Solids NMR of Biomolecules BCMB/CHEM 8190

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Solids NMR of Biomolecules

BCMB/CHEM 8190

Techniques in Solids NMR

• Magic Angle Spinning (MAS)

• High Power Decoupling

• Cross Polarization (CP)

• Assignment Strategies

• Structural Information

Dipole-Dipole Interaction are Large:

z

 r

B

0

1 r

2 x

 y

E = (

0

/4

)((

1

·

2

)/r 3 – 3( 

1

· r )(

2

· r )/r 5 ) r = i r x

+ j r y

+ k r z

= i r sin

 cos

+ j r sin

 sin

+ k r cos

First Order QM Term ( I z1

I z2

) is most Important

A doublet results – much like scalar coupling but large:

60,000 Hz for a 13 C1 H pair,

250,000 Hz for 1 H1 H .

Splittings are angle dependent – ranging from

-60,000 to +30,000 for 13 C1 H. All possibilities superimpose: The result is a powder pattern

Points at 90º on a sphere are most abundant

D

Other Anisotropies in NMR

H = H

CSA

+ H

D

+ H

Q

...

All share the following property:

Solution: < 3 cos

2

' – 1 > = 0

Solids: (3 cos

2

' – 1) ≠ 0

CSA powder pattern

Magic Angle Spinning

• All interactions can be written in terms of Y 2

0

(

) = (3cos 2 (

) –1)/2

• Y 2

0

(

) can be transformed to another frame using Wigner Rotation elements: Y 2

0

(

) =

2 m=-2

D 2 m0

(

 ’’,  ’’) Y 2 m

(

 ’,  ’)

• D 2 m0

(

 ’’,  ’’) = (4 

/5) Y 2 m

(

 ’’,  ’’)

• With rapid averaging over  ’’, all terms except Y 2

0

(

 ’’) go to zero

• Selecting  ’’ = 54.7

, all interactions, regardless of

 ’ value, are zero

• (3cos 2 (

) –1) = (3cos 2 (

 ’)–1) <3cos 2 (54.7

) –1> = 0

Z

 ’’

Dipolar couplings

CSA

Quadrupolar couplings

= 0

’’

X

 ’

Y

High power decoupling

• MAS only works if rate >> D

– Maximum rate ~50 kHz, typical 10kHz

– High speed rotors ~ 1mm diameter

• Decoupling helps

– Easy in solution 13 C1 H J = ~125 Hz

– Solids 13 C1 H J + D = ~60 kHz

• Solution is to do both

What is this peak?

Cellulose

(10 minute spectra)

13 C

Cross Polarization Improves Sensitivity selects for carbons with nearby protons

Magnetization transfer via dipolar coupling.

Hartman-Hahn: g

I

B

I

= g

S

B

S

Spinning Sidebands are Frequently Seen

When rotation rate is not >> anisotropies

Resonance position is modulated by rotation

Sidebands at the spinning frequency are produced

There are tricks that remove these:

TOSS – Total Suppression of Spinning Sidebands

180º pulses during rotor cycle dephases sideband magnetization but preserves center band magnetization

Peptide

1,213 C

2

-Gly

(9 minute spectra)

2D spectra use a variety of connectivities

here: proton driven spin diffusion

Aliphatic region of the 13 C, 13 C CP MAS PDSD of Zn-MMP-12 (16.4 T,

11.5 kHz MAS frequency, 15 ms mixing time). ( Balayssac, Oschkinat, 2007)

Experiments can parallel solution assignment strategies

(C) Backbone walk for the A21

–A28 stretch of residues in LC8 using three-dimensional NUS-PACC NCACB and NCOCA experiments. The total experiment times are 27 and 9 h for the NCACB and NCOCA experiments, respectively. Reproduced with permission from ref 6. Copyright 2012 American Chemical Society.

Published in: Si Yan; Christopher L. Suiter; Guangjin Hou; Huilan Zhang; Tatyana Polenova; Acc. Chem. Res.

2013, 46, 2047-2058.

DOI: 10.1021/ar300309s

Copyright © 2013 American Chemical Society

Getting Distance Information

REDOR (rotational echo double resonance)

Gullion T, Schaefer J (1989) J Magn Reson 81:196

• Refocuses the effects of MAS on dipolar coupling

• Two 180 degree pulses every rotor period

• Get phase modulation due at magnitude of dipolar coupling

1 H

90x 180y

15 N

180y……. 180y……

 r

 r

 r

 r

 r

 r

Antibiotics & bacterial growth

Schaefer Laboratory, Washington University, St. Louis, MO

Distances can be extracted using REDOR-like mixing

(A) 2D 13C –13C CORD sequences: (1) basic CORD; (2) CORDxix; (3) CORDxy4. These irradiation schemes are composites of rotor-synchronized R2 nv -symmetry sequences, R211 (ωrf = ωr), R212 (ωrf = ωr), R221 (ωrf = 1/2 ωr), and R222 (ωrf = 1/2 ωr).

Each R2 nv element consists of two π pulses per n rotor periods. (B) 2D 13C –13C CORDxy4 spectra of U–13C,15N-LC8 (ωr =

40 kHz). Polarization transfer is uniformly efficient in both aliphatic and carbonyl regions of the spectrum.(11) Thioredoxin

Published in: Si Yan; Christopher L. Suiter; Guangjin Hou; Huilan Zhang; Tatyana Polenova; Acc. Chem. Res.

2013, 46, 2047-2058.

DOI: 10.1021/ar300309s

Copyright © 2013 American Chemical Society

Angular dependence of dipolar interaction vectors

Separated local field spectra (PISEMA)

15 N chemical shift

Gopinath, T.; Mote, KR.; Veglia, G (2013)

Sarcolipin in an oriented bicelle

Annual Reviews

2D solid-state NMR spectra of uniformly 15 N, 13 Clabeled Aβ

1-40 amyloid fibrils. ( a ) 2D 13 C13 C NMR spectrum, obtained in a 14.1-T magnetic field with 13.6-kHz magic-angle spinning, using a

2.94-ms finite-pulse radiofrequency-driven recoupling

(fpRFDR) sequence for spin polarization transfer in the mixing period. ( b ) 2D 15 N13 C spectrum, obtained with frequency-selective

15 N13 C cross-polarization followed by fpRFDR in the mixing period.

GPCR (CXCR1) structure in phospholipid bilayers

Park, ….Opella, SJ., Nature 491:779 (2012)

SOLIDS NMR REFERENCES

Opella, S.J. (2013) Structure Determination of Membrane Proteins by NMR

Spectroscopy Annual Rev. Anal. Chem, 6: 305-328.

Yan, S, Suiter, CL, Hou, G, Zhang, H and Polenova, T. (2013) Probing Structure and

Dynamics of Protein Assemblies by Magic Angle Spinning NMR Spectroscopy,

Accounts Chem. Research 46: 2047-2058.

Gopinath, T.; Mote, KR.; Veglia, G (2013) Sensitivity and resolution enhancement of oriented solid-state NMR: Application to membrane proteins, Prog. NMR

Spectroscopy 75: 50-68.

Solid-state NMR of matrix metalloproteinase 12: An approach complementary to solution NMR (2007) Balayssac S, Bertini I, Falber K, Oschkinat, H, et al.

CHEMBIOCHEM 8 486-489.

Solid-State NMR Studies of Amyloid Fibril Structure (2011) Tycko R. Ann. Rev. Phys.

Chem. 62, 279-299.

Recent contributions from solid-state NMR to membrane protein structure and function, Judge, PJ and Watts, A, (2011) Cur. Opin. Chem. Biol. 15, 690-695.

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