SUPPLEMENTAL INFORMATION Supplemental Table 1: Sweet and sour cherry selections used in this study, their SI or SC phenotypes, S-haplotypes, and the S-genotypes of all possible gametes. Selection (abbreviation) Sweet Cherry Chelan Emperor Francis (EF) Gold Schmidt SI or SC S-haplotype a b Possible Gamete S-Genotypes SI SI SI SI S3S9 S3S4 S3S6 S2S4 S3, S9 S3, S4 S3, S6 S2, S4 Sour Cherry Homologous Pairing b S6m2S26, S6m2Sa, S9S26, S9Sa Non-homologous Pairing b S6m2S9, S26Sa Cigány SC S6m2S9 / S26Sa c Érdi Bőtermő (EB) SC S4S6m / SaSnull d S4Sa, S4Snull, S6mSa, S6mSnull S4S6m, SaSnull Montmorency (Mont) SC S6S13' / SaSnull d e S6Sa, S6Snull, S13' Sa, S13' Snull S6S13', SaSnull R. Schattenmorelle (RS) SC S6S13' / S26Sa c e S6S26, S6Sa, S13' S26, S13' Sa S6S13', S26Sa Surefire (Sure) SC S4S13' / SaSnull d e S4Sa, S4Snull, S13' Sa, S13' Snull S4S13', SaSnull Újfehértói fürtös (UF) SC S1' S4 / SdSnull § S1' Sd, S1' Snull, S4Sd, S4Snull S1' S4, SdSnull a S-genotypes of the sweet and sour cherry cultivars used in this study have been previously reported (Yamane et al. 2001; Iezzoni et al. 2005). b Sour cherry is an allotetraploid that typically undergoes disomic inheritance characterized by pairing and separation of homologous chromosomes during Meiosis I (Beaver and Iezzoni 1993). However, occasionally multivalent formation occurs whereby homeologous 1 chromosomes pair resulting in the production of gametes that contain two copies of homologous chromosomes (Beaver and Iezzoni 1993). Homologous chromosomes for each sour cherry selection were determined based upon segregation of S-haplotypes in this study. c S26 was previously named Sb (Yamane et al. 2001). d Only three different S-haplotypes could be identified for certain sour cherry cultivars. Segregation data presented in this study indicates that each S-haplotype was present in a single copy. The fourth S-haplotype is hypothesized to be Snull, containing a deletion of the S-locus. e S13' was previously named Sc (Yamane et al. 2001). The DNA sequences of the S13-RNase from sweet cherry (GenBank accession number: AJ635276) and Sc-RNase from sour cherry (Hauck et al. 2002) are identical. 2 Supplemental Figure 1: Punnett square indicating the number of progeny that resulted from each gamete combination, including the heteroallelic pollen S6S26 (shaded), from the cross between ‘UF’ (S1' S4 Sd Snull) and ‘RS’ (S6 S13' S26 Sa). UF a S4 Snull S1' Snull S1' Sd S4 Sd Sd Snull S1' S4 S13' Sa 3 4 2 3 0 1 S13' S26 3 4 2 1 1 0 S6 S26 5 2 0 2 2 0 S6 Sa 3 1 4 0 1 1 RS S6 S13' 3 3 1 0 0 1 S26 Sa 0 0 1 0 0 1 S6S6 and S26S26 gametes would result from double reduction during meiosis. 3 S6 S6 a 0 0 1 2 0 0 S26 S26 a 0 0 0 1 0 0 Supplemental Table 3: The S-genotypes, SI or SC predictions based on the S-genotype, and the SI or SC phenotypes of 92 sour cherry selections used to test the validity of the oneallele-match hypothesis for the genetic control of SI and SC in sour cherry. Progeny S-genotype a S4S13' S26Sa S4S13' SaSx b S4S6S13' Sa S4S6S26Sa S4S6S26Snull S1' S13' SaSd S1' S13' SaSnull S13'SaSdSnull S4S13' SaSnull S1’S4S13' Sa S4S13' SaSd S1' S13' SaSnull S1' S4S13' Sa S1' S13'SaSd S1' S6 S13' Snull S1' S13' S26Sd S4S6S26Snull S4S6S26Sd S13' SaSdSnull S1' S13' SdSnull S1' S4 S6Sa S4S6S13' Snull S4S6SaSd a Parents RS x EB RS x EB RS x EB RS x EB RS x EB UF x Sure UF x Sure UF x Sure UF x Sure UF x Sure UF x Sure UF x RS UF x RS UF x RS UF x RS UF x RS UF x RS UF x RS UF x Mont UF x Mont UF x Mont UF x Mont UF x Mont No. of Individuals 4 17 8 8 5 8 4 2 10 3 2 4 1 1 2 1 2 2 1 2 1 1 3 SI/SC Prediction SC SC SC SI SI SC SC SC SC SC SC SC SC SC SC SC SI SI SC SC SC SC SI c SI/SC Phenotype SC SC SC SI SI SC SC SC SC SC SC SC SC SC SC SC SI SI SC SC SC SC SI S-genotype was determined by S-RNase genotyping described in the text. The SFB genotype was confirmed for those progeny containing at least 2 functional S-haplotypes (indicated by bold). For all cases, the S-RNase and SFB genotypes were identical. b For those progeny for which fewer than four different S-haplotypes could be identified, Sx is used to designate the other S-haplotype(s). Sx may either represent the Snull-haplotype or the double dosage of one of the S-haplotypes. 4 c We hypothesize that Sa and Sd have complementary mutations, resulting in a functional Shaplotype. If Sa encodes a functional S-RNase and Sd encodes a functional SFB, then these progeny would be predicted to be SI. 5