2009 GEM Public Cooperator Report Mark Campbell, Avinash Karn, Andrew Green, George Shin, Stacy Marshal, Emily Mauch, Samah Hassan, Suzannes Pitts, Denyse Schrenker (Truman State), Jay-lin Jane, Hongxin Jiang, (Iowa State University), Don Auger and Yusheng Wu (South Dakota State Unversity) Chicago ASTA meeting– December 9th 2009. Introduction Truman States role as GEM public cooperator has focused on the development of Amylomaize VII germplasm using GEM breeding material combined with existing mutations influencing starch properties and carbohydrate metabolism. We feel that our grain quality work complements other GEM members in the primary directive which includes demonstrating that the crop diversity maintained by the National Plant Germplasm system, although challenging to systematically assess, can harbor traits for improving yield, plant health and improving end use for numerous industrial and nutritional appliations. Over the past year our work has focused on 1) continuing to better understand starch properties our GEMS-0067, 2) studying the inheritance of a major modifier gene that appears (but is not fully confirmed) to be a novel allele of sbe1 (starch branching enzyme 1) which we shall refer (perhaps prematurely) to as sbe1:gm67 that together with the recessive ae (amyloseextender allele, AKA starch branching enzyme 2b [sbe2b]) allele elevates starch amylose to 70% (i.e. amylomaize class VII), 3) establishment and training of students of an SSR marker lab at Truman State University in order to initiate studies on examining the feasibility of conducting marker assisted selection (MAS) for development of high amylose genotypes in the development of GEM amylomaize VII germpalsm. In addition, some preliminary studies have begun in order to 4) evaluate a potentially more rapid means of sample preparation based on DMSO leachate, 5) more closely evaluate GEM-amylomaize germplasm by Scanning electron microscopy (SEM) of endoperms starch in-situ. Germplasm development remains top priority with 6) continued development of novel parent amylomaize VII lines using GEM releases and 7) hybrid evaluation using these parents. We currently have also 8) developed early generations of materials believed to be homozygous for ae and waxy (wx) from Truman’s high amylose material and GEM lines converted by National Starch and Chemical Co (Indianapolis, IN). Much of the material is also segregating sbe1:gm67. Finally, 9) another paralog of starch branching loci, starch branching 2a, in which a mutant form (sbe2a:mu) identified by M. Guiltinan (Penn State) is currently being incorporated into some recent GEM releases in order to observe background effect on expression of this interesting gene. Germplasm Development Amylomaize VII inbreds For a number of years we have mainly been working toward developing a large set of genetically diverse amylomaize inbred lines using only GEM materials and usually keeping lines distinctly of a Stiff Stalk (SS) or Non-stiff Stalk (NS) when possible. When we began this project little was know of the inheritance of the modifier trait. We now believe that the modifier gene is likely allelic to sbe1a as mentioned earlier however other factors could very likely be involved. Our current lines that we have, have been selected from starch analysis and likely possess sbe1:gm67 allele however future genetic analysis will be necessary to confirm this. A theoretical scheme describing the genetics involved in the selection process is illustrated in Fig. 1. A list of lines currently believed to possess ae and sbe1:gm67 are shown in Table 1. A description of the genetations leading up to their development are also shown. Although the information seems excessively detailed, we need to consider this information expecially when working with SSR markers for selection in the future. Until now selection has been based entirely on anlalysis of starch amylose we cannot, at this point, confirm that these lines are fixed for these two recessive alleles. Figure 1. Example of the selection procedure for the development of amylomaize VII germplasm assuming genes that are needed for recovery consist of mainly amylose-extender (ae) and a putative novel allele of starch branching enzyme 1 (tentatively described as sbe1:gm67) originating from Guat209:S13 (A). Location of known starch branching enzyme paralogs in the maize genome (B) % Pedigree Comprise d of GEMS-67 Generation DKXL370:N11a20-31-1-B-B-SIB/// GUAT209:S13//OH43ae/H99ae SCR01:N1310-358-1-B-B///GUAT209:S13//OH43ae/H99ae UR13085:N0215-14-1-B///GUAT209:S13//OH43ae/H99ae UR13085:N0215-14-1-B///GUAT209:S13//OH43ae/H99ae CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae/H99ae 50 50 50 50 50 08-450-1 08-331 -1 08-364 -1 08-488 -1 08-490 -1 07-348-2 07-243-1 07-267-1 07-370-2 07-380-1 05-318-5 04-498-4 06/07-34 05-93-11 05-95-3 04-132 06-250 05-96-3 06-256 05-81-3 AR03056:N09-24-1-B-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae/H99ae AR03056:N09-182-1-B-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae/H99ae CH05015:N1204-57-1-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae/H99ae AR03056:N09-24-1-B-B-B////DKXL370:N11a20-31-1-B-B-SIB///GUAT209:S13//OH43ae/H99ae AR03056:N09-182-1-B-B-B////DKXL370:N11a20-31-1-B-B-SIB///GUAT209:S13//OH43ae/H99ae AR03056:N09-191-1-B-B-B////DKXL370:N11a20-31-1-B-B-SIB///GUAT209:S13//OH43ae/H99ae AR03056:N09-250-1-B-B-B////DKXL370:N11a20-31-1-B-B-SIB///GUAT209:S13//OH43ae/H99ae DKXL370:N11a20-234-2-B-B-B////DKXL370:N11a20-31-1-B-B-SIB///GUAT209:S13//OH43ae/H99ae FS8B(T):N11a-322-1-B-B////DKXL370:N11a20-31-1-B-B-SIB///GUAT209:S13//OH43ae/H99ae CH05015:N1204-57-1-B-B////DKXL370:N11a20-31-1-B-B-SIB///GUAT209:S13//OH43ae/H99ae CH05015:N1204-57-1-B-B////DKXL370:N11a20-31-1-B-B-SIB///GUAT209:S13//OH43ae/H99ae DREP150:N2011d-624-1-B-B////DKXL370:N11a20-31-1-B-B-SIB///GUAT209:S13//OH43ae/H99ae DKXL370:N11a20-199-002-B-B-B-Sib////(FS8A(S):S09-362-1-B///GUAT209:S13//OH43ae/H99ae CH05015:N1502-086-001-B-B-B////(FS8A(S):S09-362-1-B///GUAT209:S13//OH43ae/H99ae DK212T:N11a12-191-001-B-B-B////DKXL370:N11a20-31-1-B-B-SIB///GUAT209:S13//OH43ae/H99ae 25 25 25 25 25 25 25 25 25 25 25 25 25 25 25 08-314 -1 08-318 -1 08-320 -1 08-370 -1 08-376 -1 08-388 -1 08-392 -1 08-394 -1 08-410 -1 08-414 -1 08-416 -1 08-422 -1 08-88-9/509 08-93-7/509 08-99-7/473 07-180-1 07-182-2 07-190-1 07-276-1 07-280-1 07-286-1 07-288-2 07-290-2 07-296-1 07-300-2 07-312-2 07-319-1 04GEM00 05GEM06 07GEM02 06/07-11 06/07-12 06/07-26 06-502-4 06-503-1 06-505-1 06-508-3 06-512-1 06-519-1 06-526-4 06-525-2 06-532-2 AR03056:N09-191-001-B-B-B-Sib/////AR03056:N09-182-1-B-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43 AR03056:N09-191-001-B-B-B-Sib/////DKXL370:N11a20-234-2-B-B-B////DKXL370:N11a20-31-1-B-B-SIB///GUAT20 BARBGP2:N08a18-332-001-B-B-B/////CH05015:N1204-57-1-B-B////DKXL370:N11a20-31-1-B-B-SIB///GUAT209:S CH05015:N1502-086-001-B-B-B/////AR03056:N09-182-1-B-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43a CH05015:N1502-086-001-B-B-B////DKXL370:N11a20-31-1-B-B-SIB///GUAT209:S13//OH43ae/H99ae DK212T:N11a12-191-001-B-B-B/////AR03056:N09-182-1-B-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43a DK212T:N11a12-191-001-B-B-B/////AR03056:N09-24-1-B-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae DK212T:N11a12-191-001-B-B-B/////CH05015:N1204-57-1-B-B////DKXL370:N11a20-31-1-B-B-SIB///GUAT209:S13 DKXL370:N11a20-199-002-B-B-B-Sib/////AR03056:N09-182-1-B-B-B////DKXL370:N11a20-31-1-B-B-SIB///GUAT20 DKXL370:N11a20-199-002-B-B-B-Sib/////AR03056:N09-24-1-B-B-B////CH05015:N15-3-1-B-B///GUAT209:S13//OH DKXL370:N11a20-199-002-B-B-B-Sib/////CH05015:N1204-57-1-B-B////DKXL370:N11a20-31-1-B-B-SIB///GUAT209 12.5 12.5 12.5 12.5 12.5 12.5 12.5 12.5 12.5 12.5 12.5 03-252-2 04-121 03-380-1/484 04-133 04-91 02-4-3 01/02-3 bulk 01-311-5/250 GEM 03-377-7/482 SCR01:N1310-358-1-B-B UR13085:N0215-14-1-B 03-380-2/486 UR13085:N0215-14-1-B 03-367-5/483 CH05015:N15-3-1-B-B 06-66/255,256 AR03056:N09-24-1-B-B-B 06-67/257 AR03056:N09-182-1-B-B-B 06-78 /255,256 CH05015:N1204-57-1-B-B 06-78 /255,256 05:2/318 02GEM00074 05/06-11 05:3/318 02GEM00076 05/06-13 05:5/318 02GEM00079 05/06-15 05:8/318 02GEM00075 05/06-18 05:12/318 02GEM003g5 05/06-22 05:19/318 03GEM00169 05/06-29 05:26/318 03GEM00182 05/06-36 05:25/318 03GEM00182 05/06-35 05:32/318 04GEM00530 08-85-1/318 04GEM00 08-86-1/409 04GEM00 08-92-2/420 05GEM06 08-96-3/318 05GEM06 08-95-2/518 05GEM06 08-100-1/31807GEM02 08-98-4/317 07GEM02 08-97-2/419 05GEM06 08-89-4/378 04GEM00 08-90-1/314 04GEM00 08-87-2/418 04GEM00 Table 1. Non-stiff stalk (Red) Amylomaize lines and generations leading to their development. % Pedigree Comprise d of GEMS-67 Generation AR16035:S02-615-1-B-B/// GUAT209:S13//OH43ae/H99ae FS8A(S):S09-362-1-B///GUAT209:S13//OH43ae/H99ae CUBA164:S2012-444-1-B///GUAT209:S13//OH43ae/H99ae 2011-01_SE32_S17_F2S4_9148-Blk22/00-sib///GUAT209:S13//OH43ae/H99ae UR10001:S1813-257-1///GUAT209:S13//OH43ae/H99ae 50 50 50 50 50 08-449-1 08-508 -1 08-516 -1 08-324 -1 08-340 -1 07-343-1 07-387-2 07-391-3 07-236-1 07-248-3 05-315-2 06-258 06-260 06/07-31 06/07-37 04-499-2 05-171-4 05-110-2,1 05-98-1 05-127 03-265-5 04-118 04-96 04-64 04-130 CHRIS775:S1911b-120-1-B-B-B////(CUBA164:S2012-444-1-B///GUAT209:S13//OH43ae/H99ae CHIS740:S1411a-783-2-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CUBA164:S1511b-325-1-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CUBA164:S2012-966-1-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae DKB844:S1601-73-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae DKB844:S1601-073-001-B-B-B-B-B////UR10001:S1813-257-1///GUAT209:S13//OH43ae/H99ae DKB844:S1601-073-001-B-B-B-B-B////UR10001:S1813-257-1///GUAT209:S13//OH43ae/H99ae BVIR155:S2012-029-001-B-B////UR10001:S1813-257-1///GUAT209:S13//OH43ae/H99ae CUBA164:S2012-444-001-B-B-Sib////(2011-01_SE32_S17_F2S4_9148-Blk22/00-sib///GUAT209:S13//OH43ae/H9 GUAT209:S1308a-120-001-B-B////UR10001:S1813-257-1///GUAT209:S13//OH43ae/H99ae CUBA164:S1511b-325-001-B-B-B-B-B-Sib////(SCR01:N1310-358-1-B-B///GUAT209:S13//OH43ae/H99ae CUBA164:S2008c-289-001-B-B/////AR03056:N09-24-1-B-B-B////DKXL370:N11a20-31-1-B-B-SIB///GUAT209:S13// 25 25 25 25 25 25 25 25 25 25 25 25 25 08-322 -1 08-425 -1 08-430 -1 08-434 -1 08-440 -1 08-534 -1 08-115-1/348 08-116-3/348 08-122-1/347 08-105-1/325 08-118-2/360 08-103-1/322 08-123-1/370 07-211-2 07-320-1 07-324-2 07-326-1 07-334-1 07-330-3 05GEM06 05GEM06 07GEM02 04GEM00 07GEM02 04GEM00 07GEM02 06/07-16 06-533-3 06-536-2 06-539-2 06-548-3 06-543-1 06-71 /253,254 05/06-43 05/06-46 05/06-49 05/06-58 05/06-53 CHRIS775:S1911b-120-1-B 05:33/315 02GEM00442 05:36/315 02GEM04362 05:39/315 03GEM002g1 05:48/315 03GEM00481 05:43/315 03GEM00118 CUBA164:S2012-444-001-B-B-Sib////(2011-01_SE32_S17_F2S4_9148-Blk22/00-sib///GUAT209:S13//OH43ae/H9 CHIS775:S1911b-120-001-B-B-B-B////(2011-01_SE32_S17_F2S4_9148-Blk22/00-sib///GUAT209:S13//OH43ae/H CHIS775:S1911b-120-001-B-B-B-B/////CHIS740:S1411a-783-2-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//O CHIS775:S1911b-120-001-B-B-B-B////(2011-01_SE32_S17_F2S4_9148-Blk22/00-sib///GUAT209:S13//OH43ae/H CHIS775:S1911b-120-001-B-B-B-B/////CHIS740:S1411a-783-2-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//O DKB844:S1601-073-001-B-B-B-B-B/////CHIS740:S1411a-783-2-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//O DKB844:S1601-073-001-B-B-B-B-B/////CUBA164:S1511b-325-1-B-B////AR16035:S02-615-1-B-B///GUAT209:S13// 2088-01_DK212T_S11_F2S4_9157-Blk29/00-sib-B-B-B/////DKB844:S1601-73-1-B-////AR16035:S02-615-1B///GUA GUAT209:S1308a-047-001-B-B/////CHIS740:S1411a-783-2-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH4 12.5 12.5 12.5 12.5 12.5 12.5 12.5 12.5 12.5 08-106-1/328 08-109-2/325 08-110-2/425 08-111-2/327 08-112-1/424 08-113-5/425 08-114-5/429 08-117-4/444 08-120-1/425 04GEM00 05GEM06 05GEM06 05GEM06 05GEM06 05GEM06 05GEM06 06GEM01 07GEM02 Table 2. Stiff stalk (Blue) Amylomaize lines and generations leading to their development. 02-33-1 03-375-1/494 03-368-2/490 03-358-2/488 03-379-1/492 01/02-34-BULK 01-327-4/242 G FS8A(S):S09-362-1-B CUBA164:S1511b-325-1 2011-01_SE32_S17_F2S4 UR10001:S1813-257-1 Amylose analysis of inbreds Amylose data was collected from numerous families within lines as is routinely done to confirm through starch analysis the presence of the modifier. As mentioned in last years report, the summer of 2008 was extremely wet and combined with our poorly drained Missouri clay loam inbred plants were stunted and suffered although they did produce grain samples. These conditions also strongly influenced amylase values of starches. In many cases starch values of lines expected to have amylose at 70 to 75%, instead gave values in the 80’s, 90’s and even over 100% (relative to commercial standards). Although a considerable amount of analytical data was collected it was decided that no culling of material was to occur and that all material was planted ear-to-row (2 ears per row in 2008 grown as 2 rows in 2009) making for a much larger than anticipated nurser (Table 3) Our nursery again suffered from excessive rain (current rain total this year is 59.5) where average rain for NE Missouri is 29.5 in. Material will be analyzed and together with marker data perhaps lines with fixed modifier genes will be identified. As a side comment, the lines surviing the past few years at Truman might possibly have root systems with unusually good adaptation to poorly drained clay pan soils. Table 3. 2009 nursery enteries showing lines grown from 2008 all grown again for another generation of inbreeding without having been discarded because of erounous amylose data due possible to excessive moisture during the summer of 2008. Material will be subjected for re-analysis in 2009/2010 although 2009 was also and excessively wet year. The bottom line is there is a great deal of genetic material that needs to be grown in a good environment to produce quality ears to make an accurate assessment of amylose data!! 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 5463 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 08- 314 08- 314 08- 315 08- 315 08- 316 08- 316 08- 317 08- 317 08- 318 08- 318 08- 319 08- 319 08- 320 08- 320 08- 321 08- 321 08- 331 08- 331 08- 332 08- 332 08- 333 08- 333 08- 334 08- 334 08- 335 08- 335 08- 336 08- 336 08- 337 08- 337 08- 338 08- 338 08- 339 08- 339 08- 364 08- 364 08- 365 08- 365 08- 366 08- 366 08- 367 08- 367 08- 368 08- 368 08- 369 08- 369 08- 370 08- 370 08- 371 08- 371 08- 372 08- 372 08- 373 08- 373 08- 374 08- 374 08- 375 08- 375 08- 376 08- 376 08- 377 08- 377 08- 378 08- 378 08- 379 08- 379 08- 380 08- 380 08- 381 08- 381 08- 382 08- 382 08- 383 08- 383 08- 384 08- 384 08- 385 08- 385 08- 387 08- 387 08- 388 08- 388 08- 389 08- 389 08- 390 08- 390 08- 391 08- 391 08- 392 08- 392 08- 393 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 AR03056:N09-24-1-B-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 AR03056:N09-24-1-B-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 AR03056:N09-24-1-B-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 AR03056:N09-24-1-B-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 AR03056:N09-24-1-B-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 AR03056:N09-24-1-B-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 AR03056:N09-24-1-B-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 AR03056:N09-24-1-B-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 AR03056:N09-182-1-B-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 AR03056:N09-182-1-B-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 AR03056:N09-182-1-B-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 AR03056:N09-182-1-B-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 CH05015:N1204-57-1-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 CH05015:N1204-57-1-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 CH05015:N1204-57-1-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 CH05015:N1204-57-1-B-B////(CH05015:N15-3-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 (SCR01:N1310-358-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 (SCR01:N1310-358-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 (SCR01:N1310-358-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 (SCR01:N1310-358-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 (SCR01:N1310-358-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 (SCR01:N1310-358-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 (SCR01:N1310-358-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 (SCR01:N1310-358-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 (SCR01:N1310-358-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 (SCR01:N1310-358-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 (SCR01:N1310-358-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 (SCR01:N1310-358-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 (SCR01:N1310-358-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 (SCR01:N1310-358-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 (SCR01:N1310-358-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 (SCR01:N1310-358-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 (SCR01:N1310-358-1-B-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 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509 509 510 510 511 511 512 512 513 513 514 514 516 516 517 517 534 534 535 535 536 536 537 537 538 538 539 539 540 540 541 541 542 542 543 543 544 544 545 545 546 546 547 547 548 548 549 549 550 550 2 1 2 1 2 1 2 1 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 1 2 CUBA164:S2012-966-1-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CUBA164:S2012-966-1-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CUBA164:S2012-966-1-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae DKB844:S1601-73-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae DKB844:S1601-73-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae DKB844:S1601-73-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae DKB844:S1601-73-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae DKB844:S1601-73-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae DKB844:S1601-73-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae DKB844:S1601-73-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae DKB844:S1601-73-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae DKB844:S1601-73-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae DKB844:S1601-73-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae DKB844:S1601-73-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae (FS8A(S):S09-362-1-B///GUAT209:S13//OH43ae/H99ae 2-1-1 ) - 1 (FS8A(S):S09-362-1-B///GUAT209:S13//OH43ae/H99ae 2-1-1 ) - 1 (FS8A(S):S09-362-1-B///GUAT209:S13//OH43ae/H99ae 2-1-1 ) - 1 (FS8A(S):S09-362-1-B///GUAT209:S13//OH43ae/H99ae 2-1-1 ) - 1 (FS8A(S):S09-362-1-B///GUAT209:S13//OH43ae/H99ae 2-1-1 ) - 1 (FS8A(S):S09-362-1-B///GUAT209:S13//OH43ae/H99ae 2-1-1 ) - 1 (FS8A(S):S09-362-1-B///GUAT209:S13//OH43ae/H99ae 2-1-1 ) - 1 (FS8A(S):S09-362-1-B///GUAT209:S13//OH43ae/H99ae 2-1-1 ) - 1 (FS8A(S):S09-362-1-B///GUAT209:S13//OH43ae/H99ae 2-1-1 ) - 1 (FS8A(S):S09-362-1-B///GUAT209:S13//OH43ae/H99ae 2-1-1 ) - 1 (FS8A(S):S09-362-1-B///GUAT209:S13//OH43ae/H99ae 2-1-1 ) - 1 (FS8A(S):S09-362-1-B///GUAT209:S13//OH43ae/H99ae 2-1-1 ) - 1 (FS8A(S):S09-362-1-B///GUAT209:S13//OH43ae/H99ae 2-1-1 ) - 1 (FS8A(S):S09-362-1-B///GUAT209:S13//OH43ae/H99ae 2-1-1 ) - 1 (CUBA164:S2012-444-1-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 (CUBA164:S2012-444-1-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 (CUBA164:S2012-444-1-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 (CUBA164:S2012-444-1-B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GUAT209:S13//OH43ae/H99ae Hybrid Evaluation Forty experimental entries including a normal check and two commercial amylomaize checks with 37 GEM x GEM hybrids were evaluated in Iowa and Kirsville, MO (Table 4 and Table 5). Yield data in Iowa again showed that many GEM x GEM materials out yielded the commercial check varietieis. When compared with the IA yield trial conducted in 2008, there appears to be three experimental hybrids that performed consistently well these include: FS8B T:N11a-87-1-B-B////DKXL370:N11a20-31-1-B-B-SIB///GEMS-67 X CUBA164:S2012-966-1-B-B////AR16035:S02-615-1-B-B///GEMS-67 DXKL370:N11a20-322-1-B-B////DKXL370:N11a20-31-1-B-B-SIB///GEMS-67 X CHIS775:S1911b-120-1-B-B-B////AR16035:S02-615-1-B-B///GEMS-67 DKXL370:N11a20-199-2-B-B-B////DKXL370:N11a20-31-1-B-B-SIB///GEMS-67 X CUBA164:S2012-966-1-B-B////AR16035:S02-615-1-B-B///GEMS-67 Yield data from Missouri was collected this year but suffered from excessive moisture. The second block in particular was in a location that was not well drained. The ANOVA did not indicate a significant effect because of this block. An ANOVA was performed using a one Rep the first block of MO data and as a second rep the mean of the IA data which revealed a significant effect. Although this might be an unconvential approach it did indicate that there was some consistency in performance in IA and MO. Average performance of inbreds are shown in Table 6. It appears that DKXL370:N11a20-199-2-B-BB////DKXL370:N11a20-31-1-B-B-SIB///GEMS-67 and CUBA164:S2012-966-1-B-B////AR16035:S02-6151-B-B///GEMS-67 might serve as good testers for future hybrid evaluations. Special attention should be given to these lines through starch analysis and SSR marker genotyping to ensure presence of the high amylose modifier gene in these lines. Table 4. Hybrid Evaluation:IA Table 5. Hybrid Evaluation: MO Table 6. General combining ability of lines from IA yield trial N amylomaize VII ss parent line UR10001:S1813‐257‐1///GUAT209:S13//GEMS‐67 CUBA164:S1511b‐325‐1‐B‐B////AR16035:S02‐615‐1‐B‐B///GUAT209:S13//GEMS‐67 FS8A(S):S09‐362‐1‐B///GUAT209:S13//GEMS‐67 2‐1‐1 2011‐01_SE32_S17_F2S4_9148‐Blk22/00‐sib///GUAT209:S13//GEMS‐67 AR16035:S02‐615‐1‐B‐B///GUAT209:S13//GEMS‐67 UR11003:S0302‐1011‐1‐B‐B////(CUBA164:S2012‐444‐1‐B///GUAT209:S13//GEMS‐67 CHIS775:S1911b‐120‐1‐B‐B‐B////AR16035:S02‐615‐1‐B‐B///GUAT209:S13//GEMS‐67 CHIS740:S1411a‐783‐2‐B‐B////AR16035:S02‐615‐1‐B‐B///GUAT209:S13//GEMS‐67 2011‐01_SE32_S17_F2S4_9148‐Blk22/00‐sib///GUAT209:S13//GEMS‐67 CUBA164:S2012‐966‐1‐B‐B////AR16035:S02‐615‐1‐B‐B///GUAT209:S13//GEMS‐67 CUBA164:S2012‐966‐1‐B///GUAT209:S13//GEMS‐67 CUBA164:S2012‐444‐1‐B‐B‐sib////AR16035:S02‐615‐1‐B‐B///GUAT209:S13//GEMS‐67 CUBA164:S2012‐444‐1‐B///GUAT209:S13//GEMS‐67 2 3 1 8 1 1 6 1 5 8 2 1 1 N amylomaize VII non‐stiff stalk line DKXL370:N11a20‐322‐B///GUAT209:S13//GEMS‐67 AR03056:N09‐182‐1‐B‐B‐B////DKXL370:N11a20‐31‐1‐B‐B‐SIB///GUAT209:S13//GEMS‐67 DK212T:N11a12‐191‐1‐B‐B////DKXL370:N11a20‐31‐1‐B‐B‐SIB///GUAT209:S13//GEMS‐67 FS8B T:N11a‐322‐1‐B‐B /// GUAT209:S13//GEMS‐67 AR03056:N09‐191‐1‐B‐B‐B////DKXL370:N11a20‐31‐1‐B‐B‐SIB///GUAT209:S13//GEMS‐67 AR03056:N09‐24‐1‐B‐B‐B////DKXL370:N11a20‐31‐1‐B‐B‐SIB///GUAT209:S13//GEMS‐67 SCR01:N1310‐358‐1‐B‐B///GUAT209:S13//GEMS‐67 DKXL370:N11a20‐31‐1‐B‐B‐SIB///GUAT209:S13//GEMS‐67 CH05015:N1502‐86‐1‐B‐B////DKXL370:N11a20‐31‐1‐B‐B‐SIB///GUAT209:S13//GEMS‐67 FS8B(T):N11a‐87‐1‐B‐B////DKXL370:N11a20‐31‐1‐B‐B‐SIB///GUAT209:S13//GEMS‐67 SCR01:N1310‐358‐1‐B‐B///GUAT209:S13//GEMS‐67 CH05015:N1204‐57‐1‐B‐B////DKXL370:N11a20‐31‐1‐B‐B‐SIB///GUAT209:S13//GEMS‐67 DKXL370:N11a20‐199‐2‐B‐B‐B /// GUAT209:S13//GEMS‐67 UR13085:N0215‐14‐1‐B///GUAT209:S13//GEMS‐67 DREP150:N2011d‐624‐1‐B‐B////DKXL370:N11a20‐31‐1‐B‐B‐SIB///GUAT209:S13//GEMS‐67 CH05015:N15‐3‐1‐B‐B///GUAT209:S13//GEMS‐67 DKXL370:N11a20‐36‐2‐B///GUAT209:S13//GEMS‐67 DXKL370:N11a20‐322‐1‐B‐B////DKXL370:N11a20‐31‐1‐B‐B‐SIB///GUAT209:S13//GEMS‐67 BARBGP2:N08a18‐332‐1‐B‐B////DKXL370:N11a20‐31‐1‐B‐B‐SIB///GUAT209:S13//GEMS‐67 DKXL370:N11a20‐199‐2‐B‐B‐B////DKXL370:N11a20‐31‐1‐B‐B‐SIB///GUAT209:S13//GEMS‐67 2 2 1 2 2 1 6 2 1 2 2 2 1 3 1 1 1 2 1 2 Yield bu/ac 79.0 102.4 105.0 108.4 111.2 118.3 120.3 122.6 123.1 124.1 135.6 138.2 149.0 MOIST % 29.1 28.4 27.8 28.6 28.6 23.3 28.9 26.7 29.1 28.1 29.1 26.5 26.7 TWT Kg 47.3 46.8 47.3 48.2 47.3 47.2 48.0 47.7 48.0 48.1 48.3 49.6 48.4 STAND SKLDG RTLDG 50.3 50.3 49.0 49.7 45.5 49.0 47.4 57.5 56.2 53.5 51.5 41.5 55.5 2.0 0.7 2.0 1.4 1.0 0.0 1.5 1.5 1.8 1.8 1.0 2.0 1.0 0.3 0.3 0.0 0.6 0.0 0.0 0.1 13.0 0.8 0.4 0.0 0.0 2.5 Yield bu/ac 79.0 92.6 94.3 95.9 105.4 108.8 109.8 116.6 120.0 122.4 122.4 123.8 125.3 127.8 128.3 129.0 129.5 131.9 138.2 148.9 MOIST % 29.1 28.2 30.0 28.1 29.9 30.6 27.1 28.0 29.9 28.7 28.7 28.5 26.1 28.5 29.2 29.2 29.4 28.3 26.5 29.6 TWT Kg 47.3 47.5 46.7 47.0 46.4 46.1 47.2 49.4 48.9 48.6 48.6 48.0 48.3 49.0 47.9 47.9 48.9 48.1 49.6 49.4 STAND SKLDG RTLDG 50.3 51.3 28.0 50.3 52.0 41.5 49.1 56.8 53.5 49.8 49.8 51.5 51.0 51.0 50.5 53.5 60.5 56.3 41.5 56.5 2.0 2.8 2.5 1.3 0.0 1.5 1.8 0.8 2.0 1.3 1.3 2.5 1.5 0.3 1.0 2.0 0.0 2.0 2.0 1.8 0.3 1.0 0.0 0.0 0.0 0.0 2.5 0.5 0.5 0.0 0.0 1.5 1.0 0.3 1.0 0.0 0.0 0.8 0.0 0.0 SSR genotyping of GEM lines used in the developomaize VII lines This past sping and summer, a great deal of time and effort, was put toward setting up a marker lab at Truman for evaluating the feasibility of using marker assisted selection from data collected by Yusheng Wu as part of his theisis dissertations at SDSU under the guidance of Don Auger. We have begun by screening approximately 37 GEM releases used in our program as recipient lines for amylomaize VII line development. Several of these markers were used in the mapping of the modifier by Yusheng and are currently being used to genotype GEM germplasm. Avinash Karn at Truman identified several other markers from the Maize Genetic Data Base that appear to be even more closely linked to sbe1 that are being used as well. It is our goal to identify polymorphism among the markers shown in Figure 2 for these 37 GEM releases. Upon completion a data base will allow us to examine previoulsly selected material and determine if cosegregation of these markers with amylose has been occurring within our breeding material. If so, marker assisted selection may very well help to excellerate the selection process. Figure 2. SSR markers near sbe1 residing in 5.03 that is believed to serve as the major high amylose modifying gene from GEMS-0067. 0.5 cM 3 cM GEMN-0117 GEMS-0118 GEMN-0135 GEMN-0137 GEMN-0140 GEMS-0085 GEMS-0086 GEMN-0087 GEMS-0091 GEMN-0097 GEMN-0110 GEMN-0111 GEMN-0117 GEMS-0118 GEMN-0140 GEMN-0140 GEMN-0144 GEMS-0146 GEMS-0149 GEMN-0174 GEMN-0151 GEMN-0154 GEMN-0156 GEMS-0175 GEMS-0180 GEMN-0198 GEMN-0187 GEMN-0191 GEMN-0190 GEMN-0193 GEMN-0197 1 2 1 1 1 1 1 1 1 1 2 3 ? 2 1 1 1 1 2 2 2 2 2 2 2 2 3 P2 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 2 0 0 2 2 17 2 -B -B B ib b -B -B -B B B-S B Si -B -B -B -B BB-B SI B-B -B B -B -B B1-B BB-B -B B1-B -B 00 B02 B0 1 1 01 01 B 21-0 1-0 -0 -0 100 00 3 0 3 0 1 9 7 0 3 0 8 8 1 5 -0 -0 02 82 87-7 -0 -5 -2 24 -8 -3 62 a1 08 1a 25 25 13 -0 -3 16 02 a08 41 19 05 18 09 09 03 18 11 :N :N S1 :S :S :N :S :S :N 0: P2 ):N 09 89 01 56 4 S) S) T) 2 T G 0 0 ( ( ( 0 ( 7 T 01 10 IS 03 8A 8B RB 8B 8B UA FS FS FS G UR UR AR CH FS BA 2 GEMN-0144 GEMS-0146 GEMS-0149 GEMN-0174 GEMN-0151 GEMN-0154 GEMN-0156 GEMS-0175 GEMS-0180 GEMN-0191 GEMN-0190 P2 21 22 23 24 25 26 27 28 29 2 1 2 1 1 0 0 0 1 2 2 1 2 1 0 0 2 1 2 3 4 3 3 1 1 1 3 1 3 2 1 2 1 18 2 1 19 1 1 20 2 0 2 -B -B -B -7 41 5 B 7 B B BB B B B3_ -B B-B BB-B BBB-B 2S B-B 3B1-B BB-B 11F -B 12100 -B 00 01 00 01 N1 300 400 00 01 -0 10 0 0 2 0 7 1 3 8 0 3 6 3 -0 5 0 03 dL3 18 14 84 -0 -1 00 28 050-2 11 8-0 04 KX 02 62 41 21 20 20 81 14 12 03 _D :N 21 S0 N0 S0 :N :N :S S2 97 7: 5: 0: :N 50 4: p3 15 03 2/ 1 7 6 2 1 0 0 0 0 0 6 0 G 0 02 05 EP 11 05 R 51 52 I9 31 DI CH DR UR 95 SC BR BR M NE UR 2 0 2 2 P2 2 3 4 5 6 7 8 9 10 11 12 13 14 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 1 1 2 1 1 3 3 3 1 1 3 3 3 0 2 2 3 0 2 3 2 2 1 1 2 1 2 1 2 2 1 1 GEMN-0193 GEMN-0197 30 31 32 GEMN-0197 30 GEMN-0193 29 GEMN-0190 26 GEMN-0191 25 GEMN-0187 24 GEMN-0198 23 GEMS-0180 22 GEMS-0175 21 GEMN-0156 20 GEMN-0154 19 GEMN-0151 18 GEMN-0174 17 GEMS-0067 P1 P2 GEMS-0142 20 P1 GEMS-0067 16 H99 ae 19 H99 ae 18 GEMS-0149 15 GEMS-0146 14 GEMN-0140 13 GEMN-0137 GEMN-0135 GEMS-0118 GEMN-0117 12 GEMN-0144 1 P1 GEMN-0111 11 GEMS-0142 GEMN-0097 10 GEMN-0140 GEMS-0091 9 GEMN-0137 GEMN-0087 8 GEMN-0135 GEMS-0086 7 GEMS-0118 GEMS-0085 6 GEMN-0117 GEMN-0083 5 GEMN-0110 GEMN-0081 4 GEMN-0111 GEMS-0079 3 GEMN-0110 GEMN-0097 GEMS-0091 GEMN-0087 GEMS-0086 GEMS-0085 GEMN-0083 GEMN-0081 GEMS-0078 2 GEMS-0149 GEMN-0083 1 GEMS-0079 GEMS-0067 1 GEMS-0146 GEMN-0081 1 GEMS-0078 H99 ae polymorph H99 vs GEMS-67? P2 GEMN-0144 GEMN-0111 1 GEM 197 17 GEMN-0110 16 GEM 144 15 GEMN-0097 14 GEM 91 13 GEMS-0091 12 GEM 78 11 GEMN-0087 10 GEM 149 9 GEMS-0086 8 GEM 85 7 GEMS-0085 6 GEM 86 5 GEMN-0083 4 GEM 54 score 3 GEMN-0081 Y 2 GEM 87 umc2161 1 GEMS-0079 score P2 GEMS-0142 umc1870 P1 GEM 137 Y GEMS-0079 score GEMS-0078 score H99 N GEMS-0078 umc1373 GEMS-0067 score GEMS-0067 Marker Y H99 ae polymorph H99 vs GEMS-67? Approx. distance from sbe1 umc1591 GEMS-0067 polymorph H99 vs GEMS-67? Marker Approx. distance from sbe1 6 cM GEMS-0067 umc1429 polymorph H99 vs GEMS67? Marker Approx. distance from sbe1 P1 H99 ae polymorph H99 vs GEMS67? 0.6 cM Marker Approx. distance from sbe1 0.6 cM Marker Approx. distance from sbe1 Table 5. SSR fragments and scoring of markers linked to sbe1 in Bin 5.03 31 1 ? 2 32 1 1 ? 1 33 33 1 34 35 2 GEMS-0115 GEMS-0092 PI 642763 PI 642763 GEMS-0113 GEMS-0092 score 1 1 1 1 1 1 1 1 1 1 1 1 PI 642763 Y GEMS-0115 umc1591 1 GEMS-0092 Score GEMS-0113 N GEMS-0115 GEMN-0059 umc1371 GEMN-0059 2 GEMS-0113 GEMN-0099 2 GEMN-0099 2 GEMN-0059 GEMS-0093 1 GEMS-0093 2 GEMN-0099 GEMN-0090 1 GEMN-0090 2 GEMS-0093 GEMN-0089 2 GEMN-0089 2 GEMN-0090 GEMN-0088 1 GEMN-0088 1 GEMN-0089 GEMN-0071 2 GEMN-0071 Y GEMN-0088 GEMS-0063 umc1397 GEMS-0063 Score GEMN-0071 GEMN-0088 GEMN-0089 GEMN-0090 GEMS-0093 GEMN-0099 GEMN-0059 GEMS-0113 GEMS-0115 GEMS-0092 PI 642763 1 GEMS-0063 2 GEMN-0090 Y GEMN-0071 GEMN-0090 polymorph H99 vs GEMS-67? umc1429 1 GEMN-0090 Marker Approx. distance from sbe1 score GEMS-0063 polymorph H99 vs GEMS-67? 1 polymorph H99 vs GEMS67? Marker Approx. distance from sbe1 umc1397 GEMN-0090 polymorph H99 vs GEMS-67? 6 cM score Marker Approx. distance from sbe1 0.6 cM Marker Approx. distance from sbe1 16 Y 150 bp 100 bp 1 2 2 1 2 2 1 2 2 2 2 2 1 1 2 1 1 1 1 2 2 2 2 2 1 1 1 2 1 1 1 2 1 1 1 3 1 1 3 2 2 2 GEMN-0197 GEMN-0140 15 GEMN-0193 GEMN-0137 14 GEMN-0190 GEMN-0135 13 GEMN-0191 GEMS-0118 12 GEMN-0187 GEMN-0117 11 GEMN-0198 GEMN-0111 10 GEMS-0180 GEMN-0110 9 GEMS-0175 GEMN-0097 8 GEMN-0156 GEMS-0091 7 GEMN-0154 GEMN-0087 6 GEMN-0151 GEMS-0086 5 GEMN-0174 GEMS-0085 4 GEMS-0149 GEMN-0083 3 GEMS-0146 GEMN-0081 2 GEMN-0144 GEMS-0079 1 GEMS-0142 GEMS-0078 P2 GEMS-0067 GEMS-0067 P1 H99 ae H99 ae polymorph H99 vs GEMS-67? Marker Approx. distance from sbe1 Table 5. (Cont’d) Fragment and scoring of markers linked to sbe1 in Bin 5.03 1 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 Scanning Electron Microscopy (SEM) of amylomaize VII starch granules in situ Truman State University has an electron microscope capable of producing detailed images of endopersm components. There is previous data suggesting that the distribution of granules in the endosperm can influence properties such as size and amylose content. We therefore, collected some images of eight amylomaize VII inbreds from 2008 and are listed in Figure 1 along with whole kernel images of each. Kernels where cut and prepared on stubs for SEM. Certain locations such as the crown, mid-section and specific distances from the aluerone layer were used to collect images. An example of images from one Figure 3. Amylomaize VII lines selected of the genoytpes (2011for SEM examination of granual 01_SE32_S17_F2S4_9148shape and size distribution Blk22/00-sib///GEMS-67). throughout the endoperm Similar images were collected from duplicate kernels to be used as replications. Our next goal is to now systematically quantify characteristics such as granule density, shape, size, and any other charactersitcs that might influence the expression of high amylase genes. This data will likely indicate the influence of endosperm proteins and texture on the starch. This information will likely be important to consider especially regarding 1)starch yield 2) starch charactersitcs and 3) kernel integrity that could influence kernel rot and handling damage. Figure 4. An example of one genotype (of a total of eight amylomaize VII GEM lines) used to collect images systematically taken from various regions of the endosperm. Development of GEM lines possessing starch-synthesis double-mutants which are also segregating the high amylose modifier (sbe1:gm67) There have been a number of studies regarding the interaction of various genes influencing starch synthesis. Many patents exist on specialty applications of these such as with the genotype ae wx (waxy). An example includes Patent # 5009911 which describes the use of ae wx atarch as a thickener in foodstuffs having a pH of 5 or lower which could be used to replace cross linked modified waxy starches. One of the main limitations of large scale production of these genotypes especially ae wx is the collapsing of the kernel resulting in low starch yield and high susceptibility to kernel rots. Our ojective is to investigate the behavior of these gene in genetic variable GEM material. Additionally, the influence of sbe1:gm67 will be investigated however genotyping via SSR markers might be required since it is not yet known what phenotypic effect this modifier will have. Below is a list of the material we are currently examining (Table 6). Examples of ears believed to mostly be homozygous for ae and wx are shonw in Fig 5 A and B. Ears are highly variable in kernel appearance and susceptibily to ear rots. The material will continue to be inbred and assessed for starch yield and properties. Table 6. Pedigrees of ae wx germplasm developed from GEM germplasm in an effort to use the exotic germplasm to improve grain quality traits including starch yield and kernel fungal pathogen resistance. Waxy GEMS lines converted by National Starch and Chemical Co. indicated by green font. 08-130-2 08-132-1 08-134-1 08-138-1 08-141-10 08-146-1 08-148-1 08-151-1 08-154-1 DK844:S1601-3-2-B GF0304/GEMS-67 FS8A(S):S09-362-1-B GF0305///// BARBGP2:NO8a18-332-1-B-B////(CH05015:N15-3-1-BB///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 AR16035:S02-615-1-B GF0301///// DKB844:S1601-3-2-B-B-B////(FS8A(S):S09-362-1B///GUAT209:S13//OH43ae/H99ae 2-1-1 ) - 1 FS8B(T):N1802-525-2-B GM0306///// UR11003:S0302-1011-1-B-B////(CUBA164:S2012-444-1B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 Cuba164:S2012-966-1-B GF0303///// BARBGP2:NO8a18-332-1-B-B////(CH05015:N15-3-1-BB///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 AR16035:S02-615-1-B GF0301///// CUBA164:S1511b-325-1-B-B////(FS8A(S):S09-362-1B///GUAT209:S13//OH43ae/H99ae 2-1-1 ) - 1 Cuba164:S2012-966-1-B GF0303///// CHRIS775:S1911b-120-1-B-B-B////(CUBA164:S2012-444-1B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 DK844:S1601-3-2-B GF0304///// CUBA164:S2012-966-1-B-B////(FS8A(S):S09-362-1B///GUAT209:S13//OH43ae/H99ae 2-1-1 ) - 1 FS8A(S):S09-362-1-B GF0305///// BARBGP2:NO8a18-332-1-B-B////(FS8A(S):S09-362-1B///GUAT209:S13//OH43ae/H99ae 2-1-1 ) - 1 ae / wx ae / wx ae / wx ae / wx ae / wx ae / wx ae / wx ae / wx ae / wx 08-157-1 08-158-1 08-160-1 08-160-5 08-164-1 08-166-2 08-168-1 08-174-1 08-176-5 08-180-4 08-182-1 08-184-5 08-190-6 08-192-10 08-194-2 08-196-7 08-202-10 08-204-7 08-208-2 SCR01:N1310-509-1-B GM0309/GEMS-67 FS8A(S):S09-362-1-B GF0305///// CHRIS775:S1911b-120-1-B-B-B////(CUBA164:S2012-444-1B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 FS8A(S):S09-362-1-B GF0305///// AR03056:N09-182-1-B-B-B////(CH05015:N15-3-1-BB///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 FS8A(S):S09-362-1-B GF0305///// AR03056:N09-182-1-B-B-B////(CH05015:N15-3-1-BB///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 FS8A(S):S09-362-1-B GF0305/GEMS-67 DK844:S1601-3-2-B GF0304///// DK212T:N11a12-191-1-B-B////(CH05015:N15-3-1-BB///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 Cuba164:S2012-966-1-B GF0303///// CH05015:N1204-57-1-B-B////(CH05015:N15-3-1-BB///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 DKXL370:N11a20-36-2-BGM0308///// CUBA164:S2012-444-1-B-B-sib////(CUBA164:S2012-444-1B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 Cuba164:S2012-966-1-B GF0303///// DKXL370:N11a20-199-2-B-B-B////(CH05015:N15-3-1-BB///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 Cuba164:S2012-966-1-B GF0303/GEMS-67 Cuba164:S2012-966-1-B GF0303///// AR03056:N09-250-1-B-B-B////(CH05015:N15-3-1-BB///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 Cuba164:S2012-966-1-B GF0303///// FS8B(T):N11a-110-1-B-B////(CH05015:N15-3-1-BB///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 DK844:S1601-3-2-BGF0304///// DKB844:S1601-73-1-B-B-B////(FS8A(S):S09-362-1B///GUAT209:S13//OH43ae/H99ae 2-1-1 ) - 1 DKXL370:N11a20-36-2-B GM0308///// CHIS740:S1411a-783-2-B-B////(CUBA164:S2012-444-1B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 DKXL370:N11a20-36-2-B GM0308/GEMS-67 DKXL370:N11a20-36-2-B GM0308///// FS8B(T):N11a-87-1-B-B////(CH05015:N15-3-1-BB///GUAT209:S13//OH43ae/H99ae 6-2-2-1) - 1 UR13085:N0215-14-1-B GM0310///// UR11003:S0302-1011-1-B-B////(CUBA164:S2012-444-1B///GUAT209:S13//OH43ae/H99ae 6-2-1-1) - 1 SCR01:N1310-509-1-B GM0309///// UR11003:S0302-1011-1-B-B////(FS8A(S UR13085:N0215-14-1-B GM0310/GEMS-67 ae / wx ae / wx ae / wx ae / wx ae / wx ae / wx ae / wx ae / wx ae / wx ae / wx ae / wx ae / wx ae / wx ae / wx ae / wx ae / wx ae / wx ae / wx ae / wx Figure 5. Examples of double mutant (ae wx) ears developed from waxy GEM line from National Starch crossed with ae lines from Truman that are likely segregating a high amylose modifier gene (sbe1:gm67). Ears showing susceptibility rot kernel rot (A) and many showing improved kernel quality and disease resistance (B).