Profiles Research Networking Software
Users Group Meeting
http://profiles.catalyst.harvard.edu
March 15, 2013
Agenda
• Welcome to New Members
• Upcoming Events
• Profiles RNS 1.0.3
Profiles Users Group Members
UCSF
Fred Hutchinson CRC
Oregon Health Sci U
UC Davis (CBST)
Touro University
U Southern California
UCLA
UC San Diego
Charles Drew
U Hawaii
Arizona State
Montana State
U Colorado Denver
U Nebraska-Lincoln
UW Madison
UW-Milwaukee
U Illinois
U Chicago
Baylor College Med
UT Southwestern
UT Houston
Midwestern State Univ
Jackson State (RTRN)
Ohio State
Cincinnati Children’s
Case Western
U Kentucky
Vanderbilt Stem Cell
U Arkansas Little Rock
U Alabama Birmingham
Symplectic Limited (UK)
McGill University (Canada)
Finders University (Australia)
University of Cambridge (UK)
Elysium, Geneva (Switzerland)
Makerere University (Uganda)
University of Leuven (Belgium)
South-Valley University (Egypt)
Erasmus University (Brussels)
Beijing Normal University (China)
University of the South Pacific (Fiji)
Velammal Engineering College (India)
University of Limpopo (South Africa)
Nati Sci Lib, Chinese Acad of Sci (China)
Clinical & Biomedical Computing Ltd (UK)
Jonkoping University Engineering School (Sweden)
Universidad Nacional Autonoma de Mexico (Mexico)
Ministério da Ciência e Tecnologia e Inovação (Brazil)
Jaypee University of Information Technology (India)
Centre Interdisciplinaire de Nanoscience de Marseille (France)
Harvard
Univ Minnesota
Dartmouth
Univ Mass
Boston Univ
Tufts Univ
Boston VA
Rensselaer
Univ Connecticut
Univ Rochester
NYU Med Ctr
Long Island University
Mount Sinai Sch of Med
New Jersey Med Sch
MedMeme
Thomas Jefferson
UPenn
Johns Hopkins
USUHS-CNRM
NIH
George Wash U
Penn State
Childrens Nat Med Ctr
Duke Cancer Institute
Wake Forest
Leadership in Med
HSSC
Georgia Tech
Piedmont Healthcare
Emory University
Upcoming Events
• AMIA TBI/CRI, San Francisco, CA, March 18-22, 2013
• UCSF Poster: Usage of a Research Networking Tool at a large
Academic Biomedical Institution
• UCSF Presentation: Open Research Networking Gadgets (ORNG)
• Harvard Poster: EAGER-Profiles: Using Researcher Profiles to
Demonstrate the Impact of Investments in Science
• Science of Team Science Conference, Evanston, IL, June 24-27, 2013
• VIVO Annual Conference, St. Louis, Missouri, August 14-16, 2013
Profiles RNS 1.0.3
• New Features
• Concept Profile Page (MeSH Info, Top Journals)
• Publication Profile (Subject Areas)
• Performance enhancements
• Jobs, .NET caching, snapshot isolation, etc.
• Bug fixes
• Overview editing, Pubmed disambiguation failures, etc.
• Process
• Managed by Recombinant by Deloitte
• Still distributed from http://profiles.catalyst.harvard.edu
• Source code in GitHub at
https://github.com/ProfilesRNS/ProfilesRNS
• What’s next?
• OpenSocial from UCSF
VIVO Ontology: Select Classes and Object Properties
Main classes used by Profiles RNS 1.0 are highlighted in bold.
foaf:Agent
vivo:mailingAddress
vivo:mailingAddressFor
vivo:Address
vivo:FacultyMember
vivo:authorInAuthorship
vivo:linkedAuthor
vivo:hasResearchArea
vivo:researchAreaOf
vivo:Relationship
skos:Concept
vivo:Authorship
vivo:linkedInformationResource
vivo:informationResourceInAuthorsip
vivo:subjectAreaFor
vivo:hasSubjectArea
bibo:Article
vivo:Project
vivo:hasMemberRole
vivo:memberRoleOf
bibo:Patent
vivo:hasTeacherRole
vivo:teacherRoleOf
vivo:Role
vivo:Position
vivo:TeacherRole
vivo:FacultyPosition
vivo:MemberRole
vivo:NonAcademicPosition
event:Event
vivo:Course
bibo:AcademicArticle
bibo:Book
vivo:URLLink
vivo:personInPosition
vivo:positionForPerson
vivo:roleRealizedIn
vivo:realizedRole
vivo:InformationResource
bibo:Document
vivo:webpage
vivo:webpageOf
foaf:Person
vivo:roleRealizedIn
vivo:realizedRole
vivo:positionInOrganization
vivo:organizationForPosition
foaf:Agent
foaf:Organization
core:Department
event = http://purl.org/NET/c4dm/event.owl#
foaf = http://xmlns.com/foaf/0.1/
skos = http://www.w3.org/2008/05/skos#
vivo = http://vivoweb.org/ontology/core#
core:Division
Profiles RNS 1.0.3 Installation Data Flow Diagram
Selected data sources (circles), tables (grey boxes), and procedures (red boxes) used during the installation of Profiles RNS 1.0.3.
Source Data
[Ontology.Import].
[Owl]
Ontology
*.OWL Files
Intermediate Processing Tables
InstallData.xml
[Framework].
[InstallData]
[Ontology.Import].
[Convert
OWL2Triple]
[Ontology.Import].
[Convert
Triple2OWL]
[Ontology.Import].
[Triple]
[Ontology.].
[UpdateCounts]
[Ontology.].
[UpdateDerivedFields]
[Framework.].
[LoadInstallData]
[RDF.Stage].
[LoadTriples
FromOntology]
[RDF.Security].
[NodeProperty]
[RDF.Stage].
[Triple]
[Profile.Import].
[Beta.LoadData]
Data
[Framework.].
[RunJobGroup]
HR
Database
Custom Process to Load
[Profile.Import].* Tables
Disambiguation
Services
[Profile.Data].
[Publication.PubMed.
GetPersonInfoForDisambiguation]
SemGroups
/MeSH.xml
[Profile.Data].
[Concept.Mesh.File]
Extended
Schema
Tables
[Utility.NLP].
[UpdateThesaurus]
[RDF.Stage].
[LoadAliases]
[RDF].[Alias]
[Search.Cache].
[Public.UpdateCache]
[Search.Cache].
[Public.*]
[Search.Cache].
[Private.UpdateCache]
[Search.Cache].
[Private.*]
[RDF.Stage].
[ProcessTriples]
[RDF.Stage].
[ProcessDataMap]
[RDF.Stage].
[InternalNodeMap]
[Profile.Data].
[Concept.Mesh.
ParseMeshXML]
_*
(Derived Fields)
[Ontology.].*
[Framework.].*
[Framework.].
[CreateInstallData]
[Profile.Import].
[BetaSetDisplayPreferences]
Profiles
Beta
Tables Used by the Website
[RDF.].[Node]
[RDF.].[Triple]
[Utility.NLP].
[Thesaurus]
Concept – MeSH Info, Journals
Publication – Subject Areas