Publications for Francesca Di Giallonardo
Publications for Francesca Di
Giallonardo
2016
Duchene, S., Duchene, D., Di Giallonardo, F.,
Eden, J., Geoghegan, J., Holt, K., Ho, S.,
Holmes, E. (2016). Cross-validation to select
Bayesian hierarchical models in phylogenetics.
BMC Evolutionary Biology, 16(1), 1-8. <a
href="http://dx.doi.org/10.1186/s12862-016-068
8-y">[More Information]</a>
Di Giallonardo, F., Geoghegan, J., Docherty, D.,
McLean, R., Zody, M., Qu, J., Yang, X., Birren,
B., Malboeuf, C., Newman, R., Holmes, E., et al
(2016). Fluid spatial dynamics of West Nile virus
in the USA: rapid spread in a permissive host
environment. Journal of Virology, 90(2),
862-872. <a
href="http://dx.doi.org/10.1128/JVI.02305-15">[
More Information]</a>
Kok, Y., Vongrad, V., Shilaih, M., Di
Giallonardo, F., Kuster, H., Kouyos, R.,
Gunthard, H., Metzner, K. (2016).
Monocyte-derived macrophages exhibit distinct
and more restricted HIV-1 integration site
repertoire than CD4 + T cells. Scientific Reports,
6, 1-11. <a
href="http://dx.doi.org/10.1038/srep24157">[Mo
re Information]</a>
Duchene, S., Di Giallonardo, F., Holmes, E.
(2016). Substitution Model Adequacy and
Assessing the Reliability of Estimates of Virus
Evolutionary Rates and Time Scales. Molecular
Biology and Evolution, 33(1), 255-267. <a
href="http://dx.doi.org/10.1093/molbev/msv207"
>[More Information]</a>
Geoghegan, J., Senior, A., Di Giallonardo, F.,
Holmes, E. (2016). Virological factors that
increase the transmissibility of
emerging human viruses. Proceedings of the
National Academy of Sciences of the United
States of America (PNAS), 113(15), 4170-4175.
<a
href="http://dx.doi.org/10.1073/pnas.152158211
3/-/DCSupplemental">[More Information]</a>
2015
Di Giallonardo, F., Holmes, E. (2015). Exploring
host-pathogen interactions through biological
control. PLoS Pathogens, 11(6), 1-5. <a
href="http://dx.doi.org/10.1371/journal.ppat.100
4865">[More Information]</a>
Di Giallonardo, F., Holmes, E. (2015). Viral
biocontrol: grand experiments in disease
emergence and evolution. Trends in
Microbiology, 23(2), 83-90. <a
href="http://dx.doi.org/10.1016/j.tim.2014.10.00
4">[More Information]</a>
2013
Di Giallonardo, F., Zagordi, O., Duport, Y.,
Leemann, C., Joos, B., Kunzli-Gontarczyk, M.,
Bruggmann, R., Beerenwinkel, N., Gunthard, H.,
Metzner, K. (2013). Next-Generation
Sequencing of HIV-1 RNA Genomes:
Determination of Error Rates and Minimizing
Artificial Recombination. PloS One, 8(9), 1-11.
<a
href="http://dx.doi.org/10.1371/journal.pone.007
4249">[More Information]</a>
2012
Althaus, C., Vongrad, V., Niederost, B., Joos, B.,
Di Giallonardo, F., Rieder, P., Pavlovic, J.,
Trkola, A., Gunthard, H., Metzner, K., et al
(2012). Tailored enrichment strategy detects low
abundant small noncoding RNAs in HIV-1
infected cells. Retrovirology, 9, 1-13. <a
href="http://dx.doi.org/10.1186/1742-4690-9-27"
>[More Information]</a>
2011
Huelsmann, P., Hofmann, A., Knoepfel, S.,
Popp, J., Raunch, P., Di Giallonardo, F., Danke,
C., Gueckel, E., Schambach, A., Wolff, H., et al
(2011). A suicide gene approach using the
human pro-apoptotic protein tBid inhibits HIV-1
replication. BMC Biotechnology, 11, 1-11. <a
href="http://dx.doi.org/10.1186/1472-6750-11-4"
>[More Information]</a>
Knoepfel, S., Di Giallonardo, F., Daumer, M.,
Thielen, A., Metzner, K. (2011). In-depth
analysis of G-to-A hypermutation rate in HIV-1
env DNA induced by endogenous APOBEC3
proteins using massively parallel sequencing.
Journal of Virological Methods, 171, 329-338.
<a
href="http://dx.doi.org/10.1016/j.jviromet.2010.1
1.016">[More Information]</a>
Metzner, K., Leemann, C., Di Giallonardo, F.,
Grube, C., Scherrer, A., Braun, D., Kuster, H.,
Weber, R., Guenthard, H. (2011). Reappearance
of Minority K103N HIV-1 Variants after
Interruption of ART Initiated during Primary
HIV-1 Infection. PloS One, 6(7), 1-6. <a
href="http://dx.doi.org/10.1371/journal.pone.002
1734">[More Information]</a>