder Test tube rack Beaker Test tube holder Stirring rod Test tube brush Blender Hot plate Test tubes Water bath 31 REAGENTS Distilled water Diphenylamine solution 95% ethanol Standard Saline Citrate Solution 1% glucose solution, 1% ribose solution, 1% deoxyribose solution PROCEDURE ***Make two sets of experiment, one for today’s analysis and one for the next session A. Preparation of materials and reagents 1. Place 20ml 95% ethanol in the refrigerator to chill it. You will use this in procedure no. 12. 2. Homogenizing solution. In a 250-ml beaker add 120ml hot distilled water, 1.5 gram NaCl, and 5 ml dishwashing liquid. Mix them together using a clean stirring rod slowly to avoid foaming of the soap. B. Extraction of DNA 1. Coarsely chop the onions or banana in small cubes (do not chop too finely) and blend for 30 seconds. 2. Add 50ml homogenizing solution and blend again. 3. Filter the mixture in a beaker through a coffee filter or gauze. When you filter, try to keep the foam from getting into the filtrate. 4. Take the 95% ethanol out of the freezer and place slowly about 15ml to the filtrate using a graduated cylinder. 5. Let the mixture stand for 5-10 minutes undisturbed. Observe for a bubble formation and DNA will precipitate out of the solution. DNA will appear as white filamentous material in the ethanol layer. ***For the other set-up, leave it overnight. 6. Spoon the DNA with stirring rod and add SSC solution. 32 C. Analysis of the extracted DNA: Diphenylamine Test 1. Prepare four test tubes with the label: glucose, ribose, deoxyribose, and extracted DNA. 2. Place 2 ml each of the following solutions that corresponds their labels: 1% glucose solution, 1% ribose solution, 1% deoxyribose solution, and 1% extracted DNA solution. 3. Add 3 ml of diphenylamine solution to each test tube and mix. 4. Heat in water bath for 10 minutes and cool in an ice bath. 33 DATA SHEET Name: ______________________________ Date: ________________ Yr. & Sec.: ______________________ Group No. ____ Rating: _______________ NUCLEIC ACID EXPERIMENT 4A PROCEDURE OBSERVATIONS RESULT A. EXTRACTION B. ANALYSIS 34 POST-LAB QUESTIONS 1. What is the general structure of ribonucleotide and deoxyribonucleotide. Explain the difference. 2. What are the levels of the structure of either RNA or DNA? 3. Explain the purposes of each step done in the procedure of extracting DNA. 4. What is the purpose of diphenylamine test? What is the chemical reaction involved in this test? CONCLUSIONS 35 ANALYSIS OF NUCLEIC ACIDS EXPERIMENT 4B Most of the cellular DNA is found in the nucleus of the cell. These DNA molecules are compose of a series of nucleotides, arranged accordingly. Nucleotides, the building blocks of nucleic acid are joined by phosphodiester bonds. The monomeric nucleotides of DNA are composed of adenine, guanine, cytosine and thymine. While in RNA another nucleotide is present, uracil. Adenine and guanine are called purine bases while cytosine, thymine and uracil are called pyrimidine bases. The qualitative analysis of DNA sample will depend on the hydrolysis of its chain to nucleotides and hydrolysis of nucleotides to phospohorus, deoxyribose, and purine or pyrimidine bases. To analyze the individual components of nucleotide, different tests are performed in this experiment. OBJECTIVES To qualitative test the DNA sample gathered from experiment 4A Differentiate unhydrolyzed DNA to acid hydrolyzed DNA PRE-LAB ASSIGNMENT 1. Give the chemical reaction for the hydrolysis of DNA using sulfuric acid. 2. Look for the positive/expected results of the following tests: a. Benedict’s Test b. Test for Purine c. Bial’s Test d. Test for Phosphate WHAT TO BRING Marble for test tube cover 36 MATERIALS Graduated cylinder Test tube rack Beaker Test tube holder Stirring rod Test tube brush Blender Hot plate Test tubes Water bath REAGENTS Distilled water 1% silver nitrate 10% sulfuric acid Bial’s reagent Benedict’s reagent 6N nitric acid 1% ammonium hydroxide Ammonium molybdate PROCEDURES A. Acid hydrolysis 1. Divide the gathered DNA into two test tubes. Labeling test tube A for hydrolyzed and B for unhydrolyzed. 2. In test tube A, place 10ml of 10% sulfuric acid. To test tube B, add 10ml distilled water and divide into four test tubes. Set aside. 3. Cover the test tube A with marble and heat at 60oC in a water bath for one hour. Maintain the temperature. 4. After heating, cool test tube A at room temperature and centrifuge at 2rpm for 10 minutes. 5. Discard precipitate and divide it into four test tubes for the following tests. 37 B. Analysis of DNA ***Perform these tests for the two test solutions: Test tube A and Test tube B 1. BENEDICT’S TEST a. Neutralize the test solution by adding small amount of solid Na2CO3. Test with litmus paper. Let it stand for 2 minutes then decant. b. To 1ml of the test solution add 0.5mL of Benedict’s reagent. Boil in a water bath for 5 minutes or longer. Observe the results 2. TEST FOR PURINE BASES a. Treat 1 ml of the test solution with 1% ammonium hydroxide until basic. Test with litmus paper. Add few drops of 1% silver nitrate solution. Let the mixture stand undisturbed and look for precipitate. 3. BIAL’S TEST a. Mix 1 ml of test solution with 0.5ml of Bial’s reagent. b. Heat in a boiling water bath for 5-10 minutes until you see visible result. 4. TEST FOR PHOSPHATE a. To 1 ml of test solution add 1% ammonium hydroxide until basic. Test with litmus paper. b. Acidify with 6N nitric acid. Test with another litmus paper. c. Add 1 ml of ammonium molybdate and heat in a water bath. Observe result. 38 DATA SHEET Name: ______________________________ Date: ________________ Yr. & Sec.: ______________________ Group No. ____ Rating: _______________ ANALYSIS OF NUCLEIC ACIDS EXPERIMENT 4B TESTS OBSERVATIONS RESULT A A. BENEDICTS B A B. TEST FOR PURINE B A C. BIAL’S TEST B A D. TEST FOR PHOSPHATE B 39 POST-LAB QUESTIONS 1. What substances are tested in each analysis done? Explain why results showed positive or negative. 2. Compare the results of test tube A and B and explain. 3. Cite some factors that may cause errors in the experiment. CONCLUSIONS 40 LIPIDS EXPERIMENT 5A Lipids, one of the major biomolecules in living cells have no common structure unlike proteins, carbohydrates, and nucleic acids. Lipids are defined as organic substances that are insoluble (or sparingly soluble) in water but soluble in organic solvents. This physical characteristic as well as the chemical properties of lipids depends on the presence of carboxyl groups, number of double bonds, number of hydroxyl groups, and length of carbon chains. Referring to its structure, lipids can be divided into simple, compound or derived lipids. Simple lipids are esters of fatty acids and alcohol. Compound lipids are esters of fatty acids and alcohol that contain other functional group. While derived lipids are lipids that contain hydrocarbon rings and a long hydrocarbon side chain. The building blocks of lipids differ from each type but the most common is the fatty acid. This experiment helps you observe and understand the different properties of lipids. OBJECTIVES Learn how to characterize lipids through different tests Identify the type of lipids based on chemical properties PRE-LAB ASSIGNMENT 1. Identify the lipids that are part of simple, compound and derived lipids. 2. Draw the structures of the lipid samples in the experiment. 3. How will the iodine tests the unsaturation of a substance? 4. What is Acrolein test? What it is for? What is its positive indicator? WHAT TO BRING Olive oil Butter Coconut oil Lotion Lecithin 41 MATERIALS Filter paper Test tube rack Graduated cylinder Test tube holder Beaker Test tube brush Stirring rod Hot plate Test tubes REAGENTS Distilled water 1M NaOH Dichloromethane I2 in KI Cyclohexane Potassium bisulfate 1M HCl PROCEDURES A. TRANSLUSCENT EFFECT 1. In a small filter paper, drop a lipid sample. Do this to the five samples separately. If sample is gel-like, dissolve in 1ml dichloromethane. 2. Allow the spots to dry. 3. After drying, hold the filter paper against a light and see any translucent spot. Record your observation. B. SOLUBILITY 1. In four different test tubes add 1ml each of water, dichloromethane, cyclohexane, 1M HCl and 1M NaOH. 2. Add to each test tube three drops of lipid sample and mix thoroughly. Make sure you place strictly three drops of sample on each solvent as solubility is affected by amount. 3. Observe if sample is thoroughly dissolved. See separation of layers to detect miscibility. Record your observations. 4. Repeat the procedure with the four different samples. 42 C. TEST FOR UNSATURATION 1. In six different test tubes place 3ml of ether. Label the test tubes with your different lipid sample and the sixth as negative control. 2. Add the lipid sample in each test tube while add none to the sixth. Mix thoroughly. 3. To the six test tubes add 3 drops of I2 in KI. 4. Shake again and note the changes in color. D. ACROLEIN TEST 1. In a clean crucible, place 0,5gram of potassium bisulfate and one to two drops of lipid sample. Then cover. 2. Heat the sample slowly and note the odor produced. 43 DATA SHEET Name: ______________________________ Date: ________________ Yr. & Sec.: ______________________ Group No. ____ Rating: _______________ LIPIDS EXPERIMENT 5A A. TRANSLUSCENT EFFECT SAMPLES OBSERVATIONS RESULTS Olive oil Coconut oil Lecithin Butter Lotion B. SOLUBILITY SAMPLES WATER DICHLORO METHANE CYCLOHEXANE DILUTE DILUTE HCl NaOH Olive oil Coconut oil Lecithin Butter Lotion 44 C. TEST FOR UNSATURATION SAMPLES OBSERVATIONS RESULTS Olive oil Coconut oil Lecithin Butter Lotion D. ACROLEIN TEST SAMPLES OBSERVATIONS RESULTS Olive oil Coconut oil Lecithin Butter Lotion 45 POST-LAB QUESTIONS 1. What is the purpose of translucent spot test? What is detected by this test? Is it conclusive? Why? 2. Explain the solubility test by comparing the structures of the lipid samples and the solvents. 3. Explain why results in the Test for Unsaturation are positive or negative. 4. What is the principle behind Acrolein test? Explain why results showed positive or negative. CONCLUSIONS 46 EXPERIMENT 5B ANALYSIS OF BRAIN LIPIDS The brain has the second highest component of lipids and is 50% of the brain’s dry weight. It virtually does not contain trigelycerides but has plenty of membrane lipids. One of the functions of lipids in the brain is to determine the protein function and synaptic throughput in neurons. According to study, membrane lipids have a crucial role in major depression and anxiety. Other than membrane lipids, there are also other lipids that function as biomessenger like steriod hormones and eicosanoids. This experiment will determine the lipid composition of a brain sample. OBJECTIVES Distinguish the different types of lipids found in the brain Characterize brain lipids through different tests PRE-LAB ASSIGNMENT 1. Draw the general structure of phospholipids, sphingoglycolipids, and cholesterol. 2. Identify the positive indicators of the following tests: Ninhydrin test, Sudan III test, Ammnonium molybdate test and Salkowski test. WHAT TO BRING Calf or Pig brain 1ml Egg albumin 1 gel capsule Lecithin MATERIALS Filter paper Test tube rack Graduated cylinder Test tube holder Beaker Test tube brush Stirring rod Hot plate Test tubes 47 REAGENTS Distilled water Molisch reagent Dichloromethane Concentrated H2SO4 Methanol Ninhydrin solution Ether 6N HNO3 95% ethanol Ammonium molybdate Acetone Sudan III 5% glucose PROCEDURES A. EXTRACTION OF BRAIN LIPIDS. SHOULD BE DONE ONE DAY BEFORE THE THIS LABORATORY SESSION 1. Chop 100 g of fresh brain tissues and measure its volume. 2. Homogenize the brain tissue with dichloromethane-methanol (2:1) solvent 3. Place in Erlenmeyer flask and add ether enough to cover it. 4. Cover tightly (ether is highly volatile) and set aside for the next day laboratory session. 5. After a day, decant the incubated sample. RESIDUE I 1. Get a small portion of the incubated brain and add 10ml hot 95% ethanol (about 60 degrees) 2. Mix thoroughly and decant 3. Discard the residue and label supernatant as Supernatant II. Use this in Molisch Test. SUPERNATANT I a. Add acetone slowly until precipitation is complete. Complete precipitation happens when no cloudy formation will appear after adding a drop of acetone. b. Filter the mixture. And label residue and Residue II. 48 c. Divide the residue into four parts. Use this in Ninhydrin test, Ammonium molydbate Test, Sudan III Test and Salkowski Test. **If samples are too large, make sure to use only a small portion. B. QUALITATIVE TESTS 1. MOLISCH TEST 1. In two test tubes place 1ml each of the samples: 5% glucose and Supernatant II 2. Add to each tube, 3-5 drops of Molisch reagent and mix well. 3. To each test tube, add 1 ml concentrated sulfuric acid along the side of the walls of the inclined tube and do not mix to observe the change in color at the junction of the two liquids. Record your observation. 2. NINHYDRIN TEST 1. In two test tubes place 2.0 ml of samples: Residue II and egg albumin solution (1:10 ratio) 2. Add 10 drops of ninhydrin solution to 2.0ml of sample. Mix thoroughly. 3. Heat the test tubes in boiling water bath until a color change is observed. 4. Compare the results. 3. AMMONIUM MOLYBDATE TEST 1. In two test tubes place 2.0 ml of samples: Residue II and one drop of lecithin. 2. Add 1.0 ml of 6N nitric acid to the samples. 3. Heat the mixture in boiling water bath for 5 minutes. 4. Add 1.0 ml ammonium molybdate solution and heat again for 5 minutes. 5. Note the color changes and compare. 49 4. SUDAN III TEST 1. Place the last portion of residue II in a test tube. 2. Add dichloromethane drop by drop until all sample dissolves. 3. Add one drop of Sudan III reagent. 4. Red color will appear if fat is present. 5. SALKOWSKI TEST (Make sure all apparatus used here is free of water) 1. Dissolve the fourth portion of residue II in dichloromethane drop by drop. 2. Add equal amount of drops of concentrated sulfuric acid and shake gently. 3. Let liquid layers separate and observe color change at the interface. 50 DATA SHEET Name: ______________________________ Date: ________________ Yr. & Sec.: ______________________ Group No. ____ Rating: _______________ ANALYSIS OF BRAIN LIPIDS EXPERIMENT 5B TESTS OBSERVATIONS RESULTS A. MOLISCH TEST B. NINHYDRIN TEST C. AMMONIUM MOLYBDATE TEST D. SUDAN III TEST E. SALKOWSKI TEST 51 POST-LAB QUESTIONS 1. What types of lipids are found in your brain sample? How will you justify your answer? 2. Are the results in this experiment coincides with the expected outcome? Why? 3. State some possible errors encountered in the experiment. CONCLUSIONS 52 EXPERIMENT 6A GENERAL TEST FOR CARBOHYDRATES Of all the organic carbon on Earth, more than half of those are the carbohydrates starch and cellulose. Both are polymers of glucose. Animals and humans possess enzyme in the body that breaks down starch into glucose molecules. On the other hand, animals (except termites) and humans don’t have enzyme cellulase to break down cellulose. Carbohydrates’ building blocks are called monosaccharide or sugar. Each monosaccharide is joined by glycosodic bond. Monosaccharide is a polyhydroxy aldehyde (aldose) or a polyhydroxy ketone (ketose) with three or more carbons. They can be in their linear or cyclic form. The chemical properties of the carbohydrates depend on what types of monosaccharides are present in their polymeric chain. This experiment identifies the carbohydrates in the extracted liver sample. OBJECTIVES Extract carbohydrates from liver sample Perform and familiarize the tests for identification of carbohydrates Understand the principle behind each step of extraction PRE-LAB ASSIGNMENT 1. What is the classification of monosaccharides? Give one example of each. 2. Draw the Fischer and Haworth projections of glucose. 3. Determine the positive indicator of each Molisih test and Iodine Test. WHAT TO BRING Chicken liver MATERIALS Graduated cylinder Test tube holder Beaker Test tube brush Stirring rod Water bath Test tubes Hot plate Test tube rack Mortar and pestle 53 REAGENTS Distilled water Molisch reagent 0.1% acetic acid Conc. H2SO4 Ethanol Iodine 5% glucose PROCEDURES A. SAMPLE PREPARATION 1. Weigh 3 grams of chicken liver and place in a beaker. 2. Place 2 ml of boiling water while mixing it for 2 minutes to precipitate the proteins. 3. Transfer the mixture in a mortar and grind until no lump is visible. 4. Add to the mixture another 3ml of distilled water and transfer in a beaker. 5. To the beaker, add 1ml of 0.1% acetic acid. 6. Heat the mixture in a water bath for 30 minutes. 7. Filter immediately while still warm. 8. To the filtrate, add 5 to 10 drops of ethanol to further precipitation. Filter solution if cloudy. B. QUALITATIVE TESTS 1. MOLISCH TEST a. In three test tubes place 1ml each of the samples: 5% glucose, water, and prepared liver sample. b. Add to each tube, 3-5 drops of Molisch reagent and mix well. c. To each test tube, add 1 ml concentrated sulfuric acid along the side of the walls of the inclined tube and do not mix to observe the change in color at the junction of the two liquids. Record your observation. 54 2. IODINE TEST a. In three test tubes place 1ml each of the samples: 5% starch, water, and prepared liver sample. b. Add to each tube, 3-5 drops of Iodine and mix well. Record the color. c. Warm the test tubes in water bath until there is change in color. d. Immediately remove the test tubes and cool at room temperature. e. Record the color of your solutions. 55 DATA SHEET Name: ______________________________ Date: ________________ Yr. & Sec.: ______________________ Group No. ____ Rating: _______________ GENERAL TEST FOR CARBOHYDRATES EXPERIMENT 6A PROCEDURE RESULTS OBSERVATIONS A. PREPARATION B. MOLISCH TEST C. IODINE TEST 56 POST-LAB QUESTIONS 1. Explain how the carbohydrates are extracted from the liver. 2. Explain Molisch test. Give the chemical reaction of this test and explain the result. Is it positive or negative, why? 3. Explain Iodine test. Give the chemical reaction of this test and explain the result. Is it positive or negative, why? CONCLUSIONS 57 EXPERIMENT 6B QUALITATIVE TESTS FOR CARBOHYDRATES Carbohydrates can be classified into monosaccharide, the monomer unit of carbohydrates, disaccharide if two monosaccharides are joined, oligosaccharide if few monosaccharides are joined or polysaccharide if it is already compose of large number of monosaccharides. Several tests can be used to determine whether a carbohydrate is (a) a ketone monosaccharide (ketose) or an aldehyde monosaccharide (aldose), (b) a monosaccharide or a disaccharide, (c) a reducing disaccharide or a non-reducing disaccharide, or (d) if it is a polysaccharide or not. Glucose in the urine is normally present in a very small amount (about 0.010.03g/100ml urine). When the amount exceeds this level, glucosuria happens and can be an indication of diabetes. Diabetes is a disease wherein the level of blood glucose or blood sugar in humans is very high. This happens when human body does not make insulin (hormone that regulates the metabolism of carbohydrates), type I or does not make or use insulin well, type II. You will identify in this experiment reducing and nonreducing sugars in the samples through the tests presented. OBJECTIVES Perform the different tests for different types of carbohydrates Understand the principle behind each test and its purpose Qualitatively detect sugar content from a urine sample of a diabetic person PRE-LAB ASSIGNMENT 1. Look for the specific purpose of the different tests presented in the experiment and its positive indicator. 2. Search on the normal values and abnormal values of glucose in urine WHAT TO BRING Urine samples: Random urine (RU) – taken from any time of the day who did not fast Diabetic urine (DU) – taken any time of the day from diabetic person who did not fast 58 MATERIALS Graduated cylinder Test tube holder Beaker Test tube brush Stirring rod Water bath Test tubes Hot plate Test tube rack REAGENTS 5% glucose Benedict’s reagent 5% sucrose Barfoed’s reagent 5% fructose Bial’s orcinol reagent 5% lactose Seliwanoff’s reagent 5% xylose PROCEDURES A. BENEDICT’S TEST 1. Label 6 test tubes with the following samples: glucose, sucrose, fructose, lactose, RU, and DU. 2. Place in each test tubes 1 ml of Benedict’s reagent. 3. Add 1 ml each of the samples and mix thoroughly. 4. Warm the test tubes and remove immediately if color changes occur. 5. Record observations according to the pattern below. DATA COLOR OF SOLUTION INTERPRETATION (-) Blue Absent (+) Green, slight yellow ppt* Present, trace (++) Green, thick yellow ppt Present, about 1g/100mL (+++) Yellow, orange ppt Present, about 2g/100mL Orange, orange to red ppt Present, more than 2g (++++) *ppt = precipitate 59 B. BARFOED’S TEST 1. Label 4 test tubes with the following samples: glucose, sucrose, fructose, and lactose. 2. Place in each test tubes 1 ml of Barfoed’s reagent. 3. Add 1 ml each of the samples to the four labeled test tubes respective their names and mix thoroughly. 4. Heat for 30 seconds. Note the changes and record. C. BIAL’S ORCINOL TEST 1. Label 3 test tubes with the following samples: glucose, fructose, and xylose. 2. Place in each test tubes 1 ml of Bial’s orcinol reagent. 3. Add 1 ml each of glucose, sucrose, fructose, and lactose to the three labeled test tubes respective their names and mix thoroughly. 4. Boil gently for 5 minutes. 5. Look for green colored solution and red colored solution and record. D. SELIWANOFF’S TEST 1. Label 4 test tubes with the following samples: glucose, sucrose, fructose, and lactose. 2. Place in each test tubes 1 ml of Seliwanoff’s reagent. 3. Add 1 ml each of glucose, sucrose, fructose, and lactose to the four labeled test tubes respective their names and mix thoroughly. 4. Boil for 30 seconds. 5. Observe color changes and record. 60 DATA SHEET Name: ______________________________ Date: ________________ Yr. & Sec.: ______________________ Group No. ____ Rating: _______________ QUALITATIVE TESTS FOR CARBOHYDRATES EXPERIMENT 6B WRITE (+) for positive results and (-) for negative results. For Benedict’s test, follow instruction in the procedure. Write N/A if not applicable. SAMPLES’ RESULTS TESTS GLUCOSE FRUCTOSE SUCROSE LACTOSE XYLOSE RU DU A. BENEDICT’S B. BARFOED’S C. BIAL’S D. SELIWANOFF’S 61 POST-LAB QUESTIONS 1. Explain the results gathered from each test by presenting the principle behind it. What makes the test positive? Explain why some samples exhibit positive results and why some have negative results. 2. Compare the urine from a normal person and a diabetic person. If they are the same or not, lay down some explanations of the results. CONCLUSIONS 62 EXPERIMENT 7A URINALYSIS – NORMAL CONSTITUENTS Urine is one of the waste products of metabolism in the body. The presence or absence of a substance in the urine could be used as a diagnostic test for a disorder or disease. Complete urine analysis or urinalysis consists of three parts: physical properties, chemical properties and urine sediment findings. The average urine production in adult humans is around 1.4L per person, where 91-95% is water. The rest of the remaining percentages of urine content are the different chemical substances which are by-products of metabolism. In this experiment you are going to examine the inorganic constituents of urine. OBJECTIVES Analyze a urine sample Identify the inorganic constituents of urine sample through the tests Correlate the findings to clinical significance PRE-LAB ASSIGNMENT 1. What are the normal physical properties of urine? 2. What are the normal inorganic constituents of urine? What are its normal values? 3. Determine the positive indicator on each test involve. WHAT TO BRING URINE SAMPLES should be taken at most an hour before the analysis Random urine sample from a group mate Urine sample from a sick person MATERIALS pH paper Graduated cylinder Filter paper Beaker Evaporating dish Stirring rod 63 Test tubes Test tube brush Test tube rack Water bath Test tube holder Hot plate REAGENTS 2% K2C2O4 Dilute HCl 10% NH4OH 20% NaOH Dilute HNO3 10% NaOH 10% AgNO3 0.05% CuSO4 10% BaCl2 Sodium nitroprusside PROCEDURES A. COLOR AND pH 1. Place urine sample in a test tube and identify its color. 2. Place a pH paper strip to determine its pH. 3. Record observations. B. CATION ANALYSIS 1. Calcium. Place 3 ml sample in a test tube. To the sample, add 3 drops of 2% potassium oxalate solution. If precipitate will form, calcium is present. Set aside for the next procedure 2. Magnesium. Filter the mixture from the previous step. Test the filtrate for complete precipitation by adding dropwise potassium oxalate solution. If no more precipitate will form, filter the mixture. To the filtrate, add drop by drop 10% ammonium hydroxide until basic. Set aside and observe for precipitation. C. ANION ANALYSIS 1. Chlorides. Place 2 ml sample in a test tube. Add dropwise dilute nitric acid until acidic. Add 2-3 drops of silver nitrate and observe for the formation of white precipitate. 64 2. Sulfates. Place 2 ml sample in a test tube. Add dropwise dilute hydrochloric acid until acidic. Add 2-3 drops of 10% Barium Chloride and observe for the formation of white precipitate. 3. Phosphates. Place 5 ml sample in a test tube. Add dropwise dilute ammonium hydroxide until basic. Precipitate formation signifies presence of phosphate ions. D. ORGANIC COMPONENTS’ ANALYSIS 1. Urea. Evaporate in a water bath 10ml of urine until volume is reduced to one-third. Cool and add 2 ml of 20% sodium hydroxide. Mix well. To the mixture add 2-3 drops of 0.05% copper sulfate. 2. Creatinine. Nitroprusside Test. Place 2 ml of urine sample in a test tube. Add 2-3 drops of sodium nitroprusside. Add 3-5 drops of 10% sodium hydroxide to make it basic. Observe the results. 65 DATA SHEET Name: ______________________________ Date: ________________ Yr. & Sec.: ______________________ Group No. ____ Rating: _______________ URINALYSIS – NORMAL CONSTITUENTS EXPERIMENT 7A WRITE (+) for positive results and (-) for negative results. SAMPLES’ RESULTS TESTS NORMAL URINE SICK URINE COLOR pH Calcium Magnesium Chloride Sulfate Phosphate Urea Creatinine 66 POST-LAB QUESTIONS 1. What does color of urine implies? 2. How does temperature affect the volume of urine excretion? 3. How does diet affect the urine composition? 4. How does urine differ from a normal person to a sick person? CONCLUSIONS 67 EXPERIMENT 7B URINALYSIS – PATHOLOGICAL ANALYSIS There are several conditions where urine can have abnormal components. These are called abnormal characteristics since these substances shouldn’t be found in the urine sample of a healthy person. Conditions like proteinuria, oliguria, dysuria or glucosoria are only some of the examples. In order to understand these conditions, one should know the substances involve in these diseases. This experiment will let you analyze a urine sample and determine the substances present in that sample. After such, if there are abnormal substances present in that sample, you can roughly diagnose the condition of the body. OBJECTIVES Differentiate normal urine versus abnormal urine Identify the abnormal substances present in a given urine sample Correlate the findings to clinical significance PRE-LAB ASSIGNMENT 1. Identify all abnormal substances that may be present in urine. Name the conditions of such presence. 2. Identify the positive indicators on each test involve in this experiment. WHAT TO BRING URINE SAMPLES should be taken at most an hour before the analysis Random urine sample from a group mate Urine sample from a sick person MATERIALS Graduated cylinder Test tubes Beaker Test tube rack Stirring rod Test tube holder 68 Test tube brush Hot plate Water bath REAGENTS Dilute NaOH 10% NH4OH 6M NaOH 5% Sodium nitroprusside 0.05% CuSO4 Saturated benzidine solution Concentrated HNO3 Glacial acetic acid Benedict’s Reagent 3% H2O2 PROCEDURES TEST SAMPLES: In each analysis, prepare two test tubes with labels: Normal Urine (NU) and Abnormal Urine (AU) A. BIURET’S TEST 1. Place 1 ml each of the test samples in previously labeled test tubes. 2. Add to each test tube 10 drops of 6M sodium hydroxide and mix thoroughly. 3. Add 2 drops of 0.5% copper sulfate solution. Mix well and record your observation. B. HELLER’S RING TEST 1. Place 1.5ml of concentrated nitric acid each in previously labeled test tubes. 2. Slowly without disturbing, add the 2ml test sample on the inner wall of the test tube. 3. Observe for a formation of fluffy white ring at the junction of two liquids. C. BENEDICT’S TEST 1. Place 2 ml of Benedict’s solution each in previously labeled test tubes. 2. Add 1 ml each of the test samples in the tubes and mix thoroughly. 69 3. Boil in water bath for 2-3 minutes and set aside to cool. 4. Record observations according to the pattern below: DATA COLOR OF SOLUTION GLUCOSE AMOUNT (-) Blue < 0.1% or <100 mg/dL (+) Green, slight yellow ppt* 0.5% or 150 mg/dL (++) Green, thick yellow ppt 1.0% or 1,000 mg/dL (+++) Yellow, orange ppt 2.0% or 2,000 mg/dL Orange, orange to red ppt >2.0% or >2,000 mg/Dl (++++) D. LEGAL’S TEST 1. Place 1 ml each of the test samples in previously labeled test tubes. 2. Add dropwise dilute sodium hydroxide to make it slightly basic. 3. Add few drops of 5% sodium nitroprusside and equal drops of glacial acetic acid. 4. Observe color change. A ruby-red or violet-red color indicates acetone. If yellow color is observed, acetone is absent. E. TEST FOR BILE ACID AND SALTS 1. Place 1 ml each of concentrated nitric acid in previously labeled test tubes. 2. By means of a dropper, slowly add 3-ml of test sample in each tube without disturbing it. 3. Note the color of the rings (green nearest the urine, then blue, then violet, red, and reddish-yellow nearest the acid) if positive. F. TEST FOR BLOOD 1. Heat 2 ml of test sample to boiling. Cool then add equal amount of saturated benzidine solution in glacial acetic acid. 2. Add 1 ml of 3% hydrogen peroxide. 3. Presence of blue/green color produced in less than 10 minutes signifies blood in the sample. 70 DATA SHEET Name: ______________________________ Date: ________________ Yr. & Sec.: ______________________ Group No. ____ Rating: _______________ URINALYSIS – PATHOLOGICAL ANALYSIS EXPERIMENT 7B WRITE (+) for positive results and (-) for negative results. SAMPLES’ RESULTS TESTS NORMAL URINE SICK URINE BIURET HELLER BENEDICT LEGAL BILE SALTS AND ACIDS BLOOD 71 POST-LAB QUESTIONS 1. What substances are present in the two urine sample? 2. What are the differences of the two urine sample? 3. From the gathered results, what might be the condition of the two sample urine? CONCLUSIONS 72