Exam 2 Review Outline Atoms to Ecosystems, Winter 2009 I. Mitosis & Cytokinesis Terminology: Chromosome, Sister Chromatid, Centromere, Kinetochore • Cell Cycle: Interphase (G1, S and G2)Æ Mitotic Phase (Mitosis and Cytokinesis), Role of Checkpoints • Five Stages of Mitosis and major events of each (+ role of spindle) • Cytokinesis: animals (cleavage furrow) vs plants (cell plate) • Recognize cells in various stages II. Meiosis Terminology: genes, asexual vs sexual reproduction (genetic consequences), somatic cell, gamete, homologous chromosome, autosome, sex chromosome, diploid, haploid, zygote, synapsis, crossover • Lifecyles: Human life cycle- ploidy state, role of meiosis vs fertilization, chromosome number • Stages of Meiosis I and Meiosis II- major events (especially as contrasted with mitosis) • Recognize cells in various stages III. Transcription and Translation • DNA Structure: anti-parallel, significance of 3’ and 5’ ends, complimentary base pairing • DNA Replication: general mechanism and role of helicase, primase, primer, DNA polymerase, ligase. Define and explain leading and lagging strands • Transcription: DNA vs RNA structure, promoter, RNA polymerase (builds 5’Æ3’), 3 steps of transcription (know basic mechanism) transcription factors, Transcription Initiation Complex, Terminator Sequence, Prokaryotic vs Eukaryotic transcription • RNA Processing: 5’ Cap, 3’ poly(A), introns, exons, spliceosomes, possible benefits of RNA splicing/Introns • Translation: the genetic code (table provided if needed), tRNAs (structure and function), anticodons, role of aminoactyl-tRNA synthetase, ribosome structure (2 subunits, 3 binding sites), 3 steps of translation (know basic mechanism) • Effects of Mutations: Substitutions (silent and otherwise), Insertions & Deletions, Frameshift Mutations IV. Mendelian Genetics (and some exceptions) Terminology: homozygous, heterozygous, genotype, phenotype, dominant, recessive, codominance, incomplete dominance, P, F1, and F2 generation, Punnett Square, monohybrid vs dihybrid, epistasis, polygenic inheritance • History: Mendel, Mendel’s model organism, blended inheritance • Implications: Segregation, Independent Assortment, calculating probabilities • Explain and provide examples of major exceptions including codominance, incomplete dominance, epistasis, pleiotropy, and polygenic inheritance VI. Chromosomal Inheritance Terminology: wild-type, mutant phenotype, sex-linked genes, Barr body, linked genes, aneuploidy, monosomic, trisomic, polyploidy • History: Morgan, Morgan’s model organism, implications • Inheritance: Inheritance patterns for sex-linked genes, inheritance patterns of linked genes, linkage mapping, chromosomal alterations (deletions, duplication, inversions & translocations) VII. Microbial Genetics • Terms: Binary Fission, plasmid (F and R), Operator, Repressor, Transposase, Transposon (structure and function), Operons (Structure and Function of trp (repressible) and lac/ara (inducible) operons), bacteriophage, lytic cycle, lysogenic cycle • Types of Recombination in bacteria: Transformation, Transduction, Conjugation (know definition and mechanism) VIII. Chemical Equilibrium (C-Ch. 17 & C-Ch. 20 section 20.4) • Understand the concept of equilibrium and ability to discuss on the molecular level • Ability to use kinetics to explain the concept of equilibrium and discuss the equilibrium constant • Ability to determine the equilibrium constant expression given a chemical reaction • Ability to determine whether the reactants or products are favored given an equilibrium constant value • Ability to calculate the equilibrium constant (Kp and Kc) • Ability to predict the direction of a reaction given initial concentrations (Q) • Ability to calculate equilibrium concentrations and equilibrium constant given a limited amount of information (ICE tables) • Ability to use Le Chatelier’s Principle to determine how a stress will affect a reaction in equilibrium (temperature, concentration, pressure, volume, catalyst) • Understand how the composition of a reaction (Q) mixture affects the Free Energy Change (ΔG) • Understand the relationship between Free Energy change (ΔG) and equilibrium constants and ability to calculate an equilibrium constant from free energy tables.