AP® Biology Overview of AP® Biology Course Times: The AP® Biology course meets 5 days a week. Four days are 42-minute periods devoted to lecture, discussion and testing. The fifth day is an 88-minute double period for lab work. Therefore, this course meets for 6 periods a week for a total of 256 minutes a week, of which at least 88 are devoted to lab work. Course Summary: The AP® Biology course is built around the eight major themes of Biology: Science as a Process, Evolution, Energy Transfer, Continuity and Change, Relationship of Structure to Function, Regulation, Interdependence in Nature, and Science, Technology and Society. These themes will be integrated throughout the course. In any Biology course, and particularly in AP® Biology, the focus must be on evolution as the unifying principle underlying all topics. In every unit, we will relate the topic being studied to evolution – for example, how a process such as glycolysis unifies diverse groups of organisms and indicates common ancestry; how any process or structural adaptation allows an organism to survive to reproduce and pass its genes on to the next generation; how the incredible diversity observable in living things today is a product of evolution by natural selection. In AP® Biology, the students will perform the 12 AP® labs found in the AP® Biology Lab Manual for Students, and will also perform selected other labs as determined by the instructor. The time spent on lab work will allow the students to directly observe biological phenomena, while developing observation and data analysis skills. Lab activities are hands-on so that students can experience the process of science, not just the results. During lab activities, students will develop and test hypotheses, collect, analyze and present data and clearly present their results. Lab reports will include discussion of the aforementioned areas and also clearly presented tables and graphs. Textbook: Biology Seventh Edition, AP Edition, 2005 Campbell, Neil A., and Jane B. Reece Prentice Hall Upper Saddle River, NJ Lab Manual: AP Biology Lab Manual for Students College Board Timeline: Summer Homework Read Chapters 1 & 2, Test will be given on the second day of school Read Chapters 3 and 4 in preparation for the first week of school Unit 1 – Basic Chemistry, Biochemistry – 6 Days Chapters 3, 4, 5 Topics: • Polarity of water, and its importance to biological systems • Cohesion, Adhesion, High Specific Heat of water and the importance to biological systems • Acids, Bases and buffers • Carbon compounds – the tetravalence of carbon, leading to great molecular diversity in biomolecules • Functional groups and their importance in biomolecules • Monomers and Polymers, Dehydration synthesis and Hydrolysis • Carbohydrates, Lipids, Proteins, Nucleic Acids Labs/Activities • Protein Model Kits – These will allow students to effectively visualize the four levels of protein structure and how a protein’s native conformation is determined via interactions of the amino acid side chains. I use the kits made by 3D Molecular Design, and have modified a handout originally created by the Center for BioMolecular Modeling at the Milwaukee School of Engineering. I borrow these kits from the Princeton University Extension. Unit 2 – Cells – 11 Days Chapters 6, 7, 11 Topics • • • • • • Prokaryotes vs. Eukaryotes Evolution of Eukaryotes – Endosymbiont Hypothesis Eukaryotic Organelles – structure and function Structure of the Plasma Membrane, Selective Permeability Methods of Transport – diffusion, osmosis, facilitated diffusion, active transport, bulk transport Cell communication – signals and receptors, responses Labs/Activities • AP Lab 1 – Diffusion and Osmosis Unit 3 – Cellular Energetics – 14 Days Chapters 8, 9, 10 Topics • Metabolic Pathways – catabolism, anabolism • 1st and 2nd Law of Thermodynamics, Free Energy • ATP – structure and function • Enzymes – Activation Energy, Specificity • Enzyme Regulation – Inhibition, Allosteric Regulation • Redox reactions as they will be seen in respiration and photosynthesis • Cellular Respiration – Glycolysis, Citric Acid Cycle, Electron Transport Chain and Chemiosmosis • Fermentation • Photosynthesis – Light Reactions, Calvin Cycle, C4 and CAM plants • Conservation of the Glycolytic Process across Kingdoms – evidence for common ancestry Labs/Activities • AP Lab 2 – Enzyme Catalysis • Enzymes Everywhere – this simulation of enzyme action will demonstrate the factors affecting enzymes and will serve as an introduction the Enzyme Catalysis lab • • I have combined several enzyme simulations into this activity. This activity includes information and diagrams from the Biology Coloring Workbook by I. Edward Alcamo, Ph.D., Princeton Review Publishing, 1998. I also have modified the “Toothpickase” lab found at http://www.usask.ca/education/coursework/mcvittiej/bio30unit1/handouts/tooth pickase.htm, which in turn was modified from Toothpickase Biochemistry: Experiments with Enzyme Kinetics found at http://www.flinnsci.com/index. AP Lab 5 – Cell Respiration AP Lab 4 – Plant Pigments and Photosynthesis Unit 4 – DNA, RNA and Protein Synthesis – 6 Days Chapters 16, 17 Topics • Discoveries leading up to our present understanding of DNA – Griffith, Avery, Chargaff, Pauling, Franklin, Watson & Crick • DNA Structure and Replication • RNA Structure • Protein Synthesis – Transcription and Translation • RNA processing • Mutations and the basis for Natural Selection Labs/Activities • DNA Extraction • Protein Synthesis Modeling – Students will model the processes of transcription and translation, allowing them to visualize protein synthesis This activity combines information and diagrams from the Biology Coloring Workbook by I. Edward Alcamo, Ph.D., Princeton Review Publishing, 1998, with a simulation of protein synthesis that I designed. Unit 5 – Mitosis and Meiosis – 5 Days Chapters 12, 13 Topics • Cell Cycle and Mitosis – What happens in each stage • Chromosome structure • Control of the cell cycle • Sexual vs. Asexual Reproduction and Evolutionary Advantages • Sexual Life cycle • Stages of Meiosis • Events that lead to Genetic Variation in offspring • Evolutionary Importance of Genetic Variation Labs/Activities • AP Lab 3 – Mitosis and Meiosis Unit 6 – Genetics – 9 Days Chapters 14, 15 Topics • Mendel – Segregation, Independent Assortment • Punnett Squares and problem solving • Other inheritance patterns – Incomplete dominance, Multiple Alleles, Codominance, Epistasis, Pleiotropy, Sex-Linked inheritance, Sexinfluenced traits • Pedigree analysis and Genetic counseling • Morgan and Chromosome theory • Gene linkage and Gene mapping • Chromosomal mutations Labs/Activities • AP Lab 7 – Genetics of Organisms • Human Genetic Traits – Students will survey traits found in the class, construct and analyze a karyotype and perform pedigree analysis This is Lab 15 in Biology in the Laboratory, 3rd edition; Helms, Doris R., Carl W. Helms, Robert J. Kosinski, John R. Cummings; W.H. Freeman and Company, New York, NY, 1998 Unit 7 – Molecular Genetics – 6 Days Chapters 18, 19, 20 Topics • Viral Life cycles and Evolution • Viral diseases • Bacterial genomes and Evolution • Gene expression in Bacteria – operons • Eukaryotic DNA Packaging – nucleosomes and histones • Regulation of Gene Expression in Eukaryotes • DNA Technology – Restriction Enzymes and Recombinant DNA, PCR, Gel Electrophoresis • Practical Applications of DNA Technology Labs/Activities • pGLO Transformation – Students will transform E. coli with the pGLO plasmid, demonstrating molecular biology techniques • • I use the pGLO Bacterial Transformation Kit from Bio-Rad and the student materials they provide. AP Lab 6 – Molecular Biology Virtual Transgenic Flylab – online activity from the Howard Hughes Medical Institute – Students create virtual transgenic fruit flies and use them in virtual experiments on circadian rhythms http://www.hhmi.org/biointeractive/vlabs/transgenic_fly/ Unit 8 – Evolution – 12 Days Chapters 22, 23, 24 Topics • Foundations for Darwin’s work – Hutton, Lyell, Lamarck • Darwin’s Voyage – His specimens and observations • Evolution by Natural Selection • Evidence for Evolution – homologous structures, vestigial structures, biochemical and genetic similarities • Population Genetics – Gene pools, Allele frequencies • Hardy-Weinberg Equilibrium • Genetic Drift • Speciation – Reproductive Isolation, Adaptive Radiation Labs/Activities • AP Lab 8 – Population Genetics and Evolution Unit 9 – Phylogeny and Biological Diversity – 6 Days Chapters 25, 26 Topics • Phylogenies – Homologous and Analagous structures, Molecular homologies • Systematics, Cladistics, Phylogenetic Trees • Molecular Clocks and Gene Evolution • Early Life on Earth • Evolution of Prokaryotes and Eukaryotes • Evolution of Multicellularity Unit 10 – Plants – 12 Days Chapters 29, 30, 35, 36, 37, 38, 39 Topics • Adaptations that allowed Plants to colonize Land • Basic structures of Seed Plants • Basic plant structures – roots, stems, leaves • Transport in Plants – Transpiration • Factors necessary in Plant Nutrition • Angiosperm reproduction • Plant responses to hormones, light and other stimuli • Plant defenses Labs/Activities • AP Lab 9 – Transpiration Unit 11 – Animals – 7 Days Chapters 32, 33, 34, 40 Topics • Characteristics of Animals • Animal body plans and evolution thereof • Invertebrate Structure and Physiology – Sponges, Cnidarians, Molluscs, Annelids, Nematodes, Arthropods, Echinoderms • Vertebrate Structure and Physiology – Fish, Amphibians, Reptiles, Birds, Mammals • Animal Form and Function – Levels of Organization, Energy Use, Maintenance of Homeostasis Labs/Activities • Fetal Pig Dissection Unit 12 – Digestion, Circulation, Gas Exchange, Excretion – 9 Days Chapters 41, 42, 44 Topics • Digestive Organs and Processes • Circulatory Organs and Processes • Respiratory Organs and Processes • Excretory Organs and Processes • Evolution of these organs and processes through Natural Selection – for example, villi/microvilli allowing more efficient nutrient absorption would increase chances of survival and be selected for Labs/Activities • AP Lab 10 – Physiology of the Circulatory System • Sheep Heart Dissection Unit 13 – Immune Function, Hormonal Control – 6 Days Chapters 43, 45 Topics • Body Structures involved in Immunity • Humoral vs. Cell-Mediated Immunity • Hormonal regulation of bodily processes • Body Structures involved in Endocrine control Unit 14 – Reproduction and Development – 6 Days Chapters 46, 47, 21 Topics • Asexual vs. Sexual Reproduction • Reproductive Organs – Structure and Function • Fetal Development – Cleavage, Gastrulation, Organogenesis • Cell-Fate Determination during development • Hormonal Control of Development • Genetic Control of Development • Conservation of Developmental Genes and Processes across Species Unit 15 – Nervous Control, Musculoskeletal Function – 3 Days Chapters 48, 49 Topics • Nervous System Structures • Neural Communication – Action potential, neurotransmitters • Brain Anatomy and Function • Sensory Receptors • Musculoskeletal structures and functions Labs/Activities • Sheep Brain Dissection Unit 16 – Ecology – 17 Days Chapters 50, 51, 52, 53, 54, 55 Topics • Biotic vs. Abiotic factors • Environmental influences on organismal behavior patterns – Natural Selection for these behaviors • Population Growth – Exponential Growth vs. Logistic Growth • Regulation of Population Growth – Density Dependent and Density Independent Limiting Factors • Interactions within a Community – Trophic levels, Symbiosis, and how these interactions lead to evolution of all species involved • Nutrient Cycles • Energy flow within an Ecosystem • Human influences on the Environment • Societal and Environmental Concerns • Conservation efforts Labs/Activities • AP Lab 11 – Animal Behavior • AP Lab 12 – Dissolved Oxygen and Aquatic Primary Productivity • Human Population Ecology: Demography – Students analyze interment data from www.interment.net and make conclusions as to the changes in human life spans over the 20th century. • I found this activity at http://www.biologycorner.com/worksheets/demography.html The Natural Selection of Forks and Beans – Students will simulate the interactions between predators (plastic knives, forks and spoons) and prey (lima beans, pinto beans, and lentils). They will draw conclusions as to the selective advantage or disadvantage each form will encounter and make predictions as to the future of each population. I modified the activity “The Natural Selection of Forks and Beans” which can be found at http://www.accessexcellence.com/AE/ATG/data/released/0279MikeBasham/index.html