When Intermolecular Forces Rule in Chemistry and Biology PGCC CHM 101 Sinex Comparison of properties for the states of matter Property Solid Liquid Gas Volume Shape Relative density definite definite high definite indefinite ~1 g/mL indefinite indefinite very low Compressibility low-none low-none very high no close yes close yes far apart Fluidity/mobility Particle packing Diffusion rate Motion of particles Forces between particles very slow vibrations only IMF’s or bonding medium fast translation translation rotation rotation IMF’s only none if ideal gas The liquid state of matter Molecules are closely packed but free to move about randomly. There must be a force of attraction between the molecules. As molecules start to vaporize Molecules are great distances apart in gaseous state but free to move about randomly. What about in solids? Click here for a simulation of the states of matter Force-distance relationship For the Fattraction proportional to 1/distance molecules in contact with each other Relative attractive force 1 0.8 0.6 0.4 0.2 0 0 1 2 3 4 5 6 7 8 Relative molecular distance 9 10 Force-distance relationship Relative attractive force 1 1 0.8 0.6 0.4 0.2 0 0 1 2 3 4 5 6 7 8 Relative molecular distance 9 10 Force-distance relationship Relative attractive force 1 2 0.8 0.6 0.4 0.2 0 0 1 2 3 4 5 6 7 8 Relative molecular distance 9 10 Force-distance relationship Relative attractive force 1 3 0.8 0.6 0.4 0.2 0 0 1 2 3 4 5 6 7 8 Relative molecular distance 9 10 Force-distance relationship Relative attractive force 1 4 0.8 0.6 0.4 0.2 0 0 1 2 3 4 5 6 7 8 Relative molecular distance 9 10 Force-distance relationship Relative attractive force 1 5 0.8 0.6 Less than 20% the strength at 5 molecular distances 0.4 0.2 0 0 1 2 3 4 5 6 7 8 Relative molecular distance 9 10 Increasing strengths of IMF The strength of IMF’s • • • • • • • H-bonding (fixed distance ~200 pm) Ion-ion (1/r) Ion-dipole (1/r2) Inverse 3 Dipole-dipole (1/r ) functions of Ion-induced dipole (1/r4) distance 6 Dipole-induced dipole (1/r ) to various powers Induced dipole-induced dipole (1/r6) How do the other functions behave compared to 1/r? Click here for an interactive Excel spreadsheet to explore Hydrogen bonding in water O-H 96 pm covalent bond … H 186 pm O Click here for Chime activity Base Pairs in DNA: H-bonding AT pair GC pair Why not here? Click here for Chime structure of DNA Click here for Chime activity Lipid Bilayer: Induced Dipole – Induced Dipole Interaction for Hydrocarbon Chains phospholipid Click here for Chime activity What holds the iodine molecules together in solid iodine? 272 pm for I2 covalent bond 427 pm between two molecules in crystalline structure About half an iodine atom space between molecules Why do low molar mass substances that are non-polar molecules, such as H2, N2 O2, or CO2 have very low boiling points? Since they are non-polar, the IMF will be induced dipole- induced dipole, which is the weakest IMF. To get the molecules to interact with one another, the temperature needs to be decreased considerably (lower kinetic energy). For an ideal gas we assume there are no interactions between the atoms or molecules. Why is this a good assumption? Atoms or molecules in the gaseous state at room conditions are too far apart for IMF’s to operate. IMF’s are short range attractive forces. Attractive forces become important at low temperatures or high pressures. WHY? Some review questions 1. If a gas is compressed to high pressures, it will liquefy. Why? Click here for Chime structures to address the next two questions. 2. What holds a protein in the alphahelix form? 3. How about a beta-sheet protein? LESSON LEARNED All of biology is held together by chemistry! Go tell a biologist!!!!