in vitro pharmacology kinase assays Cerep’s panel of kinases has increased from 205 biochemical assays as of January,1, 2009 to 270 (including 16 cellular kinase assays) as of January 1, 2010 allowing to provide a wider coverage of all major families in the human kinome (Manning G. et al. (2002) Science, 298: 1912-1934). Cerep kinase assays Biochemical kinase assays Majority of our biochemical kinase assays use activated kinases. They are usually full length kinase or cytoplasmic domain of RTK. Assays are designed to be as close as possible to ATP and substrate Km. The technology used to measure substrate phosphorylation is TR-FRET (HTRF® or LANCE®). A few assays are cascade of activation. - Assays converted from HTRF® to LANCEUltra® technology A number of our kinase assays has been converted from HTRF® to LANCEUltra® technology. Both technologies are TR-FRET with the difference in europium labelling: europium cryptate for HTRF® and europium chelate for LANCEUltra®. Assays are converted following a standard procedure consisting of Time course experiment, Km determination and pharmacology characterization of the enzyme by inhibiting its activity with known inhibitors. IC50 values obtained for known inhibitors are compared to literature and to those obtained using HTRF® technology. If all values are in agreement with the previous ones, LANCE® technology is validated for the kinase of interest. This conversion allows us to standardize and automate our kinase assays providing shorter turnaround times for both profiling and screening experiments. NOTE: The converted assays are indicated . They supersede the assays previously listed in our catalog. cellular Kinase assays In order to complement our existing biochemical assay platform, we have implemented cellular kinase assays. These assays allow to confirm inhibitors activity in a relevant cellular background and profile their selectivity against multiple signaling pathways. - Cellular kinase phosphorylation assays Cellular kinase phosphorylation assays are developed using AlphaScreen® Surefire® assay kits. The assays are optimized for directly measuring kinase activation following treatment of cells with activators of signaling pathways. - Cellular tyrosine kinase receptor activity assays We have demonstrated that the impedance-based technology can be used to monitor the activity of the main tyrosine kinase receptor families. These label-free assays allow the identification of inhibitors targeting either the ligand binding domain or the kinase domain. These assays can be developed in virtually any cancer cell lines or primary cells. As an example, we have developed and validated the EGFR cellular assay in the following cancer cell lines: A431, HELA and MDA-MB-231. To expand our existing kinase services, we offer binding kinase assays to identify type II inhibitors on unphosphorylated kinases, to compare compounds activity on unphosphorylated and phophorylated kinases and to discriminate between ATP and non-ATP competitive inhibitors. In addition, we are now using ADP readout to develop kinase assays on intractable substrates (for which no antibody exist) which allows us to profile kinase activity on different natural substrates in order to identify substrate selective inhibitors. These assays are displayed as part of our custom research. For further information, please contact us at customresearch@cerep.com. protein-tyrosine kinases ❚ Family/assay protein-tyrosine kinases / RTK ALK Axl kinase c-kit kinase c-Met kinase c c-Met kinase (HGFR) DDR2 kinase EGFR kinase c EGFR kinase (Hela cells) c EGFR kinase (A431 cells) - impedance c EGFR kinase (A431 cells) - AlphaScreen c EGFR kinase (MDA-MB-231 cells) EphA1 kinase EphA2 kinase EphA3 kinase EphA4 kinase EphA5 kinase EphA6 kinase EphA7 kinase c cellular assay new assay sales@cerep.com ❚ www.cerep.com new protocol Ref. ➁ ➁ ➁ ➀ ➁ ➁ ➀ ➁ ➁ ➀ ➁ ➀ ➁ ➁ ➁ ➁ ➁ 2678 3062 3070 2867 G150 2783 2865 G160 G161 G151 G162 1873 3055 3066 1702 2640 3071 3058 Family/assay protein-tyrosine kinases / RTK (cont'd) EphA8 kinase EphB1 kinase EphB2 kinase EphB3 kinase EphB4 kinase FGFR1 kinase FGFR2 kinase FGFR3 kinase FGFR4 kinase c FGFR kinase FLT-1 kinase (VEGFR1) FLT-3 kinase FLT-4 kinase (VEGFR3) Fms/CSFR kinase HER2/ErbB2 kinase HER4/ErbB4 kinase IGF1R kinase c IGF1R kinase assay converted from HTRF® to LANCEUltra® Ref. ➀ ➀ ➀ ➀ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ 3072 3053 3054 2731 3059 2868 2893 2894 2895 G152 3068 2866 2896 3069 1598 1875 3061 G163 human ➀ ExpresS Diversity kinase profile ➁ Comprehensive kinase profile ASSAY LIST January 2010 kinase ASSAY LIST January 2010 protein-tyrosine kinases ❚ (cont'd) Family/assay protein-tyrosine kinases / RTK (cont'd) IRK (InsR) c IRK (InsRb) IRR kinase KDR kinase (VEGFR2) LTK Mer kinase MusK PDGFRa kinase PDGFRb kinase c PDGFR kinase Ret kinase Ron kinase Ros kinase TIE2 kinase TRKA TRKB TRKC Tyro3/Sky kinase c VEGFR kinase protein-tyrosine kinases / CTK Abl kinase Ack Arg kinase BLK BMX (Etk) kinase Brk BTK Ref. ➀ ➁ ➁ ➀ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➀ ➁ ➁ ➁ ➁ ➀ ➁ ➁ ➁ ➁ ➁ ➁ 2898 G153 3073 2864 2642 2643 2899 3064 2900 G154 1593 3067 1594 2736 2901 2902 3080 3081 G142 3056 3052 3057 1697 1587 3063 1589 Family/assay protein-tyrosine kinases / CTK (cont'd) CSK CTK FAK Fer kinase Fes kinase Fgr kinase FRK Fyn kinase HCK ITK JAK1 JAK2 JAK3 Lck kinase Lyn A kinase Lyn B kinase PYK2 Src kinase Srm kinase Syk TEC kinase Tnk1 TXK Tyk2 (JTK1) Yes kinase ZAP70 kinase Ref. ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➀ ➁ ➀ ➁ ➁ ➁ ➁ ➀ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ 1524 2638 3065 2641 1519 3060 2784 0212 1590 2733 2619 2869 2905 2906 0669 2201 3077 2907 2646 2780 2647 2785 2786 2621 1595 0705 protein-serine/threonine kinases ❚ Family/assay protein-serine/threonine kinases / CMGC CDC2/CDK1 (cycB) CDK2 (cycA) CDK3 (cycE1) CDK4 (cycD1) CDK5/p35 CDK6 (cycD3) CDK7/MAT1 (cycH) CDK8 (cycC) CDK9 (cycT1) CK2 (casein kinase 2) CLK1 CLK2 DYRK1a DYRK2 DYRK3 DYRK4 ERK 1 ERK (P42mapk) 2 c ERK1/2 ERK5 (MAPK7) GSK3a GSK3b c GSK3b HIPK2 HIPK3 HIPK4 JNK1 JNK2 JNK3 c JNK1/3 p38a kinase p38b2 kinase (SAPK2b2) p38g kinase p38d kinase PCTAIRE1 kinase 2 Ref. ➀ ➁ ➀ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➀ ➁ ➁ ➁ ➀ ➁ ➁ ➁ ➀ ➁ ➁ ➁ ➀ ➁ ➁ ➁ ➁ 2875 2908 2679 0796 2877 2909 2910 2911 2912 2913 2787 2019 2781 2788 1963 1962 2914 2878 G155 2680 2842 2879 G156 2915 1980 1981 2880 1470 2916 G157 2881 1960 1580 3116 2025 Family/assay protein-serine/threonine kinases / CaMK AMPKa BRSK1 CaMK1a CaMK1d CaMK2a CaMK2g CaMK4 CHK1 CHK2 DAPK1 DAPK2 DCAMKL1 DCAMKL2 DRAK1 MAPKAPK2 MAPKAPK3 MAPKAPK5 (PRAK) MARK1 MARK2 MARK3 MARK4 MELK MNK1 MNK2 NIM1 kinase (MGC42105) NuaK1 (ARK5) PASK PhKg1 PhKg2 Pim1 kinase Pim2 kinase PKD1 (PKCµ) PKD2 PKD3 SIK Ref. ➀ ➀ ➀ ➀ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➀ ➁ ➁ ➁ ➁ ➁ ➁ ➀ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➀ ➁ ➁ ➁ ➀ ➁ 1572 2738 2739 2922 3024 2740 1582 2917 2882 1717 1930 2613 2741 2930 1466 1721 2684 1723 1966 2789 1967 2742 2614 2918 2792 2743 2744 2745 2622 2919 2920 2204 1729 1982 2921 kinase ASSAY LIST January 2010 protein-serine/threonine kinases ❚ (cont'd) Family/assay protein-serine/threonine kinases / CaMK (cont'd) smMLCK (MYLK) ➁ STK33 ➁ TSSK1 ➁ TSSK2 (STK22B) protein-serine/threonine kinases / AGC Akt1/PKBa ➀ ➁ Akt2/PKBb ➁ Akt3/PKBg ➁ c Akt1/2 CRIK ➁ GRK2 (ADRBK1) ➁ GRK3/BARK2 (ADRBK2) ➁ GRK5 MRCKa ➁ MSK1 ➁ MSK2 ➁ NDR1 kinase ➁ p70S6K ➁ p70S6Kb ➁ PDK1 ➀ ➁ c PDK1 PKA ➀ ➁ PKCa ➁ PKCb1 ➁ PKCb2 ➀ ➁ PKCg ➁ PKCd ➁ PKCe PKCz ➁ PKCh ➁ PKCq ➁ PKCi PKG1a ➁ PKG1b ➁ PKG2 ➁ PKN1 ➁ PKN2 ➁ PRKX ➁ ROCK1 ➀ ➁ ROCK2 ➁ RSK1 ➁ RSK2 ➁ RSK3 ➁ SGK1 ➀ ➁ other kinases ❚ Family/assay other kinases AurA/Aur2 kinase AurB/Aur1 kinase AurC/Aur3 kinase BubR1 kinase CDC7/ASK IKKa IKKb IKKe (IKBKE) MOS kinase MYT1 kinase NEK1 NEK2 NEK4 NEK6 NEK7 PEK (EIF2AK3) PI3Kb c cellular assay new assay ➁ ➀ ➁ ➁ ➁ ➁ ➁ ➀ ➁ ➁ ➁ ➁ ➁ new protocol 2026 3039 2791 2015 2923 2924 2925 G164 2628 2200 2627 2020 2629 1724 1983 2758 2883 2747 2926 G158 2927 0348 2888 2750 0350 0614 2044 2045 2046 2120 2121 2469 1730 1928 2615 2746 2681 1710 2884 2616 2928 2682 2929 Ref. ➀ ➁ ➁ ➁ Ref. 2885 1841 1842 2632 2764 2937 2938 2587 2765 2521 1931 2939 2950 1933 2588 2589 2203 Family/assay protein-serine/threonine kinases / AGC (cont'd) SGK2 SGK3 ➁ protein-serine/threonine kinases / CK1 CK1a ➀ ➁ CK1e protein-serine/threonine kinases / STE ASK1 ➁ COT kinase (MAP3K8) ➁ GCK (MAP4K2) ➁ HGK (MAP4K4) ➀ ➁ MEK1 (MAP2K1) ➁ c MEK1 MEK5 (MAP2K5) ➁ MEKK3 (MAP3K3) ➁ MEKK4 (MAP3K4) ➁ MINK ➁ MKK4/JNK1 MKK4/JNK2 MKK6 ➀ ➁ MKK6/p38a (mutant active) MST1 kinase (STK4) ➁ MST2 kinase ➁ MST3 kinase ➁ MST4 kinase ➀ ➁ NIK ➁ PAK1 ➁ PAK2 ➀ ➁ PAK4 ➀ ➁ TAOK2 (TAO1) ➀ ➁ protein-serine/threonine kinases / tkl ALK4 ➁ BMPR1A kinase (ALK3) ➁ B-raf kinase ➁ DLK1 (MAP3K12) ➁ IRAK1 ➁ IRAK4 ➀ ➁ LIMK1 ➁ LRRK2 MLK1 ➁ MLK2 (MAP3K10) ➁ RAF-1 kinase ➁ RAF-1/MEK1 RIPK2 ➁ TAK1-TAB1 (MAP3K7) ➁ Family/assay other kinases (cont'd) PKR (EIF2AK2) PLK1 PLK2 PLK3 PLK4 TTK Wee1 kinase WNK2 WNK3 WNK4 assay converted from HTRF® to LANCEUltra® 1969 2790 1716 2630 2124 2003 2590 2021 0703 G159 2631 2760 2759 2113 1927 1953 2931 1679 2585 2761 2748 2024 2325 1934 2932 1935 2586 2115 2762 2016 2620 1968 2933 2934 3177 2935 2326 2936 1703 2763 3017 Ref. ➁ ➀ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ ➁ atypical kinases ❚ Family/assay atypical kinases mTOR kinase (FRAP1) Ref. 2522 2049 2766 2793 2749 2767 2940 2768 2114 2633 Ref. ➀ ➁ 2941 human ➀ ExpresS Diversity kinase profile ➁ Comprehensive kinase profile 3 kinase ASSAY LIST January 2010 ❚ testing conditions ❚ suggested testing © Cerep - January 2010 Primary screening at 1-10 µM in duplicate (2 wells), followed-up for IC50 determination (8 concentrations in duplicate (16 wells) when compound displays more than 50% inhibition of control value. ❚ sample size (including IC50 follow-up studies) Assuming a molecular weight ≤ 500 g/mol and a testing concentration of 10 µM in duplicate (including a possible retest). Screening Weight (pre-weighed) Screening + Follow up 1 Volume (100% DMSO) Weight (pre-weighed) Volume (100% DMSO) 25 µL @ 10 mM 35 µL @ 10 mM 50 µL @ 10 mM 65 µL @ 10 mM 75 µL @ 10 mM 100 µL @ 10 mM 150 µL @ 10 mM 225 µL @ 10 mM 300 µL @ 10 mM 350 µL @ 10 mM 400 µL @ 10 mM 500 µL @ 10 mM 600 µL @ 10 mM 1 mg 1 mg 1 mg 1 mg 1 mg 1.5 mg 2 mg 2.5 mg 3 mg 4 mg 4 mg 5 mg inquire Individual catalog assays 1 to 3 assays 4 to 5 assays 6 to 10 assays 11 to 15 assays 16 to 20 assays 21 to 40 assays 41 to 50 assays 51 to 70 assays 71 to 100 assays 101 to 135 assays 136 to 150 assays 151 to 200 assays 201 to 250 assays 1 1 mg 1 mg 1 mg 1 mg 1 mg 1 mg 1 mg 1.5 mg 2 mg 2 mg 2.5 mg 3 mg 3.5 mg 60 µL @ 10 mM 70 µL @ 10 mM 100 µL @ 10 mM 110 µL @ 10 mM 125 µL @ 10 mM 250 µL @ 10 mM 275 µL @ 10 mM 400 µL @ 10 mM 550 µL @ 10 mM 650 µL @ 10 mM 750 µL @ 10 mM 1000 µL @ 10 mM inquire Assuming ~10% of test in IC50. Usually, for 1 IC50: 30 µL @ 10 mM and + 25 µL @ 10 mM by additional IC50. ❚ requested compound information To reduce the registration time and ensure that all the appropriate information is available to start the study in a shortest possible timeframe, please use Cerep compound submission form 1 or MS Excel file 2, and provide the following compound information: Name (compound ID) / Batch # / Molecular weight 3 / Formula weight 4/ Stock concentration / Stock solvent / Quantity / Unit 5 / Form / Storage conditions / Solubility, as well as Plate ID / plate position for compounds delivered in plates, Comments 6, and Quotation number. NOTE: Impurity and colored compounds might affect the results (compound color information is mentioned in the study report). Cerep compound submission form will be emailed to you with your quotation. A copy can be requested from sales@cerep. com, or downloaded from Cerep website: www.cerep.com/ Catalog Online 2 Systematically required for studies of 10 compounds or more. 3 Molecular weight (MW) of free acid or base form. 4 Formula weight (FW) including salt form and/or hydrate form if applicable. 5 mg?, mL? 6 e.g. useful information such as sensitivity to light, stability or hygroscopicity issues. 1 General remarks: - If compound(s) are supplied as a stock solution in plate(s) (preferred format for any submission of 10 or more compounds), please leave columns 1 and 12 empty in a 96W plate. The 384W plate format is also acceptable with columns 1, 2, 23 and 24 empty. For any other plate format, please inquire. - If compound(s) are not soluble in 100% DMSO, please provide any useful information concerning the solubility of the compound. The following solvents are compatible with most of our assays: DMSO (Cerep standard), H2O, Methanol, Tris/HCl 10 mM pH 7.4. - Organic solvents such as acetone, chloroform, ether, acetonitrile, tetrahydrofuran and trifluoroacetic acid are not recommended as they will significantly affect the results from many in vitro assays, even at very low concentrations. Warning: Cerep will apply the standard solubilization process when compounds are received at the testing site, unless special instructions are provided with the compounds. Customized handling procedure of compounds can be accommodated, please inquire for pricing conditions. ❚ protocol A typical protocol includes a minimum of 6-control wells (background, and maximal signal with and without vehicle) of the relevant reference compound. The reference compound for each assay is listed in each assay description. The historical average IC50 value is also shown in each assay description. Any of our assay protocols can be customized: Please inquire ❚ deliverables Percent inhibition (mean of replicates), individual values as percent of control, IC50 value (calculated from a minimum 5 concentration testing), Hill coefficient (nH), and plotted IC50 curves. ❚ data turnaround Complete data set is typically available within 3 weeks, after receipt of the compounds at the testing site (providing that we receive all available information to initiate the study). Secure, password-protected data can be viewed on line as soon as they are produced, after scientific approval and QC-ed by an experienced technician. FRANCE Le Bois l’Evêque 86600 CELLE L’EVESCAULT tel. +33 (0)5 49 89 30 00 (Headquarters) 155 boulevard Haussmann 75008 PARIS tel. +33 (0)1 45 64 44 60 USA 15318 N.E. 95th Street Redmond, WA 98052 tel. +1 (425) 895 8666 japan Namiki Shoji Co., Ltd. Kenseishinjuku Bldg. 5-5-3 Shinjuku, Shinjuku-ku TOKYO, 160-0022 tel. +81 (0)3 3354 4026 fax +81 (0)3 3352 2196 CHINA Ai Di Sheng (Edison) Road 326, 302-1 room Zhangjiang Hich-Tech Park Shanghai tel. +86 18702160370 sales@cerep.com www.cerep.com