Organic Chemistry year 1 2011-2012 Professor Martin Wills Email: m.wills@warwick.ac.uk Office: C504 CONTENT OF LECTURES • Substitution reactions at saturated carbon atoms: ‘SN2 and SN1’. Mechanisms of substitution reactions, intermediates, orbital structures, implications for stereochemistry, inversion and racemisation. Clayden et al, Chapter 17. • Formation and reactions of alkenes: ‘E2 and E1’. Methods for making alkenes, structure and selectivity. Reactions of alkenes with electrophiles and nucleophiles. Oxidation and reduction reactions. Clayden et al. Chapters 19 and 20. Prof M Wills 1 What you should know – what you will learn What you should know by now: -Hybridisation (sp, sp2, sp3) of carbon atoms. -Orbital structure of C-C and C=C bonds. -E/Z and R/S definition and how to assign configuration. -Electronegativity and formal charge. -Organic reaction mechanisms – ‘arrow pushing’. -Factors which influence the stability of cations and anions. -Free energy and reaction profiles. What you will learn in this part of the course: -The detailed mechanisms of substitution reactions at saturated carbon atoms (SN2 and SN1 mechanisms). -Factors which influence the mechanisms of substitution reactions. -Methods for the formation of alkenes (E2 and E1 mechanisms). -Reactions of alkenes with electrophiles and nucleophiles. -Reduction and oxidation reactions of alkenes. Prof M Wills 2 Nucleophilic substitution reactions – overview: Why these reactions are important and some examples: Substitution reaction: replacing one group with another one! Some examples: 3 Substitution at a saturated (sp ) carbon atom (M Wills section): Br O O + Br N H + HBr What about the counterion? Substitution at a saturated (sp3) carbon atom (M Wills section): Br H2N Substitution at an unsaturated (sp2) carbon atom (discussed in G. Challis section, term 2): O Br O H2N N H + HBr What mechanisms could there be for this reaction? Can you define; the nucleophile, the electrophile, the leaving group. Prof M Wills 3 Substitution reactions – some definitions. What is the significance of the ‘saturated carbon atom’. What ‘shape’ do the groups around this atom define? sp3 hybridised carbon Br H H + O O Br Which leaving groups can be used – what ‘drives’ the reaction? Leaving group X H H + O O + X Key point: Good leaving groups are halides (Cl, Br, I), OSO2R, and other groups which stabilise a negative charge. Prof M Wills 4 Mechanisms of substitutions reactions: SN2 There are two major mechanisms of substitution reactions. The first is called the SN2 mechanism – Substitution, Nucleophilic, Bimolecular: What do these three terms mean? It is a single step mechanism; the nucleophilic adds and the leaving group is simultaneously displaced in the same step. A concerted mechanism. Br H H H O H + Br O Rate = k [nBuBr][nPrO-] What happens if I double the concentration of bromide? What if I double the concentration of bromide and of propoxide? Energy Bromide (starting material) Ether (product) Reaction co-ordinate. Prof M Wills 5 The transition state for SN2 reactions: The SN2 mechanism – structure of the transition state. What does this symbol mean? Br Br H H H H H H O What is the hybridisation at this C atom? Nu: Br O What ‘shape’ do the groups around this atom define? O + C C * antibonding orbital (empty C C bonding orbital (full) Note partial bonds to nucleophile and leaving group. Nucleophile adds electron density to * antibonding orbital. *** Key point of nomenclature; it’s SN2 not SN2*** This is important *** Prof M Wills 6 Stereochemical consquences of SN2 reactions: The SN2 mechanism – What happens at chiral centres: S configuration: Br R configuration Br H H Me H Me Me + Br O O O Key concept – inversion of configuration. *** Key point of nomenclature; INVERSION *** This is important *** Prof M Wills 7 Mechanisms of substitutions reactions: SN1 The second is called the SN1 mechanism – Substitution, Nucleophilic, Unimolecular: What do these three terms mean? It is a two step mechanism; the leaving group leaves in the first step to form a cationic intermediate and then the nucleophile adds in the second step INTERMEDIATE cation Br Me Me first step SLOW Me second step FAST Me - Br The first step is the ratedetermining step (rds) Me Me Me Me O -H O H O H Rate = k [C6H13Br] i.e. [nPrOH (nucleophile)] is not featured What happens if I double the concentration of bromide? What if I double the concentration of bromide and of alcohol? Cation (intermediate) Energy Prof M Wills Bromide (starting material) Ether (product) 8 Stereochemical consquences of SN1 reactions: Br Me Ph Me Ph - Br HO HO Me Ph or S configuration: Me Ph R configuration 50% O O + S configuration: Me Ph A racemic product is formed. (note - loss of proton not illustrated) 50% Why are there two products now? What happened to the square brackets? What is the ratio of the products? *** Key point of nomenclature; RACEMISATION *** This is important *** Prof M Wills 9 Nucleophilic substitution reactions: Summary. SN1 and SN2 The ‘1’ and ‘2’ refer to the molecularity of the reaction (the number of species in the rate Expression). SN1 is a two step reaction. SN2 is a one step reaction. SN2 mechanisms go with inversion of configuration, SN1 with racemisation. Make sure you understand the difference between an intermediate and a transition state. Other substitution mechanisms include the SN2’ : RNH Br H Me Prof M Wills RHN Me - Br 10 Factors which influence SN2 and SN1 reactions: ‘If I do a substitution reaction, will it go through an SN2 or SN1 mechanism?’ i) Substrate structure. Steric hindrance and cation stability. Unhindered substrate: Nu: = nucleophile - Will not form a stable cation if Br leaves: Br H H more likely to undergo SN2 H H Nu: Approach unhindered Hindered (substituted) substrate Will form very stable cation Br Me Me Nu: more likely to undergo SN1 Me Me Approach hindered by two large Me groups Me Cation stability: Me Me tertiary Me > Me H secondary > H Me H primary E2 Competes? > H H H methyl cation A primary halide is more likely to undergo SN2, a tertiary SN1. A secondary halide may do both, although a good nucleophile would favour SN2 and a weak nucleophine SN1. There are exceptions to all these guidelines. Prof M Wills 11 Other factors that increase cation stability. Cation stability can also be increased by an adjacent double bond or aromatic ring: H H H Charge is delocalised into the aromatic ring or double bond. is more stable than H benzyl cation H H allyl cation is more stable than H H However an adjacent benzyl or allyl group can also increase the rate of SN2 reactions, by stabilising the transition state: OMe MeO + Br OMe H H via + Br Br Orbital overlap lowers the transition state energy, and makes the reaction faster. Prof M Wills 12 Factors which influence SN2 and SN1 reactions cont: ii) Effect of the solvent. Solvents which stabilise cations will tend to favour SN1. For example dipolar aprotic solvents such as dimethylformamide (DMF) and dimethylsulfoxide (DMSO). iii) Effect of the nucleophile. In general, more reactive nucleophiles favour the SN2 reaction. This is fairly logical. Examples of 'reactive' nucleophiles: Alkoxides: RO Amides: RNH Alkyl anions (for example Grignard (magnesium based) reagents: R (RMgBr) Some relatively stable anions are good nucleophiles e.g. Examples of 'less reactive' nucleophiles: Alcohols (not deprotonated) ROH Anions of thiols R S Anions of phenols so are neutral phosphines R3P Amines (not deprotonated) RNH2 O Stabilised nucleophiles e.g. acetate: O O iv) Effect of the leaving group; good leaving groups are needed for both mechanisms. Prof M Wills 13 SN2 vs SN1 – all aspects must be considered: MeO K (DMSO=Me2SO) + Br H H OMe INVERSION i.e. good nucleophile, not very hindered substrate, good leaving group, hence SN2. Ph Br Ph H2O Me Ph + Me OH HO 50:50 RACEMIC Me i.e. weak nucleophile, more hindered substrate, potential for stable cation, hence SN1. What would be your prediction of a mechanism for: Ph Ph Ph Prof M Wills pyridine Cl + R OH Ph Ph Ph ? O Ph N pyridine (mild base) 14 Formation and use of the OTs leaving group (very common in synthesis): OH H H + Cl O O S O O O S H OTs H H H (TsCl) O O + O O O S TsO What is the mechanism, and why go to all this trouble, i.e. why is OH a poor leaving group? How else can it be Made into a good leaving group? Key point; Learn what a OTs (tosyl group) is – it will come up again! Prof M Wills 15 Alkenes– reminder of structure and formation: Already discussed in Prof M. Shipman’s lectures: In the case of a carbon atom attached to three other groups (by two single bonds and one double bond) the single 2s and two2p orbitals mix (rehybridise) to form three sp 2 orbitals. These are all arranged at mutual 120 degree angles to each other and define a trigonal shape, the remaining p orbital projects out of the plane of the three sp2 orbitals and overlaps with an identical orbital on an adjacent atom to form the double bond: 1 x 2s 2 x 2p on a carbon atom combine to form 3 x sp2 orbitals: C which lie at mutual 120 degrees in a molecule such as etheneC2H6, whilst the remaining p orbital forms the double bond: H H H H H C C H H H The resulting structure is rigid and cannot rotate about the C=C bond without breakage of the bond between the p-orbitals (the p bond). The can be separated into E and Z configuration isomers. The p bond is much more reactive than the bond – the bonds are not equivalent to each other. Prof M Wills 16 Alkynes – reminder of structure and formation: In the case of a carbon atom attached to two other groups (by one single bonds and one triple bond) the single 2s and one 2p orbitals mix (rehybridise) to form two sp orbitals. These are all arranged at mutual 180 degree angles to each other and define a linear shape, the remaining p orbitals projecting out from the sp orbital to overlap with identical orbitals on an adjacent atom to form the triple bond: 1 x 2s 1 x 2p combine to form 2 x sp2 orbitals: on a carbon atom C which lie at 180 degrees in a molecule such as ethyneC2H4, H whilst the remaining p orbitals form the triple bond: H H C C H Both p bonds in an alkyne are much more reactive than the bond. Prof M Wills 17 Alkenes – formation: Most (but not all) alkene formation reactions involve an ELIMINATION reaction. Alkyne reduction is also important (see later). Ph H H Ph H Ph H Br Ph Ph - HBr H E-alkene and/or Ph H H Z-alkene Recap on alkene structure. Can you use the Cahn-Ingold-Prelog rules to determine the configuration? Key point – H from one carbon atom and a leaving group (typically a halide) from the adjacent carbon atom. Prof M Wills 18 Mechanisms for the formation of alkenes: E1 and E2: Most elimination reactions, to form alkenes, involve an E2 or E1 elimination. E2 = Elimination, bimolecular. It is a one-step reaction. A strong base is needed - why is this? MeO H Br H H H H Rate = k [Cyclohexylbromide][MeO-] (This is a base) Energy Bromide (starting material) Alkene (product) Reaction co-ordinate. Prof M Wills 19 E2 elimination – stereochemical implications: The ‘anti periplanar’ requirement. E2 reactions require correct orbital alignment in order to work. The optimal arrangement is ‘anti periplanar’, where the ‘H’ and ‘Br’ (in an alkyl bromide) are anti to each other. Ph Ph can form a E- or Z-alkene upon elimination: Br H H Ph Ph H Br Ph H H Ph Ph H H Ph E- alkene. H H Ph H Ph Br H Ph H Ph H Ph H Ph Z- alkene. Which base would you use? Prof M Wills 20 E2 elimination – stereochemical implications: orbital alignment: Orbital alignment in E2 elimination reactions: But O H Substrate H H Ph Ph H tBuOK (base) Ph H tBuOH H Ph Br - Br But O H H H Ph H Ph Br tBuOK (base) H Ph H Ph Ph H Ph H H Ph E- alkene. Br tBuOH H Ph Br - H Ph H Ph Br H Ph H Ph Z- alkene. The alignment of and * orbitals in the substrate leads to a smooth transition to a p bond in the product. Which is the most likely product? Prof M Wills 21 The E1 elimination mechanism: E1 = Elimination, unimolecular. It is a two-step reaction. It proceeds via a cationic intermediate. Me Br H H -Br Me Me H H H Et3N: Rate = k [Methylcyclohexylbromide] Triethylamine (Et3N) is a weak base. Why does the substrate now have an extra methyl group? Why was a weak base used in this reaction? Cation (intermediate) Energy Bromide (starting material) Alkene (product) Reaction co-ordinate. Prof M Wills 22 Nature of the intermediate in an E1 reaction: E1 reactions proceed through a ‘flat’, i.e. trigonal, cation (like SN1 reactions). Me Br H Me Me H -Br H 2 sp carbon H H H 3 sp carbon Me H Sometimes multiple products are formed (irrespective of mechanism)– What products would you predict from this reaction (more than one is possible)? Me Br Me Et3N (mild base) ? E1 Prof M Wills 23 Formation of alkenes by elimination of alcohols: See if you can write the mechanism for the following (E1) reaction: Me HO HCl (strong acid) MeOH (solvent) Me ? ? H Why is acid needed when the alcohol is the leaving group – why can’t we rely on a base? What other alkene product can be formed, and how? What would be the effect of using a base and an acid in the following? – write mechanisms. HO H2SO4 Br KOtBu ? ? K O E1cb ‘conjugate base’ is less common mechanism, but important. Prof M Wills 24 Some alternatives to ‘simple’ elimination – the Wittig reaction: The Wittig reaction is one of a number of reaction that provide a means for controlling where the double bond ends up. O Ph3P CH2 Phosphonium ylid H2C + Ph3P O the isomer, H3C is not formed This is how the ylid is formed: PPh3 + base CH3Br Ph3P CH3 Ph3P CH2 Ph3P CH2 Key point: this is important – learn it Prof M Wills 25 Some alternatives to ‘simple’ elimination – the Wittig reaction (this is important – learn it) Here is the mechanism of the Wittig reaction (you need to complete it). O Ph3P CH2 H2C + Prof M Wills Ph3P O 26 Substitution vs elimination, base vs nucleophile: Sometimes a particular substrate can undergo a substitution or an elimination reaction. The outcome depends on all the factors involved in the reaction; The ‘is an alkoxide a nucleophile or a base?’ question. Answer - depends what it does:. Br MeO Na MeO Alkoxide is a nucleophile. Br MeO Na Alkoxide is a base. The most important factor is probably the substrate structure – deprotonation may outpace nucleophilic addition when a substrate is very hindered. Certain substrates cannot undergo elimination reactions. Prof M Wills 27 Reactions of alkenes with electrophilic reagents - bromine: Alkenes are electron rich (in the p system) and react with electrophilic reagents: Br R Br2 R R R Br The mechanism is as follows, the intermediate is a bromonium ion: R R Br what about Prof M Wills Br Br R R R R Br Br Br ? 28 Further additions of electrophiles to double bonds - HBr: Hydrogen halides (HCl, HBr) also add across double bonds. Br R R R R HBr R R R H R The mechanism involves the addition of a proton first (with the electron-rich alkene), then the bromide. This is logical, because the alkene is electron rich. R R R R R R R Prof M Wills Br H R H Br R R R R H 29 Regioselectivity of electrophilic additions to alkenes: Addition of HCl and HBr (and other acids) across unsymmetric alkenes results in formation of the more substituted halide (via the more substituted cation). H H H3C H HBr H3C H Br H H Major Br H H H3C H H Minor H The mechanism involves the addition of a proton first, as before, but in this case the unsymmetrical intermediate has a larger density of positive charge at one end. more stable cation BrH H3C H Br H H3C H H What about H H H Br H H H H3C H H H H H3C H less stable cation major Br H3C H H H H minor ? Ph Prof M Wills 30 Acid catalysed hydration (addition of water) to alkenes: Acid catalysed hydration (addition of water) is a very important reaction of alkenes: H H H3C H H2O H3C H OH H H + H catalysis H OH H H3C H + Major H Minor H The mechanism involves the addition of a proton first, as before, followed by addition of water, the regioselectivity is the same as for addition of HBr: OH2 acid H3C H3C H H H (H ) H H H H H H H2O H3C H H O H H H H H3C H regeneration of H O H H H This mode of addition of H2O is referred to as ‘Markonikov’ selectivity (i.e. formation of the MOST substituted alcohol via the MOST substituted cation. Prof M Wills 31 Radical reactions of alkenes: HBr in diethylether containing peroxides. HBr, peroxides in ether Br anti Markovnikov addition. H Mechanism (Clayden et al p 1033-1035) RO H Br 2 RO . (radical) OR HO. Br H Prof M Wills 32 Nucleophilic additions to C=C bonds – require nearby electron withdrawing groups (‘ewg’). The polar effects of C=O bonds can be transmitted through adjacent C=C bonds, e.g. An enone: (a compound with a directly linked C=C and C=O double bond) can react with a nucleophile at either the C of the C=O bond or at the C at the end of the C=C bond. This is called conjugate addition, 1,4-addition and/or ‘Michael’ addition. H C H O C O H C H R H C H C R C H H H (a nucleophile) Add acid at end of reaction. H The oxygen atom drives the reactionit is more likely to gain a negative charge because it is more electronegative than adjacent atoms. C O H R C H C H H More on this from Prof Challis later in course. Prof M Wills 33 Polymerisation of alkenes/reactions of alkynes. Alkenes/Alkynes Another important reaction of alkenes is polymerisation, which is often radical-initiated: CH3 CH3 CH3 CH3 H3C n polymerisation Alkynes are capable of many of the same reactions as alkenes, but twice if enough reagent is used, e.g. addition of bromine: Br Br Br2 Br Br2 Br Br Br More on polymerisation later in the course (Professor Haddleton). Prof M Wills 34 Cycloaddition reactions of alkenes: The Diels-Alder reaction. Complete the diagram below: O + a conjugated diene O O Alkene (dienophile) Reaction is concerted i.e. all bonds are formed and broken at the same time: O O O O O O Stereochemistry: Bonds are formed on one face of the alkene, hence there is a high degree of stereocontrol. Prof M Wills 35 Alkene hydroboration reaction (important)! Overall reaction (reagents to be added): OH What happens if you carry out acid-catalysed hydration (addition of water). H Prof M Wills , H2O ? 36 Hydroboration mechanism – to be completed in lecture: i) BH3 Concerted addition of B-H bond across the alkene boron adds to least hindered end: OH + B(OH)3 ii) H2O2, HO BH3 O O HO-O All the B-H bonds are utilised. Three alkenes add to one borane. Prof M Wills - OH B B B B O note errror corrected here 37 Reduction reactions of alkenes: and alkynes, stereochemistry – formation of cis alkenes by hydrogenation. First you need to make a substituted alkyne: H H NH2 NaNH2 EtI H i) NaNH2 H I ii) Br Why do you need to use NH2? Can you use EtO or Et3N? This is the key reduction reaction: 1 R 2 H2 (gas), Pd/C, quinoline R or H2 (gas), Lindlar catalyst R1 R H H 2 catalyst surface Why is the quinoline added to the catalyst? What happens if you do not add it? The reduction takes place on a surface, and the hydrogen is transferred to one side of the alkyne. Prof M Wills 38 trans Alkenes can also be formed from alkynes: R1 Na, NH3, then H R2 tBuOH is often used as a source of protons. This is commonly known as ‘reducing metal’ reduction. It works by a mechanism in which ‘electrons’ are generated from the metal. Li, K and Mg are also sometimes used. Here is the mechanism: + Na 1 R R2 2 R2 R R1 R1 R2 R2 R1 Prof M Wills R1 R1 R2 39 Reduction of alkenes to alkanes – hydrogenation most commonly used: Commonly used Metals: Commonly used Supports: Stereochemistry: Relative rate of hydrogenation: slow reduction Prof M Wills fast reduction Why use a support, how does the reaction work? 40 Hydrogenation of alkenes to make margarine: Polyunsaturated fats are regarded as healthier than saturated ones but tend to be liquids so They are partially hydrogenated to make margarine – solid but still with double bonds in.. Polyunsaturated vegetable oil. CO2H Linolenic acid mp -11 oC H2 / Ni CO2H Linoleic acid mp -5 oC CO2H Oleic acid mp 16 oC H2 / Ni H2 / Ni CO2H Stearic acid mp 71 oC Fully saturated fatty acid. Saturated fats have high melting points because they pack more efficiently. Prof M Wills 41 Alkene oxidation reactions: Alkene oxidation reactions can give epoxides, diols, or even ketones from complete cleavage of the alkene. The p bond in alkenes is very reactive. 2 H R1 R H peracid O R 2 R H R1 O OH H H R1 R2 OsO 4 H H osmium tetroxide R1 Epoxide R2 H diol O3 H R1 + R2 H What is the structure of ozone? Why might these products be useful? Prof M Wills 42 Epoxidation of alkenes using peracids: O This is mCPBA, (meta-chloroperbenzoic acid) which is a commonly used peracid O H Ar H O O O O Cl mCPBA O H 2 R Ar H H O O 1 H R trans (E) alkene Learn the mechanism: H mCPBA O H Ar O O R1 R2 cis (Z) alkene Ar O O O H H R2 R1 H H R2 R1 H This is one of the best mechanisms! Prof M Wills 43 Ozonolysis of alkenes cleaves the double bond: H 1 R R2 i) O3 H ii) reducing agent (e.g. Zn metal, Ph3P, Me2S H R2 + R1 H reducing agent H 2 R 1 R H H R2 H R2 R1 H R1 H ozonide Predict the products from: i) O3 ii) reducing agent (e.g. Zn metal, Ph3P, Me2S OMe i) O3 ii) reducing agent (e.g. Zn metal, Ph3P, Me2S Prof M Wills 44 Alkene dihydroxylation: Potassium permanganate (KMnO4) O O Mn O O 2 H2O O O Os O O 2 H2O What products are formed using the following alkenes and OsO4? i) OsO 4 ii) 2 H2O i) OsO 4 ii) 2 H2O Note – OsO4 is expensive and very toxic. Better to use it catalytically (how would you do this?). Prof M Wills 45 The Wacker Oxidation: O catalytic PdCl2, H2O, O2, CuCl2 1 1 R R + This is a commercial reaction used on a large scale in industry. The CuCl2 and O2 reoxidise the PdCl2 (Pd is expensive). Prof M Wills 46 What you should understand and know: • MECHANISM OF REACTIONS AT SATURATED CARBON ATOMS The mechanisms and stereochemical implications of SN2 and SN1 reactions. Inversion with SN2, racemisation with SN1. Factors which determine the likely pathway. Alternative leaving groups. Examples of applications in synthesis. • SYNTHESIS AND REACTIONS OF ALKENES (C=C) E1 and E2 elimination mechanisms. Stereoselective alkene synthesis from alkynes by hydrogenation and dissolving metal reduction; Wittig reaction including ylid formation and mechanism; hydrogenation of alkenes; epoxidation, dihydroxylation and ozonolysis of alkenes; hydration and hydroboration of alkenes; Wacker oxidation; Diels-Alder cycloaddition. Prof M Wills 47