Foundations of Genetic Research: A Primer

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Foundations of Genetic

Research: A Primer

How can something so tiny make such a big difference?

Rebecca A. Lundwall

Psychology Department

Brigham Young University

Just a Few Branches of Genetics

Classical (Mendelian) genetics

Developmental genetics

Evolutionary genetics

Genomics (sequences)

Medical genetics

Population genetics

◦ Quantitative genetics

Genetic epidemiology

Psychiatric genetics

Behavioral genetics

◦ Molecular genetics

Heterogeneity

 Individuals are different in behavioral as well as physical traits.

 Some of the differences might be influenced by genes.

Behavioral Genetics

Behavior

Genetics

The attempt to establish heritability: that

any genes influence a particular behavior.

Initial approaches often use twin and/or adoption studies.

Fraternal and Identical Twins

Fraternal “twins” from separate eggs are not any more genetically alike than other siblings.

Identical twin: Same sex only

Twin & Adoption

Studies

Assess the impact of nature & nurture:

 study traits of siblings vs. identical twins

 see if siblings vary more than twins

Fraternal twin: Same or opposite sex

Identical vs. Fraternal Twins

Studies of twins in adulthood show that identical twins are more alike than fraternal twins (even if reared apart) in:

 personality traits such as extraversion (sociability) and neuroticism (emotional instability).

 behaviors/outcomes such as the rate of divorce.

 abilities such as overall Intelligence test scores.

Study the traits of identical twins as they grow up together or separately

(Minnesota Twin

Family Study).

Concordance

The probability that the second twin will have a certain trait if the first does. If the

MZ concordance is higher than the DZ concordance that suggests genetic influence to the extent that the MZ twins were treated no more similarly than the DZ twins.

Identical Twins Raised Apart

Even if raised apart, identical twins are still more similar to each other than to family they were raised by on:

 personality

Adopted children also seem to be more similar to their genetic relatives than their environmental/nurture relatives

 abilities/IQ

 attitudes

 interests

 specific fears

 brain waves, heart rate

All of this means that it is worth investigating genetic influence on these behaviors.

Molecular Genetics

Behavior

Genetics

Molecular

Genetics

Molecular genetics is an extension of behavior genetics that asks the question, “Which genes influence a particular behavior?”

Genes: Protein Makers

The Nucleus contains Chromosomes which in turn contain DNA (deoxyribonucleic acid)

Segments within DNA consist of genes that make proteins including enzymes and neurotransmitters.

The Human Genome

 46 chromosomes in 23 sets matched sets

 X and Y chromosomes are not a matched set in males, who are missing some genes on the Y.

 Each person’s chromosomes have the same gene locations as everyone else

 Each biological parent donates half a set of chromosomes to his/her offspring.

How Genes Work

 This genetic protein assembly can be turned on and off by the environment, regulatory regions of the gene itself, or by other genes.

 Almost any trait we see is a result of the complex interactions of many genes and countless other molecules.

Recall that a gene (and DNA generally) consist of sequences of nucleotide bases:

◦ A= adenine

◦ T = thymine

◦ G= guanine

◦ C =cytosine

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Variation in SNPs and VNTRs

SNPs

Parent 1: A A C C T C TA C A C

Parent 2: A A C C T T TA C A C G

= Possible genotypes: CC, CT, TT

VNTRs

3 repeats: CCACTCAGG CCACTCAGG CCACTCAGG

2 repeats: CCACTCAGG CCACTCAGG

= Possible genotypes: 3R/3R, 3R/2R, 2R/2R

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Drug Dose-Response

 Vary dose of some treatment drug.

 Associate any behavioral outcome with drug dose.

 A common pattern is a drug dose-response.

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Gene Dose-Response

 A single SNP can influence the rate or quality of the protein produced.

 We can associate any behavioral outcome with genotype.

 A common pattern is a gene doseresponse.

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Example ANOVA

We have found significant differences in RT by genotype on COMT at SNP

#rs4680

Significant associations between a SNP or VNTR and a behavior commonly explain 3-12% of the variation in behavior.

Example Slope (Multilevel Modeling)

We’ve also found significant differences in RT slope across trials by genotype on COMT at SNP #rs4680. Less than 25% of variance explained.

But Things Get Complicated

Polygenic Inheritance – Process by which several genes interact to produce a certain trait; responsible for our most important traits.

Pleiotropic inheritance – the effect of a single gene on more than one characteristic trait trait trait trait

Gene-Environment Interaction

• Genes can influence traits, which influence responses, which influence the environment, which can influence gene activity.

• For example, a genetic predisposition influences a child to be restless and hyperactive evokes an angry response from his parents.

• Or, a stressful environment can trigger genes to manufacture neurotransmitters that lead to depression.

Interaction of Genes and Environment

 Genes can turn each other on and off in response to environmental conditions

Example: shortened daylight triggers animals to hibernate

Example: obesity in adults can turn off weight regulation genes

 Epigenetics: the environment acts on the surface of genes to alter their activity

Histones can be modified by enzymes. One of the most common modifications is methylation

(adding a methyl group). This slows transcription (the copying of DNA into RNA so a protein can be built).

Example of Genetic Influence

Longitudinal Study (vs Cross Sectional)

The SLC6A4 gene influences the level of serotonin, which is known to play a role in mood.

Caspi et al. (2003)

There is a VNTR on the SLC6A4 gene.

Long version - a little over 50% of population

Short version - a little less than 50%

The researchers compared participants with a normal SLC6A4 (long) VNTR with participants with shorter alleles.

Specifically after stressful events.

Caspi et al. (2003)

Results

After stressful events, the participants with the shorter SLC6A4 VNTR were more likely to become depressed.

The SLC6A4 gene could be involved in vulnerability to depression.

Example Implications

Identifying At-risk Children Earlier

We can look at infant siblings of kids who have Autism

The infants don’t have autism, but they share 50% of their genes with their biological siblings

If the infants do poorly on some skill related to autism and then later go on to develop autism, we can identify which genes influence the development of autism

Identifying children earlier allows us to intervene and enroll infants in parentinfant programs that prevent the development of some symptoms and ameliorate the development of others

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Knowing How to Change the Environment

Some genes do not confer risk for problem behavior, but sensitivity to the environment

BDNF and MAOA are two of these

Children are more likely to grow up to be delinquent only if they have both a risk allele and they grow up in a harsh home environment

If we are kind to them, they grow up amazingly well – otherwise . . .

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Finding Better Treatments for Intractable

Psychiatric Disorders

Treatment Refractory Depression and Treatment

Resistant Obsessive –compulsive disorder

Finding a biological pathway is associated with particular, more severe symptoms may make these types of disorders easier to treat with medications

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