Classification Taxonomy Cognitive Learning Systems, Inc © 2008 Cognitive Learning Systems, Inc © 2008 Images courtesy: http://imaes.fws.gov ;http://www/glerl.noaa.gov; USDA-NRCS PLANTS Database / Herman, D.E., et al. 1996. North Dakota tree handbook. USDA NRCS ND State Soil Conservation Committee; NDSU Extension and Western Area Power Administration, Bismarck; www. Mbr-pwr.usgs.gov; afsc.noaa.gov; and National Agricultural Library, Agricultural Research Service, U. S. Department of Agriculture." Organisms Classification What is classification? Why classify? Cognitive Learning Systems, Inc © 2008 Classification Systems The concept of classifying organisms dates back to 300 B.C. Over the course of many centuries, different classification systems were used. It was Carolus Linnaeus in the 18th century that is credited with establishing the basic system of classification that we still use today. He developed a system that classified organisms based on similarities and differences in physical features and characteristics of organisms. His system began by looking at individual organisms and grouping the organisms that appeared similar into a category called species. Different species had different characteristics. Cognitive Learning Systems, Inc © 2008 Classification Systems Linneaus also noticed that there were species that shared some characteristics. Species that shared some common characteristics were grouped together in a category called genus. He continued this level of classification, creating larger and larger groups that were defined by shared traits. Examples of these larger groups were orders, classes and kingdoms. Cognitive Learning Systems, Inc © 2008 Classification Systems Based on new research and new information, many scientists today use a system similar to the one proposed by Linnaeus. One of the most frequently used systems has eight categories or groups. The term taxonomy is used when classifying organisms based on this system. The eight categories are: Domain Kingdom Phylum Class Order Family Genus Species Cognitive Learning Systems, Inc © 2008 How is the taxonomic system organized? The taxonomic system is based on physical phenotypes and characteristics. Although Linnaeus created it by looking at individual organisms, it is sometimes easier to understand by starting with the larger categories or taxa. Domain Organisms are grouped into large categories or taxa called domains. Kingdom Kingdom Domains are divided into kingdoms. Phylum Phylum Kingdoms are divided into phyla. Phyla are divided into classes. Classes are divided into orders. Orders are divided into families. class order class order family family genus Families are divided into genera (genus). genus species Genera are divided into species. Cognitive Learning Systems, Inc © 2008 species How is the taxonomic system organized? 1. Does the diagram show all of the domains, kingdoms, phyla, etc. of the taxonomic system? Kingdom 2. Does each category (taxa) of the taxonomic system have only two options? 3. Are there always the same number of taxa in each level of the taxonomic system? Domain Kingdom Phylum class order Phylum class order family family genus genus species Cognitive Learning Systems, Inc © 2008 species How is the taxonomic system organized? 1. Are there more species of organisms than kingdoms? Domain Kingdom Kingdom 2. Does each taxa represent smaller and smaller groupings of similarities? 3. Would you find more differences than similarities in organisms from higher levels of taxa as compared to lower levels? Phylum class order class order family 4. Is the taxonomic system a HIERARCHAL system? Phylum family genus genus species Cognitive Learning Systems, Inc © 2008 species Most scientists recognize THREE domains of organisms. Bacteria Archaea Eukaryota Unicellular prokaryotes Unicellular prokaryotes that tend to live in HARSH conditions where other organisms CANNOT survive Unicellular and multicellular eukaryotes Microscopic Widespread, living in almost every environment, including in the gut of animals Microscopic Includes protists, algae, plants, fungi and animals Range from microscopic to macroscopic. Cognitive Learning Systems, Inc © 2008 Images courtesy: http://imaes.fws.gov ;http://phil.cdc.gov and www.nasa.gov Domains Domain: Bacteria Classification of bacteria Unicellular prokaryotes Some are grouped by shape. rods cocci (circular) aerobic- require oxygen to grow anaerobic- require NO oxygen for growth Some are classified by similarity in DNA. Some are classified by differences in their chemical make-up. Cognitive Learning Systems, Inc © 2008 Images courtesy:;http://phil.cdc.gov Some are grouped by conditions under which they grow. Domain: Bacteria Beneficial Pathogenic Some bacteria help ferment wine and cheese. Some staphylococcus bacteria produce skin infections. Some bacteria help produce yogurt. Some bacteria help break up waste at water and sewage treatment plants. Some bacteria produce antibiotics such as streptomycin. Some streptococcus bacteria can cause strep throat. E.Coli and salmonella bacteria can cause food poisoning. Some bacteria live in our gut and breakdown food. Cognitive Learning Systems, Inc © 2008 Domain: Archaea Many live in harsh conditions in which other organisms would not survive such as hot springs, acidic water or high salinity water. Not as much is known about these organisms as they were “discovered” as a separate domain of organisms about 25-30 years ago. They are classified by differences in DNA and RNA structure and by the environment in which they live. It is thought that they may have been some of the earliest organisms on the Earth. Cognitive Learning Systems, Inc © 2008 Image courtesy: www.nasa.gov Unicellular prokaryotes Check Understanding 1. One taxonomic system used by scientists begins by classifying organisms into domains. How is the rest of the taxonomic system organized? 2. Describe how organisms in the Bacteria Domain are different from organisms in the Eukaryota Domain. Cognitive Learning Systems, Inc © 2008 Classification Eukaryota Domain: Fungi and Plant Kingdoms Cognitive Learning Systems, Inc © 2008 What Can You Recall? 1. Where would you find more differences than similarities in two organisms? In two organisms that share the same phylum or from two organisms that share the same genus? 2. How are the organisms in the Bacteria domain similar to the organisms in the Archaea domain? How are they different? Cognitive Learning Systems, Inc © 2008 Domain: Eukaryota Characteristics found in ALL Eukaryotes Characteristics found in SOME Eukaryotic Cells Nucleus Flagella- a “tail” or “thread” that helps move the cell DNA is found inside the nucleus DNA is divided into pieces called chromosomes Contain a cytoskeleton Cell wall- a rigid structure outside the cell membrane. Chloroplasts- organelles that contain pigments needed for photosynthesis Contain other organelles Most eukaryotic cells divide by mitosis Cognitive Learning Systems, Inc © 2008 nucleus Domain: Eukaryota One way of classifying the organisms within the Eukaryota domain is by grouping them into 4 kingdoms Fungi Plants Animals Protists Cognitive Learning Systems, Inc © 2008 Examples Yeast, mold, mildew and many more Common characteristics Heterotrophic: They obtain nutrients by consuming other organisms. They do NOT have chloroplasts and CANNOT make their own food. They secrete digestive enzymes into the environment to break down organic matter. They then absorb the nutrients. They have cell walls made of chitin. This is a different material from plant or bacterial cell walls. Fungi can be unicellular (yeast) or multicellular (mushrooms). Multicellular fungi have a filamentous structure. Cognitive Learning Systems, Inc © 2008 Images courtesy: http://phil.cdc.gov and "National Agricultural Library, Agricultural Research Service, U. S. Department of Agriculture." Fungi Fungi Roles Symbiosis with plants Other Uses Most plants have fungi which grow on their roots. Yeast are used in baking and fermenting. Fungi help to soak up water and nutrients and provide the nutrients to the plants. Mushrooms and truffles are used in/as foods. The plant provides the fungi with sugar that it made during photosynthesis. Penicillin is produced by a mold. Many plants would not be able to sustain themselves without their fungal partner. Cognitive Learning Systems, Inc © 2008 Examples Mosses, worts, ferns, conifers, flowering plants Common characteristics Plants are photoautotrophic. They produce their own food utilizing light and carbon dioxide Plants have cell walls made of cellulose. This is a different materials from fungi or bacterial cell walls. Plants contain chloroplasts filled with chlorophyll and other pigments needed for photosynthesis. Plants are multicellular. Cognitive Learning Systems, Inc © 2008 Image courtesy: SDA-NRCS PLANTS Database / Herman, D.E., et al. 1996. North Dakota tree handbook. USDA NRCS ND State Soil Conservation Committee; NDSU Extension and Western Area Power Administration, Bismarck. Plants Plants Plants in the Plant Kingdom can be divided into different groups. In contrast to other kingdoms the next level of classification is sometimes called a DIVISION instead of a phylum. Classification into divisions is based on differences in the structures, methods of reproduction and seed production of plants. Cognitive Learning Systems, Inc © 2008 Classifying Plants Plants Non-vascular plants (seedless) Vascular plants Seedless plants Flowering plants Cognitive Learning Systems, Inc © 2008 Seed plants “Naked seeds” Plants Vascular plants Non-vascular plants They have tubes (xylem and phloem) for carrying water and nutrients. They do NOT have xylem and phloem. Phloem is a system of tubes that carries sugars and other nutrients from the leaves and stems to all other parts of the plant. They have true roots and leaves. They reproduce by either spores or seeds Examples: all plants except mosses and worts They have leaf-like structures. They absorb water directly from the ground. They tend to be small in height because of the difficulty in moving water over long distances. They reproduce by spores Examples: mosses and worts Cognitive Learning Systems, Inc © 2008 Image courtesy: Sheri Hagwood @ USDANRCS PLANTS Database Xylem is a system of tubes that carries water and minerals from the roots to other parts of the plant. They have rhizoids which are similar to roots. Vascular Plants Seedless plants Seed plants They are vascular plants because they have a system of tubes. They are vascular plants because they have a system of tubes. They reproduce using spores. They reproduce using seeds. Examples: ferns, clubmosses, horsetails Examples: gymnosperms and angiosperms (pine trees, flowers, maple trees, evergreens, etc.) Images courtesy: USDA-NRCS PLANTS Database / Herman, D.E., et al. 1996. North Dakota tree handbook. USDA NRCS ND State Soil Conservation Committee; NDSU Extension and Western Area Power Administration, Bismarck,www. Mbr-pwr.usgs.gov; and : Jennifer Anderson @ USDA- NRCS PLANTS Database Cognitive Learning Systems, Inc © 2008 Gymnosperms (Naked seeds) Angiosperms (Flowering plants) Seeds develop on the surface of reproductive structures. For example, seeds develop on the surface of cones in pine trees. Examples: conifers (evergreens and pine trees), cycads, and ginkgos Seeds develop in an ovary and are enclosed within a flower or fruit. Examples: roses, maple trees, tulips Cognitive Learning Systems, Inc © 2008 Images courtesy: USDA-NRCS PLANTS Database / Herman, D.E., et al. 1996. North Dakota tree handbook. USDA NRCS ND State Soil Conservation Committee; NDSU Extension and Western Area Power Administration, Bismarck; Robert H. Mohlenbrock @ USDA-NRCS PLANTS Database / USDA NRCS. 1995. Northeast wetland flora: Field office guide to plant species. Northeast National Technical Center, Chester ; Seed Plants Check Understanding 1. Describe two ways in which fungi and plants are alike. Describe two ways in which fungi and plants are different. 2. Describe two different ways in which plants can be classified. Cognitive Learning Systems, Inc © 2008 Classification: Eukaryota Domain: Animal and Protist Kingdoms Cognitive Learning Systems, Inc © 2008 What Can You Recall? 1. How are plants, fungi, animals and protists all ALIKE? 2. Describe one way in which a non-vascular plant is different from and one way in which it is similar to a vascular plant. 3. Explain how you would classify a pine tree based on the following categories: non-vascular vascular seedless seed flowering non-flowering Cognitive Learning Systems, Inc © 2008 Animal Kingdom Images courtesy:. Photo by Scott Somershoe, USGS. Patuxent Wildlife Research Center" ; http://imaes.fws.gov;and www/asfc.noaa.gov Characteristics Heterotrophic: Animals do NOT make their own food. They must ingest other organisms for nutrients. Multicellular Cognitive Learning Systems, Inc © 2008 Animal Kingdom The animal kingdom can be divided into phyla according to similarities and differences in DNA and RNA, body structures and symmetry. As scientists continue to research organisms, the number of phyla and the organisms in them continue to be modified. The diagram on the next slide shows ONE of the currently accepted divisions of the animal kingdom into phyla. Cognitive Learning Systems, Inc © 2008 Porifera (sponges) Phyla of the Animal Kingdom Cnidaria (hydras, corals, sea anemones) Ctenophora (comb jellies) Platyhelminthes (flatworms) Rotifera (rotifers) Lophophorates Animal Kingdom Nemertea (worms with a proboscis) Mollusca (clams, snails, squids) Annedlia (segmented worms) Nematoda (roundworms) Arthropoda (crustaceans, insects, spiders) Echinodermata (sea stars, sea urchins) Chordata (lancelets, tunicates, vertebrates such as mammals) Cognitive Learning Systems, Inc © 2008 In addition to classification into phyla, scientists also use other groupings to help classify animals. These groupings are not part of the system of taxonomy, but they are a method of classification. One way to classify animals is to divide them into vertebrates and invertebrates. Vertebrates have a backbone. Invertebrates do not. Vertebrates This group only includes animals in the Chordata phyla. This group includes the following CLASSES: mammals, fish, reptiles, amphibians, and birds Cognitive Learning Systems, Inc © 2008 Images courtesy: http://images.fws.gov; Evan H.C. Grant, USGS Patuxent Wildlife Research Center;www.nmfs.noaa.gov Animal Kingdom Animal Kingdom Invertebrates Animals in all other phyla. This group includes jellyfish, spiders, insects, sponges, crustaceans, etc. Octupuses Starfish Insects Jellyfish Snails Sponges Spiders Images courtesy: afsc.noaa.gov; http://images.fws.gov; and www.oceanexplorer.noaa.gov Cognitive Learning Systems, Inc © 2008 Lobsters Worms Animal Kingdom Another way to classify animals is by how they regulate their body temperature. Two groups of animals are ectotherms (cold-blooded animals) and endotherms (warm-blooded animals). Endotherms Have a body temperature regulated by their metabolism and other internal systems for cooling the body. Ectotherms Have a body temperature regulated by their surroundings or environment. “Warm up” by moving into sun on onto warm surfaces. “Cool down” by moving into shady or cool places. Can maintain a steady body temperature even when environmental temperature changes. Examples: Reptiles, fish, amphibians and most invertebrates Examples: Mammals, birds, some fish, a few reptiles, and some insects. Cognitive Learning Systems, Inc © 2008 Protists Originally this kingdom was defined as eukaryotic organisms that did NOT have characteristics of plants, animals or fungi. Research today that focuses on DNA and RNA structure is just beginning to define some of the characteristics of this kingdom. Characteristics Eukaryotes Most require a moist environment to live Some can form colonies Some can photosynthesize Some use structures such as flagella to move Cognitive Learning Systems, Inc © 2008 Images courtesy: http://www/glerl.noaa.gov Most are unicellular. Protists The Protist Kingdom can be divided into phyla based on differences in how food is obtained, pigments, flagella, composition of a cell wall and environments in which the organisms live. As with plants and animals, scientists have also created informal categories (not taxonomic categories) to help classify protists. Algae Protozoa Slime molds “Plant like protists” “Animal like protists” “Fungi-like protists” Photosynthesize Ingest food Absorb nutrients like fungi May move May move Can move Example: green, red and brown algae Example: amoebas, plasmodium (causes malaria) Cognitive Learning Systems, Inc © 2008 Classification and Taxonomy You have just explored a portion of the three domains and four kingdoms used in one of the scientific classification and taxonomic systems. Do you remember the following diagram? Domain Kingdom Kingdom What levels of the taxonomic system did you investigate? Which levels did you NOT investigate? Phylum class order Phylum class order family family genus genus species Cognitive Learning Systems, Inc © 2008 species Classification and Taxonomy You did NOT investigate and memorize all of the organisms in the different phyla, classes, orders, families, genera and species. Kingdom How could you look at the taxonomy of different organisms and draw conclusions about their similarities? Domain Kingdom Phylum class order Phylum class order family family genus genus species Cognitive Learning Systems, Inc © 2008 species Binomial Naming System One way to compare two organisms or to correctly identify an organism is to use the Kingdom scientific name for an organism. Domain Kingdom Phylum Phylum The scientific name comes from the Binomial Naming System. class class “Binomial” means “two.” order An organism is given TWO names as its scientific name. order family It is named with its genus and species. family genus This system was not discovered but was put into common practice by Carolus Linnaeus. Cognitive Learning Systems, Inc © 2008 genus species species Binomial Naming System When using the scientific name, the first letter of the genus name is capitalized. All other letters of the genus and species names are lowercase. Domain Kingdom Kingdom The scientific name can either be underlined or put in italics. Example: scientific name (binomial name) for “modern humans” Homo sapiens Phylum class order class order family Homo sapiens family genus If the name is used several times in a publication, it can be abbreviated after writing in full the first time. Examples H. sapiens , E.coli, T. rex Cognitive Learning Systems, Inc © 2008 Phylum genus species species Binomial Naming System Compare these two organisms. Homo erectus Domain Homo sapiens Kingdom Kingdom Phylum What conclusions can you make? Are they the same species? class Are they from the same genus? order Are they from the same family? class order family Are they from the same order? Phylum family genus genus Are they from the same class? species Are they from the same phylum? Are they from the same kingdom? Cognitive Learning Systems, Inc © 2008 species Using Taxonomy Another way to compare organisms would be to look at the entire taxonomic classification of two organisms. Taxa Human Armadillo KIngdom Animalia Animalia Phylum Chordata Chordata Class Mammalia Mammalia Order Primata Cingulata Family Hominidae Dasypodidae Genus Homo Dasypus Species Sapiens Novemcinctus What conclusions can you make about the similarities that humans and armadillos may share? Cognitive Learning Systems, Inc © 2008 Check Understanding 1. Describe two ways in which animals can be classified. 2. How are protists different from plants, fungi and animals? 3. Explain the type of information a scientific name can tell someone about an organism. Cognitive Learning Systems, Inc © 2008 Classification Making and Applying Connections Cognitive Learning Systems, Inc © 2008 Making and Applying Connections A B C D Cognitive Learning Systems, Inc © 2008 Images courtesy: http://images.fws.gov; Evan H.C. Grant, USGS Patuxent Wildlife Research Center;www.nmfs.noaa.gov 1. In which of these animals is body temperature NOT regulated by changes in its environment or surroundings? Making and Applying Connections 2. The table below shows eight different animals. Which of the following conclusions can you make? Animal Phylum Vertebrate Alligator Chordata Yes Bee Arthropoda No Frog Chordata Yes Bear Chordata Yes Starfish Echinodermata No Salmon Chordata Yes Spider Arthropoda No Octupus Mollusca No A. All of the animals belong to the same phylum. B. All of the animals that are NOT in the Chordata phylum are invertebrates. C. All of the animals in the Chordata phylum are reptiles. D. All of the animals are vertebrates. Cognitive Learning Systems, Inc © 2008 Making and Applying Connections 3. Madeline noticed that some types of organelles are not found in all protists. She plans to research the type of organelles in protists and whether the protists can photosynthesize or cannot photosynthesize. Which of these questions is Madeline most likely trying to answer? A. Does the type of organelles differ between protists that photosynthesize and those than do not photosynthesize? B. Does the type of photosynthesis differ between protists? C. Does the type of cell wall differ between protists that photosynthesize and those that do not photosynthesize ? D. Does the type of organelles differ between protists with different flagella? Cognitive Learning Systems, Inc © 2008 Making and Applying Connections 4. Which of the following diagrams BEST shows the organization of taxonomic levels from domain through species? B Species A Genus Genus Family Order Class Family Domain Kingdom Class Order Phylum Family Family Species Order Class Phylum Phylum Kingdom Kingdom Domain D Domain Kingdom Domain Kingdom Phylum Class C Order Domain Phylum Class Order Family Genus Species Class Family Genus Genus Species Cognitive Learning Systems, Inc © 2008 Phylum Order Family Kingdom Genus Species Making and Applying Connections 5. Which of the following describe the level of classification of Bacteria, Archaea and Eukaryota? A. B. C. D. Species Genus Kingdom Domain 6. Which of these would be the best evidence that an organism should be classified at the taxonomic level of Eukaryota? A. It is unicellular. B. It can survive in harsh conditions. C. It is microscopic. D. It has a nucleus. Cognitive Learning Systems, Inc © 2008 Making and Applying Connections 7. Griffin has been copying the information about the taxonomic classification of two different organisms into a chart. He leaves for lunch before completing the chart. What would you expect the Class for Organism #2 to be? A. B. C. D. Taxa Organism 1 KIngdom Animalia Phylum Chordata Class Mammalia Order Primata Primata Family Hominidae Hominidae Genus Pan Gorilla Species Troglodytes Beringei Animalia Mammalia Plantae Reptila Cognitive Learning Systems, Inc © 2008 Organism 2 Making and Applying Connections 8. Catherine has been researching organisms from the Amazon jungle. She has recorded information about each in the table below. What conclusions can she make about the organisms? Organism Observations Nucleus Type of Organism 1 Has a cell wall made of chitin Yes Unicellular 2 Obtains nutrients by secreting digestive enzymes and absorbing nutrients from a substance. Yes Unicellular 3 Has a filamentous structure Yes Multicellular A. Organisms 1, 2 and 3 are most likely fungi. B. Organisms 1 and 2 are most likely bacteria. C. Organisms 1 and 2 are most likely animals. D. Organism 1 is most likely a plant. Cognitive Learning Systems, Inc © 2008 Making and Applying Connections 9. Which of these explains how plants are different from animals and fungi? A. B. C. D. Plants are multicellular. Plants have a cell wall. Plants are photoautotrophic. Plants have a nucleus. Cognitive Learning Systems, Inc © 2008 Making and Applying Connections 10. Juanita has collected the following information about a plant. What is the scientific name of the plant? Domain Eukaryota Kingdom Plantae Phylum Magnoliophyta Class Magnoliopsida Order Fabales Family Fabaceae Genus Pisum Species Savitum Non-vascular No Vascular Yes Seedless No Seed Yes Type of Seed Flowering A. B. C. D. Flowering-seed plant Vascular-seed plant Plantae magnoliophyta Pisum savitum Cognitive Learning Systems, Inc © 2008