Principles of Clinical Pharmacology January 9, 2003 Module 2: Drug Metabolism and Transport Unit 6: Concentrative and Equilibrative Drug Transport Peter C. Preusch, Ph.D. Pharmacology, Physiology, and Biological Chemistry Division National Institute of General Medical Sciences Objectives • Vision, reality, and the path between. • Methods of measuring drug transport in vitro and in vivo. • Mechanisms of drug transport. • Recent advances in understanding the role of membrane transport proteins. • Clinical significance. Measurements of Drug Distribution Reflect Membrane Transport In Vivo • Blood/tissue Samples, Biopsies, and Assays • Autoradiography • Perfusion/Cannulation Methods – Note ability to biopsy lumen wall or collect shed cells in the same intestinal perfusionexperiments – Loc-I-Gut – In vivo P(eff) amoxicillin +/- amiloiride (Na/H exchange inhibitor) – no effect on low P(eff) drug • Radiology - X-ray, PET, SPECT • Magnetic Resonance Imaging • Microdialysis Measurements of Membrane Transport In Vitro • Ussing chamber - excised tissue samples • Everted gut sac - uptake from medium • Uptake/efflux by membrane vesicles, liposomes, BLM, PAMPA, cells in culture (CHO) - filtration, centrifugation, oil-stop separatory assays • Fluorescent (confocal) microscopy of cultured cells fluorescent drugs (mitoxantrone, rhodamine) • Electrophysiology in cells (e.g., oocytes) • Monolayer cell cultures on permeable supports – Caco-2 cells, MDCKII, brain MVECs Measurement of Transport in Excised Tissue Samples Modified Ussing-chamber allows perfusion of solutions on both sides of membrane holder, control of pressure differential, measurement of potential, conductivity, pH. Adapted from Ref. 7. Monolayer Epithelial Cell Culture I.J. Hidalgo, in ref. 6, Models for Assessing Drug Absorption and Metabolism (Borchardt, et al., Eds.) Plenum Press, NY, 1996, p. 38. Thermodynamics of Transport • • • • • • • Transport of neutral species Ions & transmembrane potentials Ionizable species & proton gradients Metals and other titrants Macromolecular and cellular binding sites Coupled transport and ATP driven pumps Chemical conversions Equilibrative Transport Compartment Model + pHo SHo+ - So SoBo SHi+ Si Gpump KBo pHi Gtransp KBi SiBi S'i Equations for Membrane Transport Thermodynamics Gtransp = 2.303RT log[Si]/[So] + nF + Gpump R = 8.314 joules/molK = 1.987 cal/molK F = 96.5 Joules/mol-mV = 23.06 cal/mol-mV [Si]/[So] = 10x @ 296K (23°C) 310°K (37°C) (G) = = () = 5.67 kJ/mol 1.35 kcal/mol 58.5 mV 5.936 kJ/mol 1.41 kcal/mol 61.5 mV pH = pKa + log[S]/[SH] Examples Driving Force/Drug/Compartment Diffusion Ion trapping pH trapping Binding Active caffeine Tc-Sestamibi quinidine warfarin captopril total body water heart mitochondria renal excretion plasma/liver ratio GI absorption Proposed Mechanisms of Tetracycline Uptake and Efflux Mechanisms of Transmembrane Drug Transport - Example Drugs • Paracellular diffusion - ions, mannitol, polymers • Passive diffusion across lipid bilayer – fluoroquinolones, tetracycline (hydrophobic) • Diffusion through OM channels and porins – B-lactams, tetracyclins (hydrophilic, charged) • Facilitated diffusion – imipenem, catechols, albomycin, albicin • Active Transport – aminoglycosides, cycloserine, phosphomycin, alaphosphin • Vesicle Trafficking Mediated Transport – polymers, peptide hormones, targeted delivery Transcellular vs Paracellular Pathways N-trimethyl chitosan chloride coadmin increased permeation of nonopeptide buserelin in Caco-2 cells and enhanced bioavailability in rats from 0.8% to 6-13% Transepithelial Resistance (Ω cm2) renal tubule 6-7 gallbladder 20-30 intestine 30-100 chroid plexus 80 colon 290-500 Caco-2 230-1000 Gastric mucosa >1700 urinary bladder >2000 Details of Tight Junction EM of Caco-2 zona occluden zona adherens desmosome Ca++, IP3, PKC, CamK, MLCK Apparatus for On-Line Fluorescence Measurement of Transport in Epithelial Cell Cultures MDCKII MDR1 SDZ PSC 833 Daunorubicin ex = 480, em = 590 FITC-dextran ex = 480, em = 525 Trans Epithelial Resistance (TER) = 300 - 600 mm2 Ref. 8: Wielinga, et al., J. Pharm. Sci, 88(12), 1340, 1999. Paracellular versus Transcellular Transport Ref. 8: Wielinga, et al., J. Pharm. Sci, 88(12), 1340, 1999. Paracellular Permeability Enhancers • Examples: Ca++chelators, bile salts, anionic surfactants, medium chain FAs, alkyl glycerols, cationic polymers, cytochalsin D, hormones, TNF-α, enterotoxins, zonula occludens toxin (V. cholerae) • Substrates: Ions, mannitol, ceftoxin, dextrans, proteins • Advantages: – hydrophilic & macromolecular substrates – avoids intracellular degradation • Disadvantages: – toxicity due high mM concentrations needed – non-selectivity of substrate transport • Concern: systemic toxicity of lumenal contents, blood brain barrier effects (intended and/or not) Pinocytosis, Endocytosis, and Receptor Mediated Transcytosis • Pinocytosis (cell sipping - non-mediated) – non-specific, non-saturable, bulk fluid phase uptake, large particles, polymer-conjugates, obsolete term? • Endocytosis (receptor-mediated uptake) – specific, relevant to macromolecules, used to deliver small molecules as prodrugs, mediates clearance – insulin, growth hormone, erythropoetin, G-CSR, ILs • Transcytosis (receptor-mediated uptake and secretion on the translateral surface) – useful for macromolecules and small molecule prodrugs, GI, BBB, and pulmonary epithelia. • Protein translocation domain fusions (mechanism?) – Antennapedia homeodomain, HIV TAT protein, R7 vesicular transport Blood Brain Transcytosis Delivery of Prodrug Endothelial Cell From: Bickel & Pardridge in Ref. 22, p. 30. Transferrin receptor-mediated transcytosis of an mAB-avidin-biotindisulfide cross-linked vasoactive intestinal peptide. TfR, VitB12R, FcRn, PigR are under commercial development. Passive Diffusion • Characteristics of passive diffusion – kin = kout, net rate = k([So] - [Si]), non-selective • Model Membranes (experimental systems) – monolayers, bilayers, liposomes, BLMs, IAMs • Membrane Models (functional/mathematical) – structural, electrical, single/multiple barrier, partition adsorption/diffusive, unstirred layers • Simulation of bilayers and transport – molecular dynamics - diffusion within bilayer • QSAR - structure/transport correlations Molecular Dynamics Simulation of Membrane Diffusion From: Bassolino-Klimas, Alper and Stouch, ref. 16. See also ref. 17. Snapshot from 10 nsec MD simulation in 100 fs steps. Showed hopping motions of 8 Å over ca 5 psec vs RMS motions of 1.5 Å. Motions differ in center and near surface, both differ from bulk organic. Rotational isomerizations (gauche/trans) gate channels between voids. Differing motions available to adamantane, nifedipine. QSAR of Transport • Hansch Equation – – – – – log (1/C) = -k(logP)2 + k'(logP) + + k" C = dose or [S] for effect (ED50, IC50, rate) logP = partition coef or = lipophilicity factor = Hammett electronic substituent effects k, k', k", = regression coefficients • Free-Wilson Model – BA = ajXj + – BA = biological activity (e.g., log(1/c)) – aj = substituent constant, Xj = substituent presence, = overall average activity QSAR of Transport Selected from: V.Austel & E. Kutter in Ref. 18. ABSORPTION - log (%abs), log Perm, log k Barbiturates Sulfonamides Anilines Xanthines C-glycosides Gastric Gastric Gastric Intestine Intestine log PCHCL3/w log Pisoam-OAC/w pKa Distribution Coef log Po/w, Rm Excretion - log (%excreted), log ClR, log k Penicillins Suflathiazoles Sufapyridines Sulfonamides Amphetamines Biliary Biliary Renal Renal Renal logP, Rm logPo/w, pKa Rm, pKa , pKa logPh/w QSAR Conclusions Passive Diffusion is a function of: • Lipophilicity (logPo/w or CLOGP) – GI (0.5-2.0), buccal (4-4.5), topical (>2.0) • Hydrogen bond donors/acceptors, polarity/charge • Water solubility (measured or calculated) – melting point, solvation energy, pH/buffers • pKa - fraction of neutral species available • mw - D 1/mw; mw < 500 Da • Confounding factors - inaccurate data, paracellular transport, mediated transport http://www.simulations-plus.com/pdf_files/aaps_2000_report.pdf Neural Net models trained on up to 1337 compounds. Mediated Transport: Facilitated Diffusion and Active Transport • • • • • • • Rates > passive, solute specific, high Q10 Non-symmetrical (kin kout at [Si] = [So]) Saturable transport - Michaelis-Menten Inhibitable - competitive, non-competitive Regulated - inducibility & repression Tissue specific- differential expression Energy dependent - active transport – primary pumps - respiration, photosyn, ATPase – secondary transporters (coupled to H+, Na+ etc.) Membrane Transporter Models Circa 1991 Channel Pore Transporter Membrane Transporter Models Circa 2001 KscA OmpA GlpF FepA From: http://blanco.biomol.uci.edu/mptopo/ Cell Culture and Molecular Biology Methods (I) • Isolation of MXR genes (Ref. 25). – Cells cultured from patients w/ resistant tumors. – mitoxantrone uptake measured microscopically – Cells grown under progressively selective conditions mitoxantrone, adriamycin, verapamil – Isolation of differentially expressed mRNA as cDNA clones and cDNA sequencing. – Northern analysis of mRNA expression levels. – Southern analysis of gene copy amplification. – Quantitative PCR analysis of expression levels in non-selected resistant cells. Cell Culture and Molecular Biology Methods (II) • Isolation of BCRP genes (Ref. 26-27) – cells same as from Ref. 25 – cultured under selective conditions w/ doxorubicin and verapamil – RNA fingerprinting used to isolate cDNAs. – transfection of non-selected cells confers resistance to mitoxantrone, doxorubicin, daunorubicin – reduced uptake (dauno), enhance efflux (rhodamine 123) – Northern/Southern analysis of various cell lines Cell Culture and Molecular Biology Methods (III) • Isolation of MOAT-B,C,D (Ref. 28) – cMOAT (cannicular multispecific organic anion transporter) = MRP previously isolated – MOAT-B isolated by PCR – Homology search against EST datase suggests MOAT-C & MOAT-D – EST probe isolation of cDNA from human – RNA blot analysis of tissue expression library – chromosomal location by FISH Cell Culture and Molecular Biology Methods (IV) • Other Cloning Methods – – – – Expression cloning in oocytes Homologous hybridization Cloning by RT-PCR with degenerate primers Cloning by functional complementation Cell Culture and Molecular Biology Methods (V) • What have you got? MXR, BCRP, MDR, MRP, ABC – Homology search against database - BLAST – Sequence alignments and phylogenetic trees – Hydropathy analysis and transmembrane topology predictions - Kyte-Dolittle – ATP binding and other consensus motifs – Homology modeling from known transporters – Inferences about possible substrates/functions Biochemistry and Biophysics • Functional characterization – Expression of Transport Activity in Vitro – Substrate structure/activity profiles and cosubstrates (GSH, ATP, H+, Na+), uncouplers – Tissue distribution - EST database, RNA expression levels, antibodies, in situ methods – Phenotypes in Knock Out Rodents – Subcellular localization microscopy – Isolation, purification, reconstitution – Structural biology - EM, X-ray, NMR – Mechanism of substrate transport and energy coupling - enzymology, inhibition, drug design Structure of MsbA from E. coli: A Homolog of the Multidrug Resistance ATP Binding Cassette (ABC) Transporters Geoffrey Chang and Christopher B. Roth, Science Sep 7 2001: 1793-1800. Structure of bacterial oxalate transporter: a paradigm for the multifacilitator superfamily. T. Hirai, et al. (Subramaniam lab, NIH), Nature Structural Biology 9(8): 597-600. Low (6.5 Ǻ) resolution based on EM of 2D crystals. Membrane Transporter Families ABC Superfamily ABC peptide transporter family P-glycoprotein (MDR) family MDR1a,1b,2,3 - organic cations, lipids (PC) MRP1,2,3 - organic anions, GSX conjugates cMOAT - canalicular multispecific organic anion transporter = MRP2 cBAT - canalicular bile acid transporter Porins & Channels Major Facilitator Superfamily POT - proton coupled oligopeptide transporter NT - Na+ coupled nucleotide transporter NTCP - N+ coupled taurocholate protein OATP - polyspecific organic anion transport protein OAT-K1 - renal methotrexate transporter OCT - organic cation transporter - electrogenic RFC - reduced folate carrier sGSHT - glutathione conjugate transporter Organic Cation Substrates (MDR & OCT) (From Zhang, Brett, & Giacomini, Ref. 32) Substrates of cMOAT (canalicular multispecific organic anion transporter) Selected from Table IV in Chap. 14 in ref 42a. • glutathione disulfide • leukotrienes (C4, D4, E4, N-acetyl-E4) • glutathione conjugates (e.g., DNP, bromosulfophthalein, metals Sb, As, Bi, Cd, Cu, Ag, Zn) • glucuronide conjugates (bilirubin, T3, p-nitrophenol, grepafloxacin) • bile acid conjugates (glucuronides and sulfates) • organic anions (folates, methotrexate, ampicillin, ceftiaxone, cefadozime, grepafloxacin, prevastatin, temocaprilate) Drug Uptake by Endogenous Transporters in the Small Intestine Lee, et al., Adv.Drug Delivery Reviews, 2001. Table 1. Transporter Amino Acid Organic Anion Nucleoside Oligopeptide Monocarboxylic Acid Organic Cation Substrates L-DOPA, gabapentin Captopril, acyclovir Didanosine, idoxuridine Β-Lactam antibiotics Valproic acid, pravastatin Cimetidine, verapamil Nucleotide Transporters of Mammalian Cells (CNT1) From: C.E. Cass, in Ref. 31, Fig. 3, p. 413. es,ei = sensitivity versus nitrobenzylthioinosine Cloned from kidney. Apically expressed. N1 = SPNT or CNT2 N2 = CNT1 Nucleoside Drug Transporters Adapted from:C.E. Cass (Tables 1-4) in Ref 31. Cladribine (Cl-dAdo) Cytarabine (araC) 2-Fludarabine (F-araA) Pentostatin (dCF) Floxidine (F-dUrd) Didanosine (ddI) Zalcitabine (ddC) Zidovudine (AZT) Acyclovir (ACV) Gancyclovir (GCV) Vidarabine (araA) Idoxuridine (IdUrd) Trifluridine (F3-dThd) Ribavirin (RBV) Leukemia Leukemia Leukemia Leukemia Colon Cancer HIV HIV HIV HSV HSV HSV HSV HSV RNA/DNA es, ei, N1, N5 es, ei es, N1, N5 es es, ei es, NB es, N2 N2 NB es, NB es, ei, N1 es ND ND Tissue Uptake and Intracellular Drug Transport (subcellular PK) mito doxo OC+ MXR MDR Place Holder - Figure TBN MTP AT MRP VATP GSX AZT NT H+ RFC MTX PEPT valcyclo Exploiting Nutrient Transporters to Enhance Drug Bioavailability • Valacyclovir is an amino acid ester prodrug of the antiviral drug acyclovir. • Oral biovailability (AUC) is increased in humans 3-5x. • Intestinal permeability in a rat perfusion model is increased 3-10x. Effect is specific (SAR), stereospecific (L), saturable, and inhibitable by PEPT1 subsrates (cephalexin, dipeptides), and by gly-acyclovir, val-AZT. • Competitive with 3H-gly-sarc in CHO/hPEPT1 cells. • Enhanced, saturable, inhibitable mucosal to serosal transport demonstrated in CACO-2 cells and accompanied by hydrolysis. Serosal to mucosal transport is passive. • Rationale applied by Roche to design of valgancylcovir. • XenoPort, Inc. working on gabapeptin-XP Drug Interactions & Drug Transport • Digoxin - non-metabolized substrate for PgP – Verapamil, amiodarone, and quinidine increase plasma levels, reduce renal and non-renal clearance, increase blood/brain barrier transport. – Dose adjustment may be needed in 50% of cases. – St. John's wort (Hypericum perforatum) decreased digoxin AUC by 25% after 10 days treatment through induction of PgP. • HIV Protease Inhibitors – Amprenavir clearance reduced by nelfinavir (-41%) and by indinavir (-54%), but not saquinavir. – FDA warning against Hypericum supplements Drug Resistance & Reversal • MDR1 (P-glycoprotein) – drug efflux pump – Multiple trials of multiple agents – recent efforts at inhibiting transcription – Steady state digoxin therapy was established in normal healthy volunteers (1 mg then 0.125 mg/day). Initiation of valspodar (400 mg followed by 200 mg twice per day) caused immediate and progressive increases in digoxin AUC (+211%) and decreases in total body, renal, and non-renal clearance (-67%, -73%, -58%) after 5 days. • BCRP (breast cancer resistance protein or ABCG2) – Inhibited by fungal toxin fumitremorgin C, but neurotoxic side effects – Kol143 and other derived analogs developed inhibit BCRP, but not PgP or MRP – Non-toxic in mice, increased oral availability of topotecan in mice • RFC (reduced folate carrier) - antifolate drugs (methotrexate) – – – – – Resistant leukemia cell lines were selected by stepwise doses Cross resistance (>2000x) to five novel hydrophilic antifolates shown Intracellular folate levels reduced, increased requirement 42x Hypersensitive to hydrophobic antifolates Mutations clustered in exons 2 and 3, TMD1 Microbial Drug Transport and Resistance Mechanisms • Mechanisms of Drug Uptake in Bacteria – – – – OM porins, periplasmic binders, and IM pumps B-lactam channels - imipenem resistance nutrient uptake transporters - amino-glycosides siderophore uptake is a drug delivery target • Mechanisms of Drug Efflux in Bacteria – – – – Major facilitatory (MF) family RND family (AcrAB, EmrAB, TolC) SMR (small multidrugresistance pumps) ABC (ATP binding cassette) family Structures of MDR substrates (From K. Lewis, Ref. 47). Topology Models of Microbial Multidrug Resistance Pumps From: K. Lewis, Ref. 47, Fig. 2. Pharmacogenetics of Transport (I) • P-glycoprotein – Polymorphism in cell cultures • Gly185Val - selected for colchicine sensitivity • Ser893Ala - naturally occuring polymorphism – RFLP predicts ivermectin neurotoxicity sensitive P-gp-deficient mice. – Polymorphisms in 24 normal volunteers • Function effects on digoxin uptake measured • 7 intron, 3 wobble, 3' & 5' non-coding, 3 a.a. changes [C/T 3435 lowers 2-fold] – Polymorphisms now known in Pgp, MRP1 and MRP2 Pharmacogenetics of Transport (II) • OATP-C (organic anion transporting polypeptide-C) – liver specific uptake transporter – multiple SNPs detected, including 14 non-synonymous, gene frequency depends on race – 16 assessed in vitro, 8 result in reduced transport, esp. T521C (val174ala) occurs in 14% European- and G146C (gly488ala) in 9% of African-Americans • OCT1 (organic cation transporter 1) – electrogenic uptake, drugs neurotransmitters - 25 variations identified in 57 Caucasian samples - 3 (arg61cys, cys88arg, gly401ser) reduce transport and occur frequently (9/1%, 0.6%, 22%) Pharmacogenetics of Transport (III) Pharmacogenetics Network - UCSF Project http://pharmacogenetics.ucsf.edu OCT2 Transporter - renal tubule basolateral Adverse Effects - procainamide, clonidine Chromosome locus 6q26 Aliases - Organic Cation Transporter 2 - Solute Carrier Family 22, Member 2 - SLC22A2 Links to NCBI Data OMIM On-line Mendelian Inheritance in Man LocusLink Data Reference Sequence: Homo Sapiens mRNA for OCT2 from kidney. Gene Structure Introns/Exons Transmembrane Topology Prediction 1 2 3 4 Variants occur with frequency of 15% Coding regions and Exon/Intron boundaries For 247 DNA samples from Coriell Institute SNPs found at: Synonomous: 130, 223, 297, 401, 466, 502, 529 Non-Syn: 54, 161, 165 (2), 270 (2), 400, 432 Cellular phenotyping: Data to be gathered. Clinical studies: Data to be gathered 5 6 7 8 9 10 1 1 Pharmacogenomics of Transport (I) • Classification by mechanism, origin, topology, domain structure, energetics, energy source, substrate specificity, sequences, 3D structures • BLAST (Basic Local Alignment Search Tool) • INCA (Integrative Neighborhood Cluster Analysis) • T.C.# W.X.Y.Z (Saier et al)., e.g., MDR1 = 3.A.1.201 – W = type and energy source (3 = primary transporter) – Z = transporter family or superfamily(3.A = P-P cleavage) – Y = transporter subfamily (3.A.1 = ABC family) – Z = substrate transported (3.A.1.201 = multiple drugs) • http://www.biology.ucsd.edu/~msaier/transport/titlepage.html Pharmacogenomics of Transport (II) http://www.biology.ucsd.edu/~ipaulsen/transport/findings.html Pharmacogenomics of Transport (III) • Database of Bacterial Transporters (Saier & Paulsen) – http://www.biology.ucsd.edu/~ipaulsen/transport/index2.html • TIGR (The Institute for Genome Research – EGAD (Expressed Gene Anatomy Database) – http://www.tigr.org/docs/tigr-scripts/egad • Human Membrane Transporter Database – Sadee et al (AAPS Pharm Sci) – search by transporter, family, tissues/organ, substrates/drugs – http://lab.digibench.net/transporter/ • Human SNPs Consortium - search transporter => 58 hits 12/28/01 – http://snp.cshl.org/ 175 hits 12/31/02 • Other databases: http://wwwncbi.nlm.nih.gov/ Membrane Transporter Families • H+/Dipeptide Symporters – Proton-dept oligopeptide transporters (POT) – 70 cloned from nature; 2 from humans (PEPT1 and PEPT2) – Comparisons between worm, rat, mouse sequences identified two additional human POTs (hPHT1 and hPHT2) related to cloned rodent histidine/peptide transporters. • • • • • Facilitative Glucose Transporter Family Sodium/Glucose and Sodium/Nucleoside Amino Acid Transporters Sodium Neurotransmitter Symporters ABC Transporters Pharmacogenomics of Transport (IV) Expression Patterns using MicroArray Chips In vivo permeabilities measured in human duodenum using perfusion methods. In vitro permeabilities measured using Caco-2 cells. Expression patterns of 12,599 gene sequences analyzed using GeneChip (including 443 expected ADME genes). Sun, et al., 2002. Results: Functional Genomics 1) 37-47% of genes (26-44% of ADME genes) expressed in both cell types, but >1,000 sequences showed >5x variation between cell types. Variation >3x for >70 transporters detected. 2) In vivo/in vitro permeability correlated well (R2 = 85%) for passively absorbed drugs. 3) Variations (3-35x) above expected passive values were observed for mediated absorption and correlated with differences (2-595x) in gene expression. 4) Interhuman variability (3-294% of mean) for 31% of genes.