AP Biology Assignment Sheet for Biochemistry Unit 2014 Chapters 1 – 5 and Chapter 8 pages 152 – 160 (8.4 - 8.5) Date Tues., 9/2 Class Discussion Topic/Activity Introduce Course Skim Chapter 1 in search of Big Ideas. Scientific Method What is a hypothesis? What is a prediction? Begin Antibiotic Resistance Activity Antibiotic Resistance Case Study Wed., 9/3 Quiz 1 Finish Antibiotic Resistance Case Study Activity Assignment Learning Targets (Unless otherwise noted assignments are due the next day class meets) Chapter 1: 1) I can skim this chapter and use it as a guide to help introduce myself to the 4 Big Ideas in AP Biology: A) Evolution, B) Energetics and Cellular Processes, C) Information and Genetics D) Interactions 2) I can summarize and apply all of the different parts of the scientific method. a) I can write down the steps of the scientific method b) I can explain the difference between a hypothesis and a prediction. c) I can describe what is meant by a controlled experiment 3) I can use scientific notation, and convert units within the metric system. 4) I can determine what type of graph to use for different data, and interpret the data from graphs. Chapter 2 1) I can identify the elements of life. 2) I can define the different types of chemical bonds and identify the role of electrons in each type of bond: a) I can distinguish between polar and non-polar covalent bonds. b) I can identify an ionic bond and explain how it works. c) I can identify a hydrogen bond and explain how it works. d) I can explain the relative strengths of each type of bond. Chapter3: 1) I can explain the significance of polar covalent and hydrogen bonds within and between water molecules. a) I can determine how many water molecules can bond with each other. b) I can describe the four emergent properties of water and explain how each property affects life. i) Adhesion and cohesion ii) Water moderates temperature (1) High specific heat (2) Evaporative cooling (3) High heat of vaporization iii) Water is a versatile solvent iv) Water is less dense when it freezes. 2) I can describe how acids and bases affect living organisms. a) I can determine the relationship between H+ and OH-in acidic, basic and neutral solutions. b) I can relate the relative amounts of H+ and OH- to the pH scale c) I can explain the logarithmic connection to the pH scale. d) I can explain what a buffer is, how it works, and how it affects living organisms. ● ● ● Read chapter 1 and 2 Notes on Chapter 1 and 2 Be able to correctly answer Student Study Guide Questions for each chapter ● Note: These first mastering biology assignments should be a review for most of you. Please let me know if you struggle with any parts of this. Videos to watch before class: Chapter 1: Biology Prezi Introduction to AP Biology Chapter 2 Chemical Bonds Prezi Atoms Water and Carbon Focus Questions: To be handed in tomorrow. 1. What are the 6 elements of life? 2. Which of the bonds involve sharing of electrons? Explain how the electrons are shared. 3. Which of the bonds involve attractions? Explain these attractions. 4. List the following bonds in order of their strength: ionic, polar covalent, non polar covalent, hydrogen bonds. . Thurs., 9/4 Review Focus Questions on Chemical Bonds And Properties of water QUIZ C3 Fri., 9/5 Transpiration: Stomata Counting Design Lab Work on Research Design Table Chapter 4: 1. I can explain how carbon’s electron configuration accounts for its ability to form complex molecules. a. I can describe how carbon skeletons may vary and explain how this variation contributes to the diversity and complexity of organic molecules. b. I can describe the basic structure of a hydrocarbon and explain why these molecules are hydrophobic. 2. I can identify the different functional groups and outline the chemical properties of the organic molecules in which they occur. Video to watch: Chapter 3: Water Acids Bases pH Crash course: Water- Liquid Awesome Biology Read chapters 3 · Read chapter 4: (focus on LT’s for this chapter only) Video: Crash Course That’s why carbon is a tramp Finish Research Design Table. Share your team’s table with me by midnight Saturday night. Share : Share your hypothesis with other groups. Have the other groups determine your prediction from your hypothesis Mon., 9/8 ● Use the Practice Data Analysis Activity to work on the Variable that is not being controlled in this lab Tues., 9/9 Set up Transpiration Lab. Discuss how data will be reported and recorded. Discuss How to Report Results ● ● Finish Transpiration Lab Practice Activity Use spreadsheet to develop a data table. Be sure this is ready before class tomorrow. Resolve any issues with your Experimental design and share it with me again after you have made the necessary changes. Video to watch: ● Molecules of Life ● Crash course Biological molecules: You are what you eat · Read chapter 5 Prezi Macromolecules Study for: Quiz on ch 1 - 4 Work together to consolidate your data tables into one data table for raw data and a second table for summary data. · Use the following document to help you with this task Wed., 9/10 Functional Group Pogil Model 2- Properties of Biological Molecules Quiz on chapters 1-4 Thurs., 9/11 Pattern Activity Review Focus Question Answers Review Organic Molecules Fri., 9/12 Finish Taking Transpiration Data Make calculations Complete Protein POGIL Chapter 5: 1) I can distinguish between monomers and polymers. a) I can explain the difference between condensation and hydrolysis reactions. 2) I can describe the monomers, structures and biological importance of the four classes of macromolecules. a) Carbohydrates: i) I can identify and describe the basic structure and functions of carbohydrates. ii) I can explain the nature of the bonding between carbohydrate subunits with respect to the secondary structure of the carbohydrate b) Lipids i) I can identify and describe the basic structure and functions of lipids. ii) I can relate the structure of a phospholipid to its function iii) I can relate the structure of a fatty acid to its function. iv) I can relate structures of steroids to their functions. c) Proteins i) I can identify and describe the basic structure and functions of proteins. ii) I can identify an amino acid. iii) I can explain how amino acids are grouped according the physical and chemical properties of their R groups. iv) I can describe the bonds of primary, secondary and tertiary protein structures. v) I can explain and identify all four levels of protein structure. vi) I can explain how pH, temperature, and salinity, affect protein structure and functions. d) Nucleic Acids i) I can identify the different components of a nucleotide and differentiate between a DNA and RNA nucleotide. ii) I can identify the 5’ and 3’ ends of nucleic acids iii) I can describe the structure of DNA and RNA and relate their structures to their functions iv) I can identify and explain the different bonds found in DNA and RNA v) I can explain complementary base pairing rules. Focus Questions: To Be Handed in 1. How can you tell if an organic molecule is: a. carbohydrate b. lipid c. protein d. nucleic acid 2. What are the four different types of amino acids (Fig 5.16)? How do these impact the structure and function of the protein? 3. How do pH, salinity and very warm temperatures denature proteins? 4. What are four differences between RNA and DNA? Video to watch: Enzymes · Read ch 8; Sections 8.4 – 8.5, enzyme material only! (pages 150 – 157) Chapter 8 (152 – 160): 1. I can describe the structure and explain the significance and functions of enzymes in biological systems a. I can describe why an investment of activation energy is necessary to initiate a spontaneous reaction. b. I can explain how enzymes speed up chemical reactions. c. I can explain the interactions between substrates and active sites of enzymes. d. I can explain how the following affect enzymatic function: Complete Transpiration lab : Submit the following to me as a individually: Raw data table Summary data table Graph Discussion Error Analysis i. Enzyme and substrate concentrations ii. pH, temperature and salinity iii. coenzymes iv. inhibition; competitive, non-competitive and allosteric v. cooperativity e. I can describe the role that enzymes play in feedback inhibition Mon., 9/15 Conclusion Use the following rubric to help with this analysis. Read Oxidation of Catechol lab. Understand the procedure for the blank and control group. Toothpickase and Enzymes ● ● Tues, 9/16 Enzyme Control Lab Begin Research Design table for Enzyme Lab Wed., 9/17 Continue/modify lab Use spreadsheet to make a raw data table for this lab. Thurs., 9/18 Hypothesis and Prediction Work on first part of rubric for poster. Use ● this rubric ● Mini poster template Fri., 9/19 Run Designed Enzyme Lab f. I can design a lab that quantifiably measures the effect of an environmental factor on enzymatic activity Understand means that you understand why you are adding the specific materials and amounts to each of these test groups. Also it means that you can predict what will happen in each of these test groups. Complete Enzyme Design Table. Share this document with me Each group needs to share a google doc that specifically lets me know the following: 1. Your class period 2. Your lab table # 3. Specific supplies you need beyond what you had on the control day. Work together to begin your mini poster Work on mini poster Mastering Biology Enzymes Mon 9/22 Build a protein model Study for chapter 5 quiz Tues 9/23 Chapter 5 quiz. Begin Enzyme POGIL Work on Poster Wed., 9/24 Enzyme POGIL Work on Poster Thurs., 9/25 poster sharing Modify posters. Final posters are due on Monday Fri., 9/26 Free response Practice . Study for test Article summary is due Mon 9/29 Biochemistry Unit Exam