CD8[superscript +] T Cells from Mice Transnuclear for a TCR that Recognizes a Single H-2K[superscript b]Restricted MHV68 Epitope Derived from gB-ORF8 Help The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation Sehrawat, Sharvan, Oktay Kirak, Paul-Albert Koenig, Marisa K. Isaacson, Sofia Marques, Gunes Bozkurt, J. Pedro Simas, Rudolph Jaenisch, and Hidde L. Ploegh. “CD8+ T Cells from Mice Transnuclear for a TCR That Recognizes a Single H-2KbRestricted MHV68 Epitope Derived from gB-ORF8 Help Control Infection.” Cell Reports 1, no. 5 (May 2012): 461–471. As Published http://dx.doi.org/10.1016/j.celrep.2012.03.009 Publisher Elsevier Version Final published version Accessed Fri May 27 00:04:56 EDT 2016 Citable Link http://hdl.handle.net/1721.1/91544 Terms of Use Creative Commons Attribution Detailed Terms http://creativecommons.org/licenses/by-nc-nd/3.0/ Cell Reports Report CD8+ T Cells from Mice Transnuclear for a TCR that Recognizes a Single H-2Kb-Restricted MHV68 Epitope Derived from gB-ORF8 Help Control Infection Sharvan Sehrawat,1,5 Oktay Kirak,4,5 Paul-Albert Koenig,1 Marisa K. Isaacson,1 Sofia Marques,2,3 Gunes Bozkurt,1 J. Pedro Simas,2,3 Rudolph Jaenisch,1 and Hidde L. Ploegh1,* 1Whitehead Institute for Biomedical Research, Massachusetts Institute of Technology, 9 Cambridge Center, Cambridge, MA 02142, USA de Microbiologia e Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, 1649-028 Lisboa, Portugal 3Instituto Gulbenkian de Ciência, Rua da Quinta Grande 6, 2780-156 Oeiras, Portugal 4Department of Immunology and Microbial Science, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA 5These authors contributed equally to this work *Correspondence: ploegh@wi.mit.edu DOI 10.1016/j.celrep.2012.03.009 2Instituto SUMMARY To study the CD8+ T cell response against a mouse gherpes virus, we generated Kb-MHV-68-ORF8604–612 RAG/ CD8+ T cell receptor transnuclear (TN) mice as a source of virus-specific CD8+ T cells. Kb-ORF8Tet+ CD8+ T cells, expanded in the course of a resolving MHV-68 infection, served as a source of nucleus donors. Various in vivo and ex vivo assay criteria demonstrated the fine specificity and functionality of TN cells. TN cells proliferated extensively in response to viral infection, helped control viral burden, and exhibited a phenotype similar to that of endogenous Kb-ORF8-Tet+ cells. When compared to OT-1 cells, TN cells displayed distinct properties in response to lymphopenia and cognate antigen stimulation, which may be attributable to the affinity of the TCR expressed by the TN cells. The availability of MHV-68-specific CD8+ TCR TN mice provides a new tool for investigating aspects of host-pathogen interactions unique to g-herpes viruses. INTRODUCTION g-herpes viruses (g-HVs) are species-specific lymphotropic viruses associated with cellular transformation and malignancies, especially in immunocompromised hosts (Barton et al., 2011). Their restricted host range and the paucity of virus strains that can infect laboratory animals have hampered studies of their pathogenesis and of host correlates of protection. Consequently, potential vaccine strategies have suffered as well (Belz et al., 2000; Woodland et al., 2001). Infection of laboratory mice with murine herpes virus 68 (MHV-68) serves as an animal model for investigating the pathogenesis and immunity induced by human g-HVs such as Epstein-Barr virus (EBV) and human herpes virus 8 (HHV-8) (Long et al., 2011). These events resemble those elicited by human g-HVs (Flaño et al., 2002; Nash and Sunil-Chandra, 1994; Simas and Efstathiou, 1998; Wu et al., 2010). Considerable efforts have been expended to identify anti-MHV-68 CD8+ T cell epitopes, to explore the timing of their recognition, and to examine various parameters related to the quality as well as magnitude of the virus-specific T cell responses (Freeman et al., 2010; Fuse et al., 2007; GredmarkRuss et al., 2008; Liu et al., 1999a, 1999b; Molloy et al., 2011; Obar et al., 2004a, 2004b; Virgin et al., 1997), but there are no T cell receptor (TCR) transgenic mice that can serve as a source of naive MHV-68-specific CD8+ T cells. Such animals would allow us to more precisely address questions on the requirements for induction and maintenance of g-HV-specific effector and memory CD8+ T cell responses. MHV-68 open reading frame 8 (ORF8), glycoprotein B (gB), induces an intermediate level of CD8+ T cell response (Gredmark-Russ et al., 2008). To measure magnitude and quality of MHV-68-specific CD8+ T cell responses, we used somatic cell nuclear transfer (SCNT) to generate ORF8-specific transnuclear (TN) CD8+ T cells. The donor nucleus was isolated from KbORF8-tetramer (Tet)+ cells, expanded in the course of resolution of the infection. Using an adoptive transfer approach and a variety of assay criteria, we demonstrate that TN cells on a RAG1/ background respond well to both antigenic stimulation and lymphopenia, and curtailed viral growth when adoptively transferred into mice prior to infection. The TN cells exhibited a phenotype similar to that of endogenous Kb-ORF8-Tet+ cells in the acute phase of infection, and a subset of initially expanded TN cells generated memory. When compared head-to-head, ORF8-specific TN cells proliferated more rapidly than transgenic OT-1 cells that are restricted by the same MHC element. ORF8 TN mice most closely approximate a component of the normal CD8+ T cell response against MHV-68 and are thus a useful tool for exploring the unique features of host defense against g-HVs. RESULTS Generation of ORF8 TN Mice and Identification of TCR in ORF8 TN Cells The generation of TN mice specific for the ORF8 epitope (KNYIFEEKL) was done essentially as described by Kirak et al. (2010), using the corresponding tetramers to isolate Cell Reports 1, 461–471, May 31, 2012 ª2012 The Authors 461 A B Sort Kb-ORF8- Tet + cells MH V-68 infection of (BALB/ c x C57BL/6) F1 mice Transfer nucleus into enucleated oocyte Identify TCR and characterize cells V gene/allele ESC derivation Birth of chimeric mice Breeding with Rag1-/-C57BL/6 mice TCR alpha TCR beta TRAV10N*01 TRBV31*01 D gene/allele --- J gene/allele TRAJ33*01 TRBJ2 -2*01 C gene/ allele TRAC ( n.d.) TRBC2*03 Peptide recognized ESC injection of Blastocyst TRBD1*01 KNYIFEEKL E C 0.0662 1.72 Pooled LN and Spleen CD8 CD3 0.87 10.6 12.5 ORF8 TN 68.4 29.8 71.6 3.77 CD4 B220 Thymus 5.23 Kb-ORF8-tet 10.2 85.2 24.8 27.4 1.37 0.99 16.9 30.9 15.9 81.8 0.538 CD4 0.0358 0.722 CD8 CD8 6.38 H-2Kb 93 V 14 G K NY I F E E K L F 10 6 4 4 3 2 1 0 KNYIFEEKL ANYIFEEKL KAYIFEEKL KNAIFEEKL KNYAFEEKL KNYIAEEKL KNYIFAEKL KNYIFEAKL KNYIFEEAL KNYIFEEKA KNYVFEEKL KQYIFEEKL KNFIFEEKL KNYLFEEKL KNYIFDEKL KNYIFEDKL KNYIFEERL 4 3 2 1 0 EC50 IFN-g (Fold change) 10000 8000 6000 4000 2000 8 EC50 H-2Kb (Fold change) 400 IFN- + H-2Kb IL-2 conc. (pg/ml) 46.1 300 200 100 0 KNYIFEEKL ANYIFEEKL KAYIFEEKL KNAIFEEKL KNYAFEEKL KNYIAEEKL KNYIFAEKL KNYIFEAKL KNYIFEEAL KNYIFEEKA KNYVFEEKL KQYIFEEKL KNYIFDEKL KNYIFEDKL KNYIFEERL 52.2 H-2Kd Kb-ORF8-tet 0.919 OT1Tg D APL APL Figure 1. Generation of Kb-MHV-68-ORF8 TCR TN Mice and Defining the Fine Specificity of TCR (A) Schematic for the generation of Kb-MHV-68-ORF8 CD8+ TCR TN mouse lines. (B) The gene and allele usage by a and b chains of TCR of MHV-68-ORF8 CD8+ TN T cells is tabulated. (C and D) Peripheral blood samples collected from Kb-MHV-68-ORF8 CD8+ TCR TN RAG/ mice were analyzed flow cytometrically using the indicated panel of surface markers. FACS plots for gated lymphocyte populations are shown. The results indicate profound skewing toward CD8+ T cell subset and their homogeneous staining with Kb-ORF8 tetramer, H-2Kb, and Vb14 TCR. 462 Cell Reports 1, 461–471, May 31, 2012 ª2012 The Authors ORF8-specific CD8+ T cells from MHV-68-infected (Balb/c 3 C57B6) F1 mice at 20 days postinfection (Figure 1A). F1 mice were used for infection and isolation of Tet+ cells because CD8+ T cells from such F1 mice are an efficient source of donor nuclei to generate embryonic stem cells (ESCs) (Kirak et al., 2010). We obtained ESCs from blastocysts and used them to generate chimeric mice. Chimeric mice not exposed to MHV68 were then tested for the presence of Kb-ORF8-Tet+ cells as an indicator for cells bearing the functionally rearranged TCR a and b pair. In naive chimeric mice, around 3% of their total CD8+ T cells were Kb-ORF8-Tet+, as compared to WT C57BL/6, which showed less than 0.02% (naive), and 2.0% of KbORF8-Tet+CD8+ T cells after 21 days of MHV-68 infection. We ascertained germline transmission by backcrossing the chimeric mice to C57BL/6 and checking for agouti coat color of the offspring. The presence of the recombined TCR a and b in each of the offspring was analyzed by flow cytometry using Kb-MHV68-ORF8 tetramers. Because TCR a and TCR b segregate independently, 25% of the offspring should inherit both of the rearranged TCR alleles. By screening offspring from the chimera, backcrossed onto the C57BL/6 background for multiple generations, we identified several animals with large numbers of Kb-ORF8-Tet+ CD8+ T cell populations in peripheral blood and lymphoid organs in the absence of virus infection, thus establishing germline transmission of the TCR a and TCR b pair (Figures S1A and S1B). The identity of a and b chains of the TN TCR was established by 50 rapid amplification of cDNA ends (50 RACE)-PCR, cloning, and DNA sequence analysis. The gene segments used and the genomic organization for the rearranged V and J regions (a chain) and V, D, and J regions (b chain) are shown in Figures 1B and S1C. The a chain uses TRAV10N*01, TRAJ33*01, and the b chain uses TRBV31*01, D1*01, and TRBJ2-2*01 (Figure 1B). The mechanism underlying recombination for the b chain is therefore by inversional joining, as depicted in Figure S1C. The nucleotide and predicted amino acid sequence for the complementaritydetermining regions (CDRs) 3 for a and b chains, as well as the complete sequence for recombined segments of the ORF8 TN cell TCR, are shown in Figure S1D. Phenotypic Characterization of Kb-ORF8 TN RAG/ Mice Mice positive for the rearranged ORF8-specific TCR were crossed to obtain ORF8 TN RAG/ mice. Mice that inherited both the rearranged a and b genes on a RAG/ background had exclusively ORF8-specific CD8+ T cells, with only a small population of CD4+ T cells remaining (Figure 1C, middle panel). All ORF8-specific (Tet+) CD8+ T cells expressed Vb14 /TRBV31 (Figures 1C and 1D). We compared the cellular distribution in the thymus and peripheral lymphoid organs of ORF8 TN and OT-1 transgenic mice (Figure 1E). OT-1 Tg RAG/ mice showed 25% single-positive (SP) CD4+, 30% SP CD8+, 30% double-positive (DP) CD4+CD8+ lymphocytes, whereas ORF8 TN RAG/ mice showed 5% SP CD4+, 12% SP CD8+, 70% DP CD4+CD8+ lymphocyte population (Figure 1D). Thus, ORF8 TN RAG/ mice exhibited a thymic cellular distribution pattern distinct from that of OT-1 Tg RAG/ mice but similar to that of WT mice (Figure S2A). This result might reflect a different lymphoid developmental history imposed by transgenesis, possibly because of transgene copy number and site of transgene integration. In the peripheral lymphoid organs of OT-1 Tg RAG/ as well as ORF8 TN RAG/ mice, the majority of lymphocytes were CD8+ T cells (Figure 1E). In peripheral lymphoid organs, CD4+CD8 cells were about 1%–2% in OT-1 RAG/ mice and 2%–4% in ORF8 TN RAG/ mice. All of the CD4+ in cells in ORF8 TN RAG/ mice were Vb14 and KbORF8-Tet+ (Figure S2B), albeit at lower staining intensity, consistent with a contribution of class I MHC-CD8 interactions in determining the strength of tetramer staining. Identification of the Anchor Residues of the ORF8 Peptide for MHC Class I and TCR Binding We modeled how the ORF8 peptide (KNYIFEEKL) binds to H-2Kb, in comparison with two other H-2Kb restricted epitopes (Figure S2C) (Mareeva et al., 2008). In order to identify the anchor and contact residues of the ORF8 epitope (KNYIFEEKL) for H-2Kb and the TCR, respectively, we examined a series of peptide variants (altered peptide ligands [APLs]). These APLs were tested for their ability to stabilize H-2Kb expression on the surface of TAP-deficient RMA/S cells at 37 C as an indicator of their binding to H-2Kb (Figure 1F). The class I MHC anchor residues were phenylalanine at position 5 (F5), leucine at position 9 (L9), and tyrosine at position 3 (Y3) in decreasing order of strength. To assess the stimulatory ability of ORF8 APLs, TN cells activated in vivo by MHV-68 infection were stimulated with APLs ex vivo, and an intracellular cytokine staining (ICCS) assay was used to measure IFN-g producing cells. Residues important for TCR engagement in this setting included both MHC anchor residues and TCR contact residues. Accordingly, we identified Y3, F5, aspartic acid at position 6 (E6), isoleucine at position 4 (I4), and L9. Positions 5 and 9 are major MHC anchor residues and account for their involvement in stimulating TN cells. The main TCR contacts are I4 and glutamic acid at position 6 and/or 7 (E6/E7). That I4 and E6/E7 likely contact the TCR was confirmed by measuring the levels of IL-2 in culture supernatants produced by TN cells stimulated either with index peptide or (E) A comparison of distribution of CD4+ and CD8+ T cells in the thymus (left panel) and pooled lymphoid organs (right panel) of Kb-MHV-68-ORF8 TCR TN RAG/ mice and Kb-Ova TCR Tg (OT-1) RAG/ mice is shown. (F) Upper panel is a representation depicting the involvement of various amino acid residues of KNYIFEEKL peptide in binding to H-2Kb molecule (red) and TCR (green) as determined by class I stabilization on RMA/S cells and ability to induce IFN-g production by activated TN cells. The font size represents the influence on strength of binding. Lower panel represents H-2Kb stabilizing ability on the surface of RMA/S cell (red bars) and ORF8 TN CD8+ T cell stimulatory capacity (green bars) of ORF8 (APLs), shown by fold change in the EC50 of the respective APL as compared to the index peptide, KNYIFEEKL. (G) The levels of IL-2 in the culture supernatant of in vivo-activated ORF8 TCR TN CD8+ T cells and BMDCs pulsed with index peptide and APLs after 3 days of coculture are shown. All experiments were repeated three to four times. The results are represented as mean ± SEM. See also Figure S1. Cell Reports 1, 461–471, May 31, 2012 ª2012 The Authors 463 1 + CD45.2 TN cells into naive CD45.1 B6 mice (4-35) Analysis MHV-68 infection (1x10 6pfu ip) B C 00 00 0 00 00 Unstimulated 1.09 0.52 75.5 22.9 + 50,000 CD45.2 ORF8 TN cells transferred 60 40 KNYIFEEKL 20 0 0 10 21 50 0 0 00 73.6 15.1 10 10 17.2 20 00 71.7 CD8 30 50 CFSE 40 0 0.047 00 99.5 11 15 CD45.2 0.097 50 15 50,000 CD45.2 ORF8 TN cells transferred 0 + + % CD45.2 of total CD8 cells 5.5dpi 50 Input cells E D IFN-γ 0 + + % CD45.2 of total CD8 cells Days A no of transferred CD45.2+ TN cells days post infection 1.01 8.31 83.2 7.43 CD45.2 CD44 G 99.1 0 1.48 12.8 98.8 0 87.2 52.2 77.2 1.26 15.1 CD8 CD8 0 6.27 98.6 70.3 0.909 CD45.2 + Kb-ORF8-Tet gate 99.2 0.0959 6.1 7.54e-3 27.5 Donor cells CD45.2 1.18 0 Kb-ORF8-Tet Kb-ORF8-Tet 0.905 0 0 MHV-68 (WT) MHV-68 (A9) Uninfected 0 Kb-ORF8-Tet F 97.4 Host cells 0.0226 2.62 CD8 92.4 0.213 98.5 79.8 19.2 1.33 6.46e-3 1.24 0.674 0.353 CFSE Host cells 0.666 0.0113 0.149 PD1 Control + H 1.35 79.6 CD8 18.9 9 0 96.7 0 CD8 3.28 8 I CD127 0.0903 Kb-ORF8-Tet CD45.2 CD45.2 CD44 CD62L gate 0 64.6 0 CD8 35.4 4 0.0455 CD62L CD45.2 Donor cells 4.06 CD44 12 83.9 + Kb-ORF8-Tet gate 0 0.209 1.4 0 30.1 3.05 31.6 34.6 30.8 CD8 99.8 0 CD8 98.6 Host cells 0 CD8 69.9 CD45.2 0 CD45.2 Donor cells Control Kb-ORF8-Tet 0 CD127 Figure 2. In Vivo Responsiveness of Adoptively Transferred MHV-68-ORF8-Specific TCR TN CD8+ T Cells upon MHV-68 Infection Graded numbers of ORF8 TN cells were transferred into CD45.1 mice 1 day before i.p. infection with 1 3 106 pfu of MHV-68, and the fate and functionality of transferred cells were analyzed at different time points after infection. (A) A schematic of the experiments is shown. 464 Cell Reports 1, 461–471, May 31, 2012 ª2012 The Authors ORF8 APLs (A4, A6/A7, or D6/D7)-pulsed bone marrow-derived dendritic cells (BMDCs) for 3 days. Thus, lower levels of IL-2 were produced by TN cells stimulated by APL-pulsed BMDCs compared to controls (Figure 1G). We conclude that residues F5 and L9 act as strong anchors, whereas I4 and E6/E7 are most critical in making contacts with the TCR. From these experiments we identified APLs that were equipotent in stabilization of (binding to) H-2Kb but with inferior T cell stimulatory capacity (e.g., KNYAFEEKL). Other peptides were far worse at stabilizing H-2Kb but were still more potent at eliciting IFN-g production (e.g., KQYIFEEKL). In Vivo Responsiveness of ORF8 TN CD8+ T Cells after MHV-68 Infection To investigate the responsiveness of ORF8-specific CD8+ TN cells to virus infection, graded numbers of purified carboxyfluorescein succinimidyl ester (CFSE)-labeled or unlabeled CD8+ T cells from naive ORF8 TN mice (CD45.2+) were transferred into CD45.1+ C57BL/6 mice, which were then infected with MHV-68 intraperitoneally (i.p.) (Figure 2A). After 5.5 days, we measured the dilution of CFSE staining, an indicator of proliferation and activation markers such as CD44 in the transferred TN CD8+ T cells (Figure 2B). At this time, infected mice do not show significantly expanded populations of endogenous ORF8-specific cells (Gredmark-Russ et al., 2008), and almost all of the transferred cells homogeneously stained for Kb-ORF8-Tet (Figure S2D). The transferred cells underwent multiple rounds of division and upregulated the activation marker CD44 (Figure 2B). Expansion of TN donor cells was seen even when as few as 500 cells were transferred (Figure 2C). As expected, this expansion increased with the number of cells transferred, the maximum occurring upon transfer of 10,000–50,000 TN cells in different experiments (Figure 2C). A transfer of even greater numbers of TN cells resulted in a decrease in the frequencies of expanded donor cells, possibly because of limiting availability of antigen or cytokines, an issue not investigated further. The expanded TN cells were variably distributed over most of the lymphoid organs analyzed (data not shown). In a separate set of experiments, we examined the kinetics of induction, expansion, as well as contraction of ORF8 TN cells in response to infection. We transferred 50,000 ORF8 TN cells into CD45.1+ mice, which expanded until day 6–7, and then rapidly declined in numbers (Figure 2D). After 25 days, 2%–4% of the transferred cells that responded to viral infection persisted (Figure 2D). To investigate functional properties of ORF8 TN cells, we assessed their ability to produce IFN-g in response to infection. To this end, 50,000 naive TN cells were transferred into CD45.1+ mice, which were then infected with MHV-68. Five days later, spleen cells isolated from these mice were analyzed by ICCS. Although very few of the unstimulated cells scored positive for IFN-g production, up to 70%–75% of TN cells produced IFN-g upon peptide stimulation (Figures 2E and S2E). As a convincing demonstration of the fine specificity of ORF8 TN cells, we infected mice that had received 5 3 105 of CFSElabeled ORF8 TN cells with a mutant strain of MHV-68, created to carry a substitution in one of the anchor residues of the ORF8-derived peptide (MHV-68-ORF8 [L9A]) (Figure 2F). This mutation does not affect virus growth in vitro and in vivo (J.P.S., unpublished data). The transferred TN cells proliferated extensively upon infection with WT MHV-68 (Figure 2F, right panel), but fewer cells divided when mice were infected with the MHV-68-ORF8 (L9A) mutant virus (Figure 2F, middle panel). After infection with MHV-68ORF8 (L9A) mutant virus, endogenous ORF8-specific CD8+ T cells did not expand significantly, whereas those specific for other MHV-68 epitopes (derived from ORF61 and ORF75c) expanded at similar levels (Figure S2F). The mutation in anchor residue (L9A) therefore did not compromise viral growth in vivo and, with the exception of the absence of ORF8-specific CD8 T cells, induced T cell responses indistinguishable from WT virus. We also measured the phenotype of TN cells at the peak of their response at day 7–8 postinfection, and in the contraction as well as in the early memory phase, i.e., 18 and 35 days postinfection (dpi), respectively (Figures 2G–2I). At 8 dpi, similar to the endogenous ORF8-specific cells, all TN cells were activated, i.e., they upregulated PD1 and CD44 and downregulated CD62L (Figure 2G), demonstrating that TN cells behave similar to endogenous cells and therefore could be used as an alternative to investigate responsiveness of endogenous cells upon virus infection. At 18 dpi, large numbers of donor TN cells were CD44hi, CD62Llo, and of the surviving TN cells, more than 50% cells expressed CD127 (IL-7Ra), a marker for memory cells (Figure 2H). In the early memory phase of the response (35 dpi), (B) A total of 50 3 103 CFSE-labeled TN cells were transferred into CD45.1+ mice (n = 4) before MHV-68 infection and the proliferation as measured by the extent of CFSE dilution (upper panel) and activation as measured by CD44 upregulation (lower panel) of gated CD45.2+ transferred TN cells at 5.5 dpi. Representative FACS plots are shown. (C) Expansion of transferred TN cells as a function of input cell numbers was measured at 5.5 dpi. Indicated numbers of TN cells were transferred into three mice of each group. (D) Kinetics of the expansion of TN cells is shown when 50 3 103 cells were transferred before infection. At each time point, spleens of three mice were analyzed. (E) IFN-g producing ability of unstimulated and KNYIFEEKL peptide (1 mg/ml) stimulated ORF8 TN cells isolated from the spleens of MHV-68-infected mice at 5.5 dpi as measured by ICCS assays is shown. (F) CFSE-labeled ORF8 TN cells (5 3 105) were transferred into B6 mice (n = 12), which were divided then into three groups. One group of mice served as uninfected control; the other two groups of mice were infected with either 5 3 105 pfu of MHV-68 (WT) or 5 3 105 pfu of MHV-68-ORF8 (LA9). The frequencies and the extent of proliferation of transferred TN cells were measured at 6.5 dpi. (G) A total of 50 3 103 ORF8 TN cells were transferred in congenic CD45.1+ mice 1 day prior to MHV-68 infection with 1 3 106 pfu i.p. FACS plots show the phenotype of transferred ORF8 TN and endogenous Kb-ORF8-Tet+ cells at 7 dpi. (H and I) Phenotypic characterization of TN cells isolated from spleens of MHV-68-infected mice at18 dpi (H) and 35 dpi (I) as measured by the surface expression of indicated activation and memory markers. See also Figure S2. Cell Reports 1, 461–471, May 31, 2012 ª2012 The Authors 465 Days A 1 6-7 Infected with MHV-68 5x10 6 CFSE hiKNYIFEEKL + 5x10 6 CFSE lo ) 0 Transfer ORF8 TN Rag-/- cells (ip or in) B 2hr post transfer C uninfected infected with MHV68 44.3 57.2 42.8 60.7 89 39.3 %specific lysis 55.7 50x10 3 CD8 TN cells 500 CD8 TN cells No transfer * P = 0.03 100 11 *** P = 0.003 80 60 40 20 ll s ce 03 TN x1 x1 50 10 5 2 1 TN 6 10 4x TN 6 10 ce ce tro l lls lls 0 1x 10 6 TN ce lls lls ce 4x 1x 10 6 TN sf er 0 10 on 5000 ** (p = 0.005) * (p = 0.04) 15 C 10000 pfu/g of lung tissue (log10) ** (p = 0.006) an 23.7 600000 400000 200000 Tr 26.3 48.5 25.1 o 37.6 64.7 4x10 6TN cells 7.98 2.74 *** (p = 0.0004) N CD44 1x10 6TN cells 1.16 1.04 no of Kb-ORF8-Tet+ CD8+cells No Transfer Kb-ORF8-Tet F E 60.7 03 TN ce TN 2 10 5x no of ORF8 TN cells D 0.54 ce lls r fe ns tra no CFSE lls 0 transferred ORF8 TN cells no of ORF8 TN cells Figure 3. MHV-68-ORF8-Specific TCR TN CD8+ T Cells Protect Mice from MHV-68 Infection (A) Schematic for measuring the in vivo CTL activity of ORF8 TN cells is shown. Graded numbers of ORF8 TN CD8+ T cells were transferred into C57BL/6, which were then infected with 1 3 106 pfu of MHV-68 i.p. or 1 3 105 pfu i.n. At 6.5 dpi, 5 3 106 peptide-pulsed CD45.1+ splenocytes labeled with high concentrations of CFSE and 5 3 106 control CD45.1+ splenocytes labeled with low concentrations of CFSE were transferred intravenously. The proportion of CFSEhi and CFSElo cells among CD45.1+ cells was measured 2 hr after transfer, and the percent-specific lysis was calculated as described in Experimental Procedures section. (B) Representative FACS plots show the proportions of high and low CFSE-positive cells in indicated groups of mice. (C) Bar diagram shows the percent-specific lysis in different groups of mice. Statistical significance was determined by unpaired Student’s t test. For each group four to five mice were analyzed, and experiments were repeated three to four times. (D–F) Graded numbers of ORF8 TN cells were transferred into C57BL/6 mice (n = 20) 1 day prior to IN infection with 1 3 105 pfu of MHV-68. At 6 dpi, draining mediastinal LN and lungs were isolated from PBS-perfused mice and analyzed for the activation and expansion of transferred TN cells and viral burden, respectively. (D) Representative FACS plots show the frequencies of expanded Kb-ORF8-Tet+ cells in the mediastinal LNs of control and recipient mice. (E) Total number of expanded Kb-ORF8-Tet+ cells in the mediastinal LN of control and recipient mice is shown. Statistical significance was determined by ANOVA test. (F) Virus load in the lung homogenates of control and TN cell recipient mice as measured by plaque assays is shown. From each group five mice were analyzed. Statistical significance was determined by ANOVA test, and data are represented as mean ± SEM. almost all of the TN cells expressed CD127, a well-recognized marker of antigen-specific memory CD8+ T cells (Kaech et al., 2003), but only about 50% of the host cells scored positive for this marker (Figure 2I). 466 Cell Reports 1, 461–471, May 31, 2012 ª2012 The Authors ORF8 TN Cells Exhibit Cytolytic Activity and Control Viral Burden To assess the protective ability of TN cells, we performed in vivo cytolysis assays (Figure 3). Although few ORF8 peptide-loaded cells were killed in mice that did not receive TN cells, the disappearance of the target population was evident upon transfer of as few as 500 TN cells, and was more prominent with the transfer of greater numbers of cells (Figures 3B and 3C). These results demonstrate that ORF8 TN cells kill target cells in vivo. To investigate if TN cells contribute to the control of viral growth in MHV-68-infected mice, we transferred 1 3 106 and 4 3 106 ORF8 TN cells into C57BL/6 mice 1 day prior to intranasal (IN) infection with MHV-68 (Figures 3D–3F). At 6 dpi, we measured the frequencies as well as the absolute numbers of Tet+ cells in the draining mediastinal LN. Viral titers in the lungs were measured by plaque assay. Although only 1%–2% of CD8+ T cells were ORF8 Tet+ in infected controls that did not receive ORF8 TN cells (Gredmark-Russ et al., 2008), high relative frequencies and numbers of ORF8 Tet+ CD8+ T cells were present in the mediastinal LN of mice that received TN cells (Figures 3D and 3E). Most of the ORF8 Tet+ cells expressed high levels of CD44, consistent with their activation (Figure 3D). Viral titers were reduced by 100- to 1,000-fold in mice that received ORF8 TN cells compared to controls (Figure 3F). ORF8 TN cells thus confer a measure of protection against MHV-68 infection, even though only a single CD8+ T cell H-2Kb restricted epitope out of the 40 currently known (Freeman et al., 2010; Gredmark-Russ et al., 2008) is being targeted. Comparison of the Responsiveness of Kb-ORF8 TCR TN and Kb-OT-1 Tg CD8+ T Cells To test and compare the proliferation of ORF8 TN cells and OT-1 TCR transgenic cells in response to a lymphopenic environment, a setting that generates memory-like cells (Goldrath et al., 2000), 2 3 106 CFSE-labeled cells of each were transferred separately into C57BL/6 RAG/ and CD45.1 WT mice (Figures 4A–4D). After 10 days we assessed proliferation of the transferred cells, isolated from the lymphoid organs of recipient mice. Although in WT mice very few ORF8 TN or OT-1 Tg cells divided, a large majority of both cell types underwent multiple rounds of division in RAG/ mice (Figure S2G). Compared to OT-1 cells, fewer ORF8 TN cells divided (Figure 4B, upper panel, and Figure 4C). Because homeostatic expansion in response to lymphopenia is believed to be driven by cross-reactivity with self-peptideMHC complexes (Murali-Krishna and Ahmed, 2000), ORF8 TN cells are apparently less reactive to such self-antigens. Similar results were obtained when 1 3 106 each of CFSE-labeled ORF8 TN cells and OT-1 1 Tg cells were transferred into the same RAG/ recipients, and proliferation of Kb-SIIN-Tet+ and Kb-KNYI-Tet+ CD8+ T cells at 20 days post transfer was measured (Figure 4D). However, as shown below, this is not due to an intrinsic proliferative superiority of OT-1 Tg cells. To further demonstrate that self-reactivity drives lymphopeniainduced proliferation of both ORF8 TN and OT-1 Tg cells, we transferred equal numbers of ORF8 TN or OT-1 Tg cells into TAP/ mice. TAP/ mice are largely defective in loading class I MHC molecules with self-peptides, and consequently, upon adoptive transfer, only few CD8+ T cells persist in the periphery (Van Kaer et al., 1992). Even 20 days post-transfer in TAP/ mice, neither ORF8 TN nor OT-1 Tg cells divided (Figure 4B, lower panel, and Figure 4D). These findings underscore the relevance of exploring the functional properties of CD8+ T cells for more than a single TCR. Our results show that ORF8 TN cells proliferated to a lesser extent in a lymphopenic environment. Are ORF8 TN cells intrinsically hyporeactive when compared to OT-1 cells? To answer this question, we compared their antigen-specific responses under similar conditions of stimulation (Figures 4E–4I). We first measured the relative abilities of the KNYIFEEKL and SIINFEKL to stabilize surface H-2Kb on RMA/S cells. SIINFEKL peptide stabilized surface H-2Kb more efficiently than KNYIFEEKL peptide (Figures S2H and S2I). Thus, a 2- to 3-fold lower concentration of SIINFEEKL peptide was required to stabilize similar levels of H-2Kb, compared to KNYIFEEKL peptide. At saturating peptide concentrations (200 mg/ml = 169 mM of KNYIFEEKL and 208 mM of SIINFEKL), equivalent levels of H-2Kb were recorded. Therefore, BMDCs pulsed with these concentrations of the respective peptides were cocultured with CFSE-labeled naive ORF8 TN or OT-1 Tg T cells. Although few if any of the ORF8 TN or OT-1 cells divided when cocultured with control BMDCs, both ORF8 TN and OT-1 Tg CD8+ T cells underwent multiple rounds of division when cultured with peptide-pulsed BMDCs (Figures 4E–4G). The majority of OT-1 cells upregulated CD69 after 24 hr of coculture with BMDCs loaded with SIINFEKL peptide, whereas about 50% of ORF8 TN cells upregulated CD69 (Figure 4E). At later time points, both the ORF8 TN and OT-1 Tg CD8+ T cells that were CD69+ started dividing. Thus, at 36 hr post-coculture, 40% of ORF8 TN cells but only 25% of OT-1 Tg cells divided; these differences became more pronounced at 48 hr (70% of ORF8 TN versus 35% of OT-1 cells) and 72 hr (80%–90% of ORF8 TN versus 60% of OT-1 cells). Both populations of dividing cells downregulated CD69 and CD62L and upregulated CD44, with slower kinetics for OT-1 Tg cells (Figures 4E–4G). The differences in responsiveness of ORF8 TN and OT-1 Tg cells were also evident from the IL-2 levels in the culture supernatants (Figure 4H): only at 96 hr did the OT-1 Tg T cells catch up with ORF8 TN T cells. Antigenic stimulation thus produces subtly different outcomes for ORF8 TN and OT-1 Tg cells. If anything, ORF8 TN cells were superior in their activation and proliferative potential as measured ex vivo. Could such differences be attributable to differences in affinity of the respective TCRs? We performed tetramer dissociation assays as a surrogate measure for TCR affinities. As shown in Figure 4I, OT-1 Tg cells lost tetramer staining more rapidly and to a greater extent than did ORF8 TN cells, showing that the avidity with which ORF8 TN cells recognize peptide/class I MHC tetramers is higher than for OT-1 Tg cells. However, TN and transgenic CD8+ T cells may intrinsically differ in other properties because inherently different methodologies were used for obtaining them. DISCUSSION We generated Kb-MHV-68-ORF8604–612 TCR TN mice by SCNT to obtain a source of CD8+ T cells that recognizes a peptide derived from the ORF8 protein of MHV-68 (Gredmark-Russ et al., 2008). The nucleus from a virus-specific T cell is harvested and then reprogrammed to generate ESCs. The antigen-specific Cell Reports 1, 461–471, May 31, 2012 ª2012 The Authors 467 Figure 4. Comparison of the Responsiveness of Kb-ORF8-Tet+ TN and Kb-OT-1- Tg Cells (A) A schematic of the experiments performed to measure lymphopenia-induced proliferation is shown. A total of 2 3 106 CFSE-labeled or unlabeled ORF8 TN or OT-1 cells were transferred into RAG/ and TAP/ mice. (B) The FACS plots show the frequencies of CD8+ T cells in pooled LNs of recipient mice at 20 days post-transfer. (C) The quantitation of the frequencies of CD8+ T cells in the lymphoid organs of recipient RAG/ and TAP/ mice is shown. In each group three to four mice were used, and experiments were repeated two times. Statistical significance was determined by Student’s t test. Values are represented as mean ± SEM. **p % 0.01. ns, not significant. 468 Cell Reports 1, 461–471, May 31, 2012 ª2012 The Authors T cells are isolated directly from the infected mouse, and no in vitro culture or restimulation with antigen or coreceptors is required. The resulting ESCs, which carry the rearranged TCR a and b genes of the donor T cell, are then used to generate mice that are TN for the TCR in question and express the rearranged TCR genes of the donor cell (Kirak et al., 2010). These rearranged TCR genes are expressed from the endogenous loci under the control of their endogenous promoters, and without genetic scars other than those resulting from the physiological TCR rearrangement process. Accordingly, in mature T cells the pattern of TCR expression should resemble that of normal T cells as closely as possible. Indeed, we note that the distribution of the intermediate stages of T cell development found in the thymus of ORF8 TN mice more closely approximates a normal profile than what we observed for the OT-I transgenics. Nonetheless, precocious expression of the TCR in the course of T cell development is an unavoidable outcome for transgenic mice—and (presumably) for TN mice as well. The selection of the ORF8 epitope of MHV-68 was based on the notion that CD8+ T cell responses against MHV-68 are directed toward many epitopes in C57BL/6 mice (Freeman et al., 2010; Gredmark-Russ et al., 2008; Liu et al., 1999a) and that a focus on a more frequently recognized epitope might bias the overall response against the pathogen in question. We established functionality and protective ability of these TN cells in vivo as well as using a panel of ex vivo assays, discussed below. We could thus compare the responsiveness of ORF8 TN and OT-1 Tg cells in different settings. Compared to OT-1 cells, TN cells displayed different kinetics of activation, proliferation, and cytokine production, possibly due to the higher affinity of their TCR as approximated in a tetramer dissociation assay. CD8+ T cells obtained from ORF8 TN mice expanded upon viral infection and decreased the viral burden. This is all the more remarkable where the ORF8-derived epitope is only 1 of more than 40 H-2Kb and 20 H-2Db restricted epitopes currently known for MHV-68 (Freeman et al., 2010; Gredmark-Russ et al., 2008). This also suggests that activated CD8+ T cells specific for rare antigens, if expanded in a timely manner, might help control infection. Recognition of a single viral epitope, as might be achieved by an appropriate vaccination strategy, may be sufficient to afford protection against virus infection and perhaps subsequent latency. Human CD8+ T cells specific for either dominant or subdominant epitopes were equally potent in terms of their functional properties (Speiser et al., 2011). The use of immunodominant epitopes for vaccination purposes may not always be required, or even be the best approach, because this may lead to T cell exhaustion or may sometimes cause immunopathologies (Rickinson and Moss, 1997; Rouse and Sehrawat, 2010; Ruckwardt et al., 2010; Virgin et al., 2009; Welsh and Fujinami, 2007). The activation profile of TN cells was similar to that of endogenous CD8+ T cells specific for the same pathogen-derived epitope in the acute phase of resolving an MHV-68 infection. TN cells may therefore represent the closest possible approximation of the endogenous responses. A pathogen that causes a persistent infection, such as MHV-68, may continue to shed low levels of antigen that can activate recent thymic emigrants. These cells likely cover a spectrum of affinities for their respective antigen and cause them to respond to viral antigens with different kinetics (Freeman et al., 2010; Gredmark-Russ et al., 2008; Liu et al., 1999a). Moreover, the endogenous response against persistent pathogens is usually polyclonal in nature (Rickinson and Moss, 1997; Welsh and Fujinami, 2007). CD8+ T cells specific for viral antigens released during persistent infection may exhibit heterogeneity also in their surface molecules, as was evident from our results with ORF8 TN cells at least at day 18 after infection (Figure 2H). Others have also reported similar results with endogenous cells in the later stages of MHV-68 infection (Cush et al., 2007). Obviously, additional lines of TN mice may be required to achieve more complete coverage of the CD8+ T cell response. The memory response against pathogens that persist and release low levels of antigens intermittently is important because lifelong control of the infection is needed for the survival of host (Gray, 2002; Horst et al., 2011; Klenerman and Hill, 2005; Morens et al., 2004; van der Burg et al., 2011). Our results show that almost all of the TN cells exhibited a memory phenotype (CD127+) when investigated early in the memory phase, whereas only about 50% of endogenous cells expressed this marker. We also observed that the peak expansion of ORF8 TN cells was a few days earlier as compared to endogenous virus-specific CD8+ T cells. The recall response of ORF8 TN memory cells is not so easy to study because the natural immune response against MHV-68 includes the generation of neutralizing antibodies, the presence of which precludes a simple challenge experiment with the same virus (Andreansky et al., 2004). Our TN models may provide a stepping stone to explore in greater detail these and related issues in infection and vaccination against persistent viral infections. (D) A total of 1 3 106 CFSE-labeled ORF8 TN admixed with equal numbers of CFSE-labeled OT-1 Tg cells were transferred into same RAG/ mice. At 20 days after transfer, CFSE dilution in Kb-ORF8-Tet+ and Kb-SIIN-Tet+ was analyzed. Thick and thin lines in FACS plots represent the CFSE staining in ORF8 TN cells and OT-1 Tg cells, respectively. (E–I) Comparison of activation and proliferative capacities of OT-1 Tg and ORF8-TN cells. MACS-purified OT-1 and ORF8 TN cells were cocultured for varying time periods with BMDCs pulsed with 200 mg/ml of SIINFEKL or KNYIFEEKL peptide, respectively. The levels of CD69 expression and the extent of CFSE dilutions were measured at indicated time points. (E) Representative FACS plots for ORF8 TN (upper panel) and OT-1 (lower panel) cells are shown. (F) FACS plots for the levels of CD62L expression versus CFSE staining in ORF8 TN (upper panel) and OT-1 (lower panel) cells at 72 hr after coculture are shown. (G) FACS plots for the levels of CD44 expression versus CFSE staining for ORF8 TN and OT-1 cells at 96 hr after coculture are shown. (H) IL-2 levels in the culture supernatants of ORF8 TN and OT-1 Tg cells are shown. Statistical significance was determined by Student’s t test. (I) The results obtained from representative tetramer dissociation assay experiments for ORF8 and OT-1 cells are shown. The experiments were repeated three times, and statistical significance was determined by one-way ANOVA test. See also Figure S2. Cell Reports 1, 461–471, May 31, 2012 ª2012 The Authors 469 EXPERIMENTAL PROCEDURES Detailed information on mice, virus, cell lines, reagents used, and methodology can be found in the Extended Experimental Procedures. This study was carried out in strict accordance with the recommendations in the Guide for the Institutional Animal Care and Use Committee (IACUC) of the National Institutes of Health. Generation of ORF8 TN Mice and Purification of T Cells The schematic for the generation of Kb-MHV-68-ORF8 TN mice is shown in Figure 1A. The sequences for the rearranged a and b chains of TCR were identified as described elsewhere (Kirak et al., 2010). CD8+ T cells were purified by negative selection using a kit from Miltenyi Biotec as per the manufacturer’s instructions. For some experiments cell sorting of fluorescent antibodylabeled cells was performed using a FACSaria II instrument. License (CC-BY-NC-ND; http://creativecommons.org/licenses/by-nc-nd/3.0/ legalcode). ACKNOWLEDGMENTS We thank Barry T. Rouse of the University of Tennessee for critically reading the manuscript. We acknowledge technical help provided by Patti Wisniewski with FACS and Tom DiCesare for helping with figure drawing. The work was supported by funding from NIH. Received: December 15, 2011 Revised: March 7, 2012 Accepted: March 15, 2012 Published online: April 26, 2012 REFERENCES Measurement of Responsiveness of ORF8 TN CD8+ T Cells The responsiveness of ORF8 TN cells was measured using ICCS assays as described by Sehrawat et al. (2010). Various concentrations of index peptide, i.e., KNYIFEEKL and APLs that were used to stimulate ORF8 TN cells isolated from infected mice that received naive ORF8 TN cells 1 day before infection. IFN-g production by ORF8 TN cells was measured by flow cytometry using fluorochrome-labeled antibodies. In order to explore the fine specificity of TN cells using epitope variants, all measurements were expressed as fold change of EC50 values relative to those measured for the index peptide KNYIFEEKL. To measure the ex vivo stimulation of naive ORF8 TN cells by index peptide and different APLs, 1 3 105 of purified ORF8 TN cells isolated from lymphoid organs of TN mice were cocultured with 2 3 104 of ORF8 (APLs)-pulsed BMDCs for 72 hr at 37 C in a humidified incubator. IL-2 levels were measured in the culture supernatants at the end of incubation period by ELISA using a kit from BD Biosciences. Measuring the Functionality of ORF8 TN Cells upon Viral Infection Graded numbers of purified cells obtained from pooled LN and spleens of ORF8 TN mice were transferred into C57BL/6 or congenic CD45.1 mice 1 day prior to infection i.p. or IN with 1 3 106 pfu or 1 3 105 of MHV-68 in 200 and 50 ml vol, respectively. Cells were isolated from infected mice, stained, and analyzed by flow cytometry. To measure frequencies of IFN-g producing cells, ICCS and in vivo CTL assays were performed as described elsewhere (Sehrawat et al., 2010). The viral load in extracted lung tissue samples from different groups of mice was measured by standard plaque assays as described earlier (Marques et al., 2008). Statistical Analysis Statistical analysis to compare responses between groups was done by Student’s t test and ANOVA test as indicated in the figure legends. The results are presented as mean ± SEM or SD as indicated in figure legends. The p values are shown in the figures or figure legends and are represented as *p % 0.05, **p % 0.01, or ***p % 0.001. ACCESSION NUMBERS The NCBI accession numbers for the ORF8 TCR a and b chain sequences are JQ929654 and JQ969253, respectively. SUPPLEMENTAL INFORMATION Andreansky, S., Liu, H., Adler, H., Koszinowski, U.H., Efstathiou, S., and Doherty, P.C. (2004). The limits of protection by ‘‘memory’’ T cells in Ig-/mice persistently infected with a gamma-herpesvirus. Proc. Natl. Acad. Sci. USA 101, 2017–2022. Barton, E., Mandal, P., and Speck, S.H. (2011). Pathogenesis and host control of gammaherpesviruses: lessons from the mouse. Annu. Rev. Immunol. 29, 351–397. Belz, G.T., Stevenson, P.G., Castrucci, M.R., Altman, J.D., and Doherty, P.C. (2000). Postexposure vaccination massively increases the prevalence of gamma-herpesvirus-specific CD8+ T cells but confers minimal survival advantage on CD4-deficient mice. Proc. Natl. Acad. Sci. USA 97, 2725–2730. Cush, S.S., Anderson, K.M., Ravneberg, D.H., Weslow-Schmidt, J.L., and Flaño, E. (2007). Memory generation and maintenance of CD8+ T cell function during viral persistence. J. Immunol. 179, 141–153. Flaño, E., Woodland, D.L., and Blackman, M.A. (2002). A mouse model for infectious mononucleosis. Immunol. Res. 25, 201–217. Freeman, M.L., Lanzer, K.G., Cookenham, T., Peters, B., Sidney, J., Wu, T.T., Sun, R., Woodland, D.L., Sette, A., and Blackman, M.A. (2010). Two kinetic patterns of epitope-specific CD8 T-cell responses following murine gammaherpesvirus 68 infection. J. Virol. 84, 2881–2892. Fuse, S., Bellfy, S., Yagita, H., and Usherwood, E.J. (2007). CD8+ T cell dysfunction and increase in murine gammaherpesvirus latent viral burden in the absence of 4-1BB ligand. J. Immunol. 178, 5227–5236. Goldrath, A.W., Bogatzki, L.Y., and Bevan, M.J. (2000). Naive T cells transiently acquire a memory-like phenotype during homeostasis-driven proliferation. J. Exp. Med. 192, 557–564. Gray, D. (2002). A role for antigen in the maintenance of immunological memory. Nat. Rev. Immunol. 2, 60–65. Gredmark-Russ, S., Cheung, E.J., Isaacson, M.K., Ploegh, H.L., and Grotenbreg, G.M. (2008). The CD8 T-cell response against murine gammaherpesvirus 68 is directed toward a broad repertoire of epitopes from both early and late antigens. J. Virol. 82, 12205–12212. Horst, D., Ressing, M.E., and Wiertz, E.J. (2011). Exploiting human herpesvirus immune evasion for therapeutic gain: potential and pitfalls. Immunol. Cell Biol. 89, 359–366. Kaech, S.M., Tan, J.T., Wherry, E.J., Konieczny, B.T., Surh, C.D., and Ahmed, R. (2003). Selective expression of the interleukin 7 receptor identifies effector CD8 T cells that give rise to long-lived memory cells. Nat. Immunol. 4, 1191– 1198. Supplemental Information includes an Extended Discussion, Extended Experimental Procedures, and two figures and can be found with this article online at doi:10.1016/j.celrep.2012.03.009. Kirak, O., Frickel, E.M., Grotenbreg, G.M., Suh, H., Jaenisch, R., and Ploegh, H.L. (2010). Transnuclear mice with predefined T cell receptor specificities against Toxoplasma gondii obtained via SCNT. Science 328, 243–248. LICENSING INFORMATION Klenerman, P., and Hill, A. (2005). T cells and viral persistence: lessons from diverse infections. Nat. Immunol. 6, 873–879. This is an open-access article distributed under the terms of the Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported Liu, L., Flaño, E., Usherwood, E.J., Surman, S., Blackman, M.A., and Woodland, D.L. (1999a). Lytic cycle T cell epitopes are expressed in two distinct phases during MHV-68 infection. J. Immunol. 163, 868–874. 470 Cell Reports 1, 461–471, May 31, 2012 ª2012 The Authors Liu, L., Usherwood, E.J., Blackman, M.A., and Woodland, D.L. (1999b). T-cell vaccination alters the course of murine herpesvirus 68 infection and the establishment of viral latency in mice. J. Virol. 73, 9849–9857. Long, H.M., Taylor, G.S., and Rickinson, A.B. (2011). Immune defence against EBV and EBV-associated disease. Curr. Opin. Immunol. 23, 258–264. Mareeva, T., Martinez-Hackert, E., and Sykulev, Y. (2008). How a T cell receptor-like antibody recognizes major histocompatibility complex-bound peptide. J. Biol. Chem. 283, 29053–29059. Marques, S., Alenquer, M., Stevenson, P.G., and Simas, J.P. (2008). A single CD8+ T cell epitope sets the long-term latent load of a murid herpesvirus. PLoS Pathog. 4, e1000177. Molloy, M.J., Zhang, W., and Usherwood, E.J. (2011). Suppressive CD8+ T cells arise in the absence of CD4 help and compromise control of persistent virus. J. Immunol. 186, 6218–6226. Morens, D.M., Folkers, G.K., and Fauci, A.S. (2004). The challenge of emerging and re-emerging infectious diseases. Nature 430, 242–249. Murali-Krishna, K., and Ahmed, R. (2000). Cutting edge: naive T cells masquerading as memory cells. J. Immunol. 165, 1733–1737. Nash, A.A., and Sunil-Chandra, N.P. (1994). Interactions of the murine gammaherpesvirus with the immune system. Curr. Opin. Immunol. 6, 560–563. Obar, J.J., Crist, S.G., Gondek, D.C., and Usherwood, E.J. (2004a). Different functional capacities of latent and lytic antigen-specific CD8 T cells in murine gammaherpesvirus infection. J. Immunol. 172, 1213–1219. Obar, J.J., Crist, S.G., Leung, E.K., and Usherwood, E.J. (2004b). IL-15-independent proliferative renewal of memory CD8+ T cells in latent gammaherpesvirus infection. J. Immunol. 173, 2705–2714. Rickinson, A.B., and Moss, D.J. (1997). Human cytotoxic T lymphocyte responses to Epstein-Barr virus infection. Annu. Rev. Immunol. 15, 405–431. protect against immunopathology caused by a dominant epitope. J. Immunol. 185, 4673–4680. Sehrawat, S., Reddy, P.B., Rajasagi, N., Suryawanshi, A., Hirashima, M., and Rouse, B.T. (2010). Galectin-9/TIM-3 interaction regulates virus-specific primary and memory CD8 T cell response. PLoS Pathog. 6, e1000882. Simas, J.P., and Efstathiou, S. (1998). Murine gammaherpesvirus 68: a model for the study of gammaherpesvirus pathogenesis. Trends Microbiol. 6, 276–282. Speiser, D.E., Wieckowski, S., Gupta, B., Iancu, E.M., Baumgaertner, P., Baitsch, L., Michielin, O., Romero, P., and Rufer, N. (2011). Single cell analysis reveals similar functional competence of dominant and nondominant CD8 T-cell clonotypes. Proc. Natl. Acad. Sci. USA 108, 15318–15323. van der Burg, S.H., Arens, R., and Melief, C.J. (2011). Immunotherapy for persistent viral infections and associated disease. Trends Immunol. 32, 97–103. Van Kaer, L., Ashton-Rickardt, P.G., Ploegh, H.L., and Tonegawa, S. (1992). TAP1 mutant mice are deficient in antigen presentation, surface class I molecules, and CD4-8+ T cells. Cell 71, 1205–1214. Virgin, H.W., Wherry, E.J., and Ahmed, R. (2009). Redefining chronic viral infection. Cell 138, 30–50. Virgin, H.W., 4th, Latreille, P., Wamsley, P., Hallsworth, K., Weck, K.E., Dal Canto, A.J., and Speck, S.H. (1997). Complete sequence and genomic analysis of murine gammaherpesvirus 68. J. Virol. 71, 5894–5904. Welsh, R.M., and Fujinami, R.S. (2007). Pathogenic epitopes, heterologous immunity and vaccine design. Nat. Rev. Microbiol. 5, 555–563. Rouse, B.T., and Sehrawat, S. (2010). Immunity and immunopathology to viruses: what decides the outcome? Nat. Rev. Immunol. 10, 514–526. Woodland, D.L., Usherwood, E.J., Liu, L., Flaño, E., Kim, I.J., and Blackman, M.A. (2001). Vaccination against murine gamma-herpesvirus infection. Viral Immunol. 14, 217–226. Ruckwardt, T.J., Luongo, C., Malloy, A.M., Liu, J., Chen, M., Collins, P.L., and Graham, B.S. (2010). Responses against a subdominant CD8+ T cell epitope Wu, T.T., Blackman, M.A., and Sun, R. (2010). Prospects of a novel vaccination strategy for human gamma-herpesviruses. Immunol. Res. 48, 122–146. Cell Reports 1, 461–471, May 31, 2012 ª2012 The Authors 471