BLUEPRINT OF LIFE KEY WORDS AND TERMS USED IN THIS TOPIC As you study this topic you should write the definitions for the following syllabus terms. Term evolution natural selection palaeontology biogeography comparative embryology divergent evolution convergent evolution pedigrees monohybrid crosses Punnett squares homozygous heterozygous allele gene hybridisation dominant and recessive alleles phenotype genotype meiosis crossing over haploid diploid DNA gamete sex linkage co-dominance gene expression DNA replication mutation mutagen variation Punctuated Equilibrium artificial insemination artificial pollination cloning transgenic species genetic diversity polypeptide synthesis Definition BLUEPRINT OF LIFE SUMMARY OF THIS TOPIC The theories of evolution and natural selection, which have been supported by fossil evidence, biogeography, comparative embryology and anatomy and biochemistry, suggest that inherited characteristics must be able to vary in order to produce new species over time. The work of Gregor Mendel helped to improve our knowledge of the inheritance of these characteristics, although it was not formally recognised at the time. Further work by scientists such as Sutton, Boveri and Morgan helped to explain Mendel’s work by recognising that genes, the factors responsible for inheritance, are located on chromosomes. The role of gamete formation and sexual reproduction in producing offspring variability was also recognised, as was the influence of the environment on the expression of phenotypes. The determination of the structure of the DNA molecule by Watson, Crick, Franklin and Wilkins and the recognition of its role in polypeptide synthesis by Beadle and Tatum gave further insight into the mechanisms involved in inheritance. Other research has revealed that the structure of DNA can be changed, producing mutated alleles that can be inherited. Current reproductive technologies, such as artificial insemination, artificial pollination and cloning, and genetic engineering techniques such as recombinant DNA technology, make use of our current knowledge of genetics to the point where man is in fact capable of altering the path of evolution. BLUEPRINT OF LIFE MAJOR OBJECTIVES OF THIS TOPIC As indicated in the HSC Biology syllabus, the major outcomes of this topic include the ability to: describe how environmental changes and competition for resources can lead to a change in species explain how the theory of evolution is supported by palaeontology, biogeography, comparative embryology and biochemistry use Darwin and Wallace’s theory of evolution by natural selection to explain divergent and convergent evolution outline the historical development of evolutionary theories and describe how these have been affected by technological advances describe Mendel’s experiments and predict the outcomes of simple monohybrid crosses construct pedigrees and family trees to trace the inheritance of various characteristics understand the terms ‘homozygous’, ‘heterozygous’, ‘dominant’ and ‘recessive’ alleles , ‘genotype’ and ‘phenotype’ give a specific example of hybridisation within a species account for the fact that Mendel’s work was not initially recognised describe the chemical nature of genes and chromosomes and the roles of Sutton and Boveri in linking genes with chromosomes construct a model showing the different stages of meiosis describe the structure of the DNA molecule explain the role of gamete formation, crossing over and sexual reproduction in creating variability among offspring understand how co-dominance and sexlinkage do not produce typical Mendelian ratios among offspring outline Morgan’s contribution to our understanding of sex-linkage investigate ways in which the environment can affect phenotype describe DNA replication and the role of DNA in polypeptide synthesis outline Beadle and Tatum’s ‘one gene- one polypeptide’ hypothesis explain how mutations can occur and describe how they can result in altered DNA sequences and therefore altered genes describe how the concept of genetic variation supports Darwin’s model of natural selection compare the theory of punctuated equilibrium with Darwin’s theory of evolution outline the importance of the work of Watson, Crick. Franklin and Wilkins in determining the structure of DNA describe current reproductive technologies such as artificial insemination, artificial pollination, cloning and recombinant DNA technology and discuss their impact on the genetic diversity of species discuss any ethical issues arising from current reproductive technologies 1. Evidence of evolution suggests that the mechanisms of inheritance, accompanied by selection, allow changes over many generations ancestral giraffe, for example, was thought to have been able to compete more successfully for leaves high on trees because of its slightly longer neck. This animal survived to pass its ‘long neck’ gene on to its offspring, which could in turn compete more successfully with shorter-necked animals for food, and eventually a new long-necked species of giraffes arose. Environmental changes, competition and evolution The mechanism for evolution is known as natural selection. It was proposed in 1858 by Darwin and Wallace. This theory states that within a population, physical and chemical environmental changes and competition within a species can act as selecting agents for favourable genetic characteristics. Organisms possessing these favourable characteristics survive, passing them on to their offspring. Eventually, these characteristics predominate, resulting in a change in the population. For natural selection to occur, there must first be genetic variation within a species. An example of physical environmental changes acting as a selecting agent can be seen in the changes in the peppered moth in industrial England in the late nineteenth century. Dark coloured moths tended to survive to maturity when the environment was polluted because they were camouflaged. The gene for dark colour was passed on to the next generations, while the gene for light colour almost disappeared because light coloured moths were spotted and eaten by birds before they could reproduce. With the reduction of pollution in recent years, the gene for light-coloured moths is now predominating while the gene for dark colouring is no longer favourable for survival. An example of a population change brought about by a chemical change in the environment is the action of the insecticide DDT on mosquitoes. This insecticide initially killed most of the mosquitoes it was sprayed upon, but among the mosquitoes that survived were some that did so because of the possession of a ‘DDT resistant’ gene. This favourable gene was passed on to the offspring of the survivors, eventually resulting in a population of mosquitoes with a genetic resistance to this insecticide. DDT is now only effective in high concentrations. Competition within a species may also select for particular favourable characteristics which could in turn result in population changes over time. The As a requirement of this topic, you are expected to perform a first hand investigation to model natural selection Cut-out models of dark and light species of the Peppered moth could be placed first on dark coloured cloth to represent polluted surroundings and then on light coloured cloth to represent unpolluted surroundings. A student could represent a predatory bird by randomly selecting the first moths they can see clearly against each background. Numbers of each moth type ‘preyed’ upon could be recorded in each case. Palaeontological (fossil) evidence for evolution The theory of evolution states that the many different species alive today have developed from a simple common ancestor or ancestors. The fossil record is useful in providing some of the evidence for this gradual change from simple to more complex life forms. A fossil is defined as any trace of past life and thus not only the actual remains are regarded as fossils, but also things such as footprints, burrows, moulds, casts and relics of animal droppings. One of the main ways fossils provide evidence for evolution is the fact that the fossils of simpler organisms have been found in the oldest rocks while those of more complex organisms are only found in more recent rock strata, indicating the development of life on earth as being a gradual unfolding from simpler to more advanced organisms. One of the major trends revealed by fossils has been the evolution of life from aquatic to terrestrial forms in both the plant and animal kingdom. The development of vertebrates, for instance, appears to originate with fish and then progresses to amphibians, reptiles, birds and finally mammals. Similarly, the oldest plants would seem to be those of algae, with subsequent land plants progressing through the partly water dependent mosses, ferns and seed ferns to the more terrestrially adapted conifers and flowering plants. The evolution of certain animal species alive today is particularly well recorded by fossil evidence; examples include the present day horse and elephant. Fossils of ancestors of the modern horse reveal its evolution from the tiny ‘dawn horse’, Eohippus, over 50 million years ago, through successively larger animals to its present form. Accompanying these changes in size have also been changes in the teeth and feet of the horse; this is thought to be a result of the change in the habitat of these animals over the years from forest to grassland environments. The evolutionary history of the modern elephant is also well represented by fossils of ancestral forms dating back to more than 45 million years ago. Fig.2-3 A Crossopterygian fish A transitional form between reptiles and mammals may well have been the therapsid, a reptile which possessed a mammal-like jawbone and skeletal structure. In the plant kingdom, fossils of ancient ‘seed-ferns’, Fig. 2-4 below, reveal them to have been intermediate in form between ferns and seedbearing conifers, thus supporting the theory that conifers evolved from ferns. Fig. 2-4 A seed fern Fig. 2-1 The evolution of the foot of the horse reflected a change in habitat from softer to harder ground and an increase in the size of the animal. Fossils of ‘transitional’ organisms also help to support the proposed sequence of evolution. The discovery of fossils of Archaeopteryx, shown in Fig. 2-2 in which bird-like wings and tail feathers and reptilian teeth and skeletal structure are both apparent, suggests that birds may have evolved from reptiles. Fig.2-2 Archaeopteryx In a similar manner, fossils of the Crossopterygian fish, an ancient lungfish capable of obtaining oxygen from the air and with lobed (jointed) fins, tend to suggest that this animal (shown in Fig. 2-3) had characteristics of both fish and reptiles. THINK!!! Can you re-write the plants below in the correct order in which they appeared in the fossil record? flowering plants, mosses, conifers, algae, ferns Biogeographical evidence for evolution Biogeography is the distribution of plants and animals in various regions of the world. The biogeography of unique species of animals such as the marsupials in Australia helps to provide evidence that organisms have become adapted to their own particular habitat in the process of natural selection. Although some marsupials are also present in South America, Australian marsupials such as the kangaroo, platypus and echidna have evolved as an adaptation to their own particular ecological niche since the continents of Gondwanaland moved apart 136 million years ago. In his travels, Darwin also noted evolution occurring independently due to geographic isolation, especially in areas such as the Galapagos islands. The biogeography of flightless birds (ratites) also provides evidence for evolution. Originally, an ancestral bird existed in Gondwanaland, but as the continents drifted apart, a variety of forms developed. Examples include the Cassowary and Emu in Australia, the ostrich in Africa, the rhea in South America and the kiwi in New Zealand. A comparison of the DNA among these species suggests a common ancestor, but their different forms and their biogeography again imply that they evolved to become adapted to their own specific niches. The fact that members of the Proteaceae family (which includes waratahs and proteas) are found in both Australia and South Africa helps to support the idea that the land masses of the southern hemisphere were once connected to form a super land mass called Gondwanaland. As a requirement of this topic, you need to prepare a case study to show how an environmental change can lead to a change in species. The evolution of the horse over the last 60 million years is a good example of this. The changes in this animal over time were accompanied by changes in its environment from swampy forests to dry grasslands. As the surroundings changed, those with better adaptations survived: smaller animals with 3-4 toes and teeth without large grinding surfaces thrived in the forests of the Eocene period while larger animals resembling today’s horses predominated in the grasslands of the more recent Pliocene period. The possession of molar teeth that were adapted for grinding grass was a definite advantage in grassland environments. In addition, a reduced number of toes meant that the increased weight of these larger horses could be centred more effectively. This also enabled the animals to run faster over the hard ground when being chased by predators. Table 2-1 outlines the evolution of the horse, as indicated by fossil evidence. THINK!!! Modern day horses also have eyes which are positioned higher up their their heads. What adaptive advantage would this have? Era and type of environment Name of genus Structural features/ adaptations Eocene period (60 million years ago) swampy forests Hyracotherium ( Eohippus) 3 toes on hind feet, 4 toes on front feet. Only a small grinding area on teeth surfaces. Oligocene period (40 million years ago) -Forests and some grassland Mesohippus Larger than Hyracotherium, middle digit of each foot wider and weight bearing; other two digits reduced in size, molars capable of grinding Miocene period (26 million years ago) - mainly grassland Merychippus Eyes higher in the head, larger than Mesohippus, second and third toes reduced even more in size, molars with large grinding surface. Pliocene period (7 million years ago) - dry grasslasnd Pliohippus Second and third toes absent, large grinding surface on molars, almost as big as modern horse. Pleistocene period (1.5 million years ago to present) - dry grassland Equus Single toe surrounded by protective hoof, large grinding molars, larger than all its ancestors. Table 2-1 The evolution of the horse Comparative embryology and anatomy as evidence for evolution The theory of evolution states that organisms have arisen over time from common ancestors .If this is the case then we would expect to find similarities among groups of descendant organisms today. This is indeed the case when certain structural features of the vertebrates are examined. Firstly, when vertebrate embryos are compared, it is found that there is a strong similarity between fish, amphibians, reptiles, birds and mammals, especially in the very early stages of development. All vertebrate embryos possess gill pouches but it is only in fish that these later develop into true gills. Secondly, a comparison of the anatomy of the forelimbs of vertebrates reveals a similarity that suggests they have evolved from a common origin. Characteristics such as this are known as ‘homologous structures’. An observation of the bone structure of the bird wing, the bat wing, the whale fin and the forelimbs of reptiles and mammals indicates that they are all composed of the same fundamental units. Each consists of five finger-like bones connected to a modified radius, ulna and shoulder blade, as shown below. This feature is often referred to as the ‘pentadactyl limb’. As a requirement of this topic, you are expected to observe, analyse and compare the structure of a range of vertebrate forelimbs. Fig.2-5, below, shows some modifications of the pentadactyl limb in five vertebrate species a) Fin of Crossopterygian fish (a primitive lungfish) b) Whale fin c) Bird wing d) Bat wing e) Human forearm Fig. 2-5 Modifications of the pentadactyl limb in five vertebrate species Biochemical similarities as evidence for evolution The fact that the basic chemistry of the cells of all living things is similar provides further evidence of common ancestry; all cells contain proteins, carbohydrates, fats, water, DNA and RNA. In addition, all vertebrates possess haemoglobin and can manufacture hormones. A more revealing method of comparing the evolutionary relationship between two species is to observe similarities in the number and type of proteins in each. The longer groups of organisms have been separated from each other over time, the greater the protein difference will be; it is not surprising, then, to find that a comparison between humans and turtles reveals 15 different amino acids in the cytochrome C protein whereas there is only a difference of one amino acid between humans and monkeys, as shown in table 2-2. Related to this is the fact that the more closely related one organism is to another, the more similar their DNA will be. Scientists can compare the proteins of different organisms by mixing the blood of each. The amount of antibody production that occurs is an indication of the genetic difference between the two species. Human Duck Turtle Yeast Horse Monkey Cow Dog Kangaroo Human 0 11 15 45 12 1 10 11 10 Duck Turtle Yeast Horse Monkey Cow Dog Kangaroo 0 7 46 10 10 8 8 10 0 49 11 14 9 9 11 0 46 45 45 45 46 0 11 3 6 7 0 9 10 11 0 3 6 0 7 0 Table 2-2 The number of different amino acids in the cytochrome C protein in different organisms Type of Galapagos Island Finch woodpecker finch THINK!! Based on the table above, which organism is the least closely related to humans? How natural selection and isolation accounts for divergent and convergent evolution Darwin and Wallace stated that within any population of a species, there exists genetic variation. Divergent evolution arises when members of a species develop different adaptations in different environments. Examples of divergent evolution include the finches of the Galapagos islands, as shown in Fig, 2-6. Darwin noticed that the 14 different species of this bird had developed different diets and beaks on each island. In order for completely new species to have developed from the original finches on the mainland, genetic isolation must have occurred. Divergent evolution can also be seen in the kangaroo family, with the tree kangaroo evolving in rainforests and the rat kangaroo evolving in deserts, for example. Convergent evolution occurs when different species develop similar adaptations in similar environmental niches. Examples include the shark, penguin, dolphin and turtle, which all possess streamlined bodies, flippers or fins. During this topic you are required to use a named example to analyse how advances in technology have changed scientific thinking about evolutionary relationships Diet and beak type insects; strong bill that can bore into wood warbler finch small insects; curved beak ground finch seeds; small beak cactus finch nectar; straight beak and tongue tree finch buds, berries or insects; beak strongly curved Fig. 2-6 Divergent evolution in the Galapagos Islands finches DNA hybridisation, a technique in which ‘hybrid’ DNA molecules are produced with one strand from each of two different organisms, is a modern technology that has changed scientific thinking about some evolutionary relationships. The degree of matching between base pairs from each strand indicates the similarity in amino acid sequences between the two species. Recent DNA hybridisation studies have revealed, for instance, that the giant panda is more closely related to bears than raccoons, and that humans bear the closest genetic resemblance to chimpanzees, not gorillas. The historical development of theories of evolution Originally, the idea of ‘Special Creation’, endorsed by the church, was generally accepted by the masses. This theory stated that all living things were the products of a divine creation and that most were created for the service of mankind. Among those to first question this was Georges Buffon (1707-1788), who suggested that species might undergo some changes in the course of time by a process of ‘degeneration’. James Hutton (1726-1797) proposed that the earth had been formed gradually over many years, and the geologist Charles Lyell (1797-1875) produced evidence that the earth had a long history. This helped to provide enough time for the evolutionary changes proposed by Darwin and Wallace to have taken place. In 1858 Both Darwin and Wallace suggested that the many species on earth have evolved from a common ancestor by the process of natural selection. This theory, although generating much controversy, was more widely accepted than Lamarck’s (1744-1829) idea that evolution occurred through the inheritance of acquired characteristics. 2. Gregor Mendel’s experiments helped advance our knowledge of the inheritance of characteristics Mendel’s experiments The work of the Austrian monk, Gregor Mendel, has helped us to understand how characteristics in living things are inherited, and, in certain cases, to predict the genetic and physical outcomes of sexual reproduction. Mendel did not know of the existence of genes, but his experiments (presented in 1865 but mostly ignored) led him to conclude that the factors responsible for the inheritance of characteristics occurred as discrete units, and that they were inherited in pairs with one factor coming from each parent. This idea is known as Mendel’s first law, or the principle of segregation, and we now know that the factors he was referring to are genes. Each alternate member of a gene pair is known as an ‘allele’, and these alleles separate from each other during gamete formation. Mendel chose to investigate the inheritance of particular ‘traits’ (characteristics) in pea plants. These plants were easy to grow and reproduced quickly, with distinctive traits that could be easily tested such as flower colour and seed form. Moreover, they were not easily cross pollinated, so allowing Mendel to carry out his experiments in a controlled manner. Mendel pollinated the plants himself, and initially tested the inheritance of one particular trait at a time; these traits included seed form, flower colour, seed colour, stem length, pod form and pod colour. Each trait existed as two alternate forms so that with flower colour, for instance, purple flowers or white flowers were produced by the plants. With each of these experiments he found that when pure breeding forms were crossed, one of the alternate traits completely disappeared in the F1 or first generation but reappeared in the offspring whenever two F1 plants were crossed. Hence, when flower colour was the trait investigated, Mendel’s results were as follows: Parents: Purple flowers x white flowers F1(first) generation: All purple flowered ↓ Two F1 plants crossed F2(2nd) generation: ↓ 3 purple flowered: 1 white flowered ↓ ↓ Fig. 2-7 The outcome of crossing pure breeding purple with pure breeding white pea flowers In this particular example, Mendel called the purple colour the ‘dominant’ trait because it was the only factor expressed in the F1 generation, and the white colour the ‘recessive’ trait because it disappeared or receded for a generation. He concluded that the factor (gene) for white colouring must have been present all the time and that when it combined with the factor (gene) for purple it was not expressed. We can predict the outcome of the monohybrid cross (i.e. involving the inheritance of one pair of alternate characteristics only) above using a ‘Punnett square’, as shown below. Gametes ( i.e. alleles present) p p P Pp Pp gametes of parent 2 P produced when two heterozygous black guinea pigs are mated. Answer A Punnett square can be drawn up, as shown, and the resulting genotypes can be filled in. gametes of parent 1 Pp Pp genotypes of offspring The genotype of an individual is its genetic makeup, hence all the offspring above are of genotype Pp. The phenotype of an individual is its outward appearance. In this case, the phenotype of all offspring would be purple coloured flowers, because the purple allele (P) is dominant to the white allele (p). Gametes B b BB Bb B Bb bb b From the Punnett square we can see that the genotypes of the offspring are BB, Bb, Bb and bb. Their corresponding phenotypes are black, black, black and white, or 3 black: 1 white. ii) Two purple flowering pea plants were crossed. All the offspring plants produced purple flowers. However, when these plants were crossed, there were some white flowering plants in the F2 generation. Explain why it is impossible that each of the original plants was homozygous for purple flowers. Use diagrams where necessary. Answer Pure breeding plants possess two identical alleles and are referred to as being ‘homozygous’. Examples are PP,pp, WW,ww etc.Hybrid individuals, that is, individuals carrying a dominant and a recessive gene, are referred to as ‘heterozygous’. Examples would be Pp, Ww etc. One of the original plants must have been heterozygous because the two F1 plants that were crossed needed to be heterozygous to produce a white flowering offspring. i.e. a) Original parents crossed: PP x Pp ↓ F1: PP, Pp, PP, Pp b) Heterozygous members of F1 THINK!!! Circle the homozygous genotypes from the ones listed below: pp, Pp, Bb, BB, ww, Ww, aa, AA. Which of these are homozygous and dominant? crossed: F2: As a requirement of this topic you need to be able to solve problems involving monohybrid crosses using Punnett squares or other appropriate techniques. Sample problems i) The gene for black hair colour in guinea pigs (B) is dominant to the gene for white hair (b). Determine the genotypes and phenotypes Pp x Pp ↓ PP, Pp, Pp, pp As a requirement of this topic you need to be able to construct pedigrees or family trees, trace the inheritance of selected characteristics and discuss their current use. In cases where genetic breeding experiments are not possible or convenient, pedigrees of known relatives can be drawn up to study the inheritance of a particular trait over the generations. Symbols often used are shown below. = normal female = affected female = normal male = affected male marriage line Ι offspring line ΙΙ Fig. 2-8 A typical pedigree Sample problem Cocker spaniels have either black or red coats. Use the pedigree below to answer the following questions. The trait for red coat is shaded. 1 3 2 4 5 6 7 8 a) Is the characteristic for red coat colour dominant or recessive? Explain. b) Determine the phenotypes and genotypes for individuals 1, 3 and 6. c) What possible genotypes could cocker spaniel 8 be? Explain. Answer a) Recessive, because if individuals 5 and 6 were recessive they would only produce recessive offspring, and it can be seen that their offspring display both the dominant and recessive phenotypes. b) 1 = Bb; 3 = Bb; 6 = Bb c) Cocker spaniel 8 could be either Bb or BB because its parents are both Bb; BB and Bb are thus both possible when 5 and 6 are crossed. Why Mendel’s work was not initially recognised Mendel’s two laws, the principle of segregation and the law of independent assortment (which states that during meiosis either allele of a gene pair can combine with either allele of another gene pair), are still used today to explain the behaviour of genes in reproduction. Despite this, his 1865 paper had little impact until the early twentieth century. One reason for this may have been that he was not a high profile member of the scientific community in Austria at the time; also, scientific developments as a whole were not encouraged during this period. In addition, Mendel’s findings, because they were unprecedented, were not generally understood by other members of the scientific community. Hybridisation within a species Hybridisation involves crossing two genetically different individuals to produce offspring with more favourable characteristics than the parent plants. These superior characteristics among the offspring are often known as ‘hybrid vigour’, and are a result of their heterozygous nature. Crop plants that have been improved by hybridisation include corn, potatoes and tomatoes. Improved qualities include disease resistance and better nutritional quality. To produce hybrid corn plants, pairs of ‘inbred’ strains are crossed: each is pure breeding for a different allele of the same trait. The offspring of these crosses are then crossed, producing a plant that is heterozygous for one or more characteristics. In 1970, 15% of the US corn crop was destroyed by leaf blight. A similar situation occurred in the Irish potato famine of 1846 where the bulk of the potato crop was wiped out by a fungal attack. This was due to the genetic uniformity of the plants, which had been hybridised to produce greater yields, but not disease resistance. It is therefore now commonly recognised that samples of original ‘wild stock’ plants should be retained and crossed with modern hybrids to maintain genetic diversity within these particular species. During this topic you are required to construct a model that demonstrates meiosis and the processes of crossing over, segregation of chromosomes and the production of haploid gametes. Modelling clay could be used to reconstruct each stage of meiosis, using a diagram similar to that shown in Fig. 2-9. Meiosis is the term given to describe the cell division that occurs in the sex organs of animals and plants to produce haploid (half the normal chromosome number) gametes from diploid (the full chromosome number) body cells. Notice that in Metaphase 1, homologous chromosomes have paired up with each other and exchange genetic material by ‘crossing over’. In anaphase 1 members of each homologous pair separate from each other and in anaphase 2 their chromatids separate. The resulting gametes, seen in Telophase 2, have half the original chromosome number. 3. Chromosomal structure provides the key to inheritance Sutton, Boveri and the importance of chromosomes Theodore Boveri, a microbiologist who studied meiosis in sea urchins, and William Sutton, a scientist who studied reproduction in grasshoppers, proposed the “Chromosome theory of inheritance’ in1902.This theory stated that a) chromosomes occur in pairs in the body cells of organisms; b) each member of a chromosome pair separates into separate gametes during meiosis; c) new pairs of chromosomes form when gametes unite in fertilization and d) hundreds of genes are located on each chromosome. They arrived at the last part of this theory by noticing that the behaviour of chromosomes during meiosis was similar to the way Mendel proposed his ‘factors’(genes) to behave. As a result, they concluded that genes must be located on chromosomes and that since there are more inheritable characteristics in an organism than there are chromosomes, each chromosome must have many genes located on it. Sutton referred to similar chromosomes within a pair as ‘homologous’ chromosomes Fig. 2-9 The stages of meiosis DNA and the chemical nature of chromosomes and genes Chromosomes occur in the body cells and gametes of organisms. They consist of a DNA molecule coiled around a protein core. The protein component of chromosomes makes up about 60% of their mass, while the DNA component constitutes about 40%. The DNA molecule, first described by Watson and Crick in the early 1950s, forms the shape of a double helix. This looks somewhat like a ladder that has been twisted, with the ‘uprights’ consisting of deoxyribose sugars and phosphate groups. The ‘rungs’, which are attached to the sugar units, are made up of nitrogen bases. There are four of these bases: adenine, thymine, cytosine and guanine. Thymine will only bond with adenine and guanine will only bond with cytosine. Each subunit of a DNA molecule is called a nucleotide, and consists of a sugar, a phosphate and a base, as shown below. phosphate nitrogen base sugar Fig. 2-10 A nucleotide The diagram below of a simple model of a DNA molecule shows the complementary base pairs and alternating sugar and phosphate groups along the ‘uprights’ of the molecule. T A = adenine C =cytosine T = thymine G = guanine Organisms that reproduce by mitosis alone will always produce identical offspring. Meiosis, on the other hand, ensures variability among the offspring in several ways: i) When the gametes of both parents unite, the resulting diploid zygote will carry genes from both parents and will not be identical to either parent; ii) According to the chromosome theory and Mendel’s law of independent assortment, during meiosis each member of a homologous chromosome pair separates independently of members of other homologous pairs. Because these chromosomes are carrying genes it means there will be a greater range of possible gene combinations in the gametes and thus in the zygotes produced after fertilization; iii) During the first metaphase in meiosis, homologous chromosomes may exchange portions of their chromatids. This process of ‘crossing over’ will also inevitably result in the exchenge of genetic material between these chromosomes. The result is that there will be a greater range of gene combinations in the gametes, thus ultimately ensuring more variety in the offspring after sexual reproduction takes place. Fig 2-12, below, shows a pair of homologous chromosomes undergoing crossing over. It can be seen that the chromosomes in the gametes contain genetic material (alleles B , b, T and t) that has been ‘swapped’ around in the crossing over process. A G A Gamete formation, sexual reproduction and variability of offspring C sugar T phosphate C G Fig. 2-11 A section of a DNA molecule Fig. 2-12 Crossing over during meiosis Genetic variability greatly improves the survival chances of a particular species because unfavourable characteristics are not likely to be duplicated throughout the whole population. With greater genetic variation there is also the possibility of better adaptations arising through natural selection if, for example, the environment changes. crossed with a pure breeding red cow. The result is a calf with both red and white hairs in its coat. In other cases, the characteristics of both genes blend, because neither is completely dominant over the other. This is known as ‘incomplete dominance’ and occurs, for instance, in snapdragons. In these flowers, the presence of a gene for red colouring and the presence of a gene for white colouring results in a pink flower, as shown below. Sex linkage and co-dominance Mendel’s predicted monohybrid and dihybrid ratios are not adhered to when the results of some crosses are examined. One situation where this is the case is found in ‘sex linkage’. This is where genes for certain characteristics are located on the ‘X’ chromosome, one of the two sex chromosomes present in most organisms. Females possess two X chromosomes but males possess an X and a Y chromosome. Because the Y chromosome carries very little genetic information, if a male inherits a recessive gene on his X chromosome, he will exhibit that characteristic because there is no corresponding dominant gene present to mask it. Hence haemophilia and colour blindness, for instance, which are caused by recessive genes carried on the X chromosome, are diseases more commonly found in males. T.H. Morgan first discovered the phenomenon of sex linkage when studying inheritance in fruit flies. He concluded that the gene for white eyes was recessive and carried on the X chromosome. As a result, when a white eyed female was crossed with a red eyed male, the following outcome occurred: White eyed female x Red eyed male X wX w XWY ↓ XWXw, XWXw 2 red eyed females, XwY, X wY 2 white eyed males, Another situation where Mendel’s predicted outcomes does not occur involves crosses where one gene does not completely dominate the other. In some cases, both genes are expressed in the individual carrying them. This is known as ‘codominance’ and an example includes coat colour in cows. Red and white genes are both expressed in the offspring when a pure breeding red bull is Red flowers x White flowers RR WW ↓ All pink flowers RW, RW, RW, RW As a requirement of this topic, you are expected to solve problems involving codominance and sex linkage. Sample problems i) In humans, colour-blindness is caused by a sex-linked recessive gene. What are the genotypes and phenotypes of the offspring in the following crosses? a) A normal man x a colour-blind woman b) A normal woman who has a colour-blind father x a normal man Answer a) The cross involved is Offspring: genotypes XCY x XcXc ↓ XCXc, XCXc, XcY, XcY Phenotypes: 2 normal females, 2 colour blind males b) The cross involved is XCXc x XCY ↓ C C Offspring X X , XCY, XCXc, XcY genotypes: Phenotypes: normal female, normal male, normal female, colour blind male ii) In cattle, the two alleles for coat colour are codominant. When genes for white colouring and genes for red colouring occur together, the resulting colour is known as ‘roan’. Work out the genotypes and phenotypes produced in the offspring when a roan cow is crossed with a white bull. Answer The cross involved isRW x WW ↓ RW, RW, WW, WW (2 roan, 2 white) iii) a) How would you explain the fact that when red flowered and white flowered snapdragons are crossed their offspring always produce pink flowers? b) What will be the phenotypes of the offspring produced when two pink flowers are crossed? in features such as growth rates, habit, flowering and fruiting. The water buttercup’s leaves (Ranunculus peltatus) express their genes differently, depending on whether they are submerged or above the water, as shown in Fig. 213, below. Himalayan rabbits and Siamese cats display different markings on their coats, depending on the surrounding temperatures. Similarly, the colouring of Mexican fighting fish is partly determined by genes, and partly by the presence of another fish. In addition, studies of identical twins have shown that although they are genetically identical, if they are raised in different environments their phenotypes may differ (in, for example, their height, health etc.). floating leaves Answer a) This must be a situation in which incomplete dominance is occurring: neither allele dominates the other, resulting in the characteristics of both alleles blending. b) RW x RW ↓ RR, RW, RW, WW 1 red flowered plant, 2 pink flowered plants, 1 white flowered plant THINK!!! Morgan initially crossed a white eyed male fruit fly (XwY) with a red eyed female (XWXW) to produce offspring which all had red eyes (XWXw, XWXw, XWY, XWY). Explain why a cross between a male and a female of these offspring could never produce a white eyed female, and thus would not follow Mendel’s ratios. Gene expression and the environment The characteristics of an individual are determined both by genes and by the influence of the environment on the expression of these genes. This can be seen when essential plant requirements such as nutrients, moisture, sunlight and temperature are varied; experimental plants will display differences submerged leaves Fig. 2-13 Gene expression in the water buttercup As a requirement of this topic, you are expected to perform a first-hand investigation to demonstrate the effect of environment on phenotype Data on this subject usually involves comparisons involving sets of twins; when, for instance, a disease is more commonly shared between identical twins than fraternal twins, the difference is likely to be caused by genetic rather than environmental factors. Another method is to compare characteristics of identical twins raised together with these characteristics in identical twins which have been raised apart. The table below, for instance, suggests that the environment does have an effect on IQ and height. Characteristic studied Difference in identical twins raised together IQ Height 3.2% 2% Difference in identical twins raised apart 6.9% 2.7 % Table 2-3 The effect of environment on IQ and height in identical twins 4. The structure of DNA can be changed and such changes may be reflected in the phenotype of the affected organism DNA replication functions. Each of the polypeptide molecules are in turn composed of a chain of amino acids, and the sequence of these depends on the sequence of bases in the DNA molecule. The segment of a DNA molecule that codes for a particular polypeptide is known as a gene. The stages involved in polypeptide synthesis are as follows: DNA replicates during the resting stage (interphase) between nuclear divisions in mitosis and meiosis. This process involves the DNA ‘unzipping’ to form two separate strands. As this happens, nucleotides, consisting of a sugar, phosphate and complementary nitrogen base attach themselves to the single parent strands at the appropriate bases (i.e. adenine with thymine, guanine with cytosine). The enzyme, DNA polymerase is required for this process. THINK!!! In the diagram below showing DNA replication, can you name the six bases on the two newly formed strands? newly formed strands DNA in the nucleus ‘unzips’, exposing unpaired nitrogen bases. Messenger RNA copies the code on a single stranded DNA molecule in the nucleus. This process is known as transcription. RNA is single stranded and contains a ribose instead of a deoxyribose sugar. The messenger RNA moves from the nucleus and attaches itself to the small subunit of a ribosome in the cytoplasm. Transfer RNA molecules carry a ‘triplet’ of bases at one end. Each triplet codes for a particular amino acid, and these are picked up by the tRNA molecules in the cytoplasm. The transfer RNA molecules match up with their complementary base triplets on the messenger RNA. Further amino acids, carried by their transfer RNAs, become attached to the messenger RNA and are joined to each other by peptide bonds. Eventually, a chain of amino acids is formed. This process is known as translation. Fig 2-14 shows a diagram of polypeptide synthesis parent strands DNA and polypeptide synthesis The particular base sequence of each DNA molecule determines which polypaptides are formed in the cells of organisms. Polypeptides are the basic units of proteins and it is the proteins in a cell thast essentially control all its metabolic As a requirement of this topic, you need to develop a simple model for polypeptide synthesis Coloured pegs representing base pairs and wool could be used to represent a DNA molecule. The pegs are then unclipped and complementary base pegs clipped on to the single parent strands to represent transcription on to mRNA. Note that on your mRNA a new coloured peg representing uracil must be used to replace thymine. ‘Triplets’ of appropriately coloured pegs are threaded together to represent transfer RNA, and the amino acid corresponding to this triplet is taped to the tRNA. To represent transcription, triplets corresponding to the base sequence on your mRNA can then be lined up along the mRNA to form a sequence of amino acids. ii) aa mRNA i) iii) DNA aa Fig. 2-14 Polypeptide synthesis. In i), the DNA code is being copied by mRNA; in ii), mRNA moves to a ribosome in the cytoplasm; in iii), tRNA carries amino acids to the ribosome where the base triplets match uphere, the amino acids will link together to form a polypeptide . As a requirement of this topic, you need to outline the evidence that led to Beadle and Tatum’s ‘one gene-one ptotein’ hypothesis and to explain why this was altered to the ‘one gene-one polypeptide’ hypothesis. In 1941 these two American biochemists attempted to alter or inactivate specific genes in the bread mould Neurospora so that they could observe whether this produced any changes in the organism’s cells. After exposing the mould to Xrays they found that some of the offspring could not produce the amino acid arginine. Further investigation revealed that each of four strains of mould failed to produce a separate enzyme needed for arginine synthesis. They concluded that for each defective enzyme ther was one gene on one specific area of a chromosome that had been mutated by irradiation. Their’one gene-one enzyme/protein’ theory has been re-named the ‘one gene-one polypeptide’ theory because some proteins are made of more than one polypeptide chain. Mutations in DNA and the formation of new alleles A mutation is a change in a gene. It usually occurs during DNA replication. Mutations are inherited when they occur in a gamete, but not when they occur in a normal body cell. Favourable mutations can result in more variation within a population. Factors that cause mutations are known as mutagens. They include certain types of radiation and chemicals. Spontaneous mutations are called background mutations. Some mutations occur during cell division. Down’s syndrome, for instance, results from the inheritance of an extra chromosome 21 and is the result of chromosome pairs failing to separate during meiosis. Another situation, in which chromosomes fail to separate during mitosis, can result in an organism inheriting more than one set of chromosomes. This is known as polyploidy. Mutations in which there is a change in the base sequence of the DNA molecule include; i) Substitution mutations - here, an incorrect base replaces one of the original ones in the DNA strand. ii) Insertion mutations - in this type of mutation, an extra base is added to the DNA sequence. iii) Deletion mutations - in this type of mutation a base is deleted from the DNA code. iv) Inversion mutations - here, due to a mistake during DNA replication, a whole base triplet is back to front. The DNA below has undergone a substitution mutation because the first thymine has been replaced with an adenine. original DNA C A G T A G G T C mutated DNA C A G A AG G T C As a requirement of this topic, you need to construct a flow chart that shows that changes in DNA sequences can result in changes in cell activity The table below can be used to construct an appropriate flow chart. Notice that the mutation has resulted in a totally new sequence of triplets, with the third triplet becoming a ‘stop’ codon (UAA) . This results in premature termination of polypeptide synthesis. Normal protein synthesis Code( base sequence) on original DNA ↓ Transcribed code on mRNA ↓ Sequence of amino acids formed on ribosome ↓ Final polypeptidefunctional or nonfunctional? ↓ Cellular activity proceeds/ does not proceed normally? CAG, TAG, AGT, TAA, CGC ↓ GUC, AUC, UCA, AUU, GCG ↓ Valine, isoleucine, serine, threonone, alanine ↓ Faulty protein synthesis following mutation CAG, TAG, ATT, AAC, GC ↓ GUC, AUC, UAA, UUG, CG ↓ Valine, isoleucine, stop Functional polypeptide ↓ Nonfunctional poypeptide ↓ Cellular activity proceeds normally ↓ Cellular activity does not proceed normally Table 2-4 The effect of a mutation on cellular activity. Evidence for the mutagenic nature of radiation Radiation is of two main types; ionizing (high energy) radiation, which includes X-rays and gamma rays, and non-ionising radiation such as ultraviolet light. Ionising radiation has been shown to produce free radicals or electrons when absorbed, resulting in deletions, translocations (the movement of whole DNA sections to other locations) and base substitutions in DNA.The atomic bombs dropped on Hiroshima and Nagasaki, for instance, produced a ten-fold increase in cancer deaths in these areas. Mutations such as deletions and translocations have been found in the cancer cells of some of the bomb victims. The Chernobyl incident in 1986 has also been linked to increased cancer rates in Russia, the Ukraine and Belarus. In 1927 Hans Muller was awarded the Nobel Prize for demonstrating that genes in Drosophola mutated when exposed to Xrays. Ultraviolet radiation has been shown to create bonds between adjacent pyrimidine bases (i.e. thymine, cytosine and uracil). This blocks the normal replication of DNA. The disease Xeroderma pigmentosum is a disease in which the sufferer lacks an enzyme needed for the repair of UV-induced mutations. These people must avoid excessive exposure to sunlight. Variation and natural selection Darwin and Wallace recognized that individuals within a population vary, and that those with favourable variations survived to reproduce. Our current idea of natural selection includes the concept that there is a gradual change in the allele frequency within a population. Darwin and Wallace did not understand how variations came about, but we now know that inheritable variations are carried on genes. Genetic variation can arise from haploid gametes uniting randomly during fertilization, independent assortment of homologous chromosome pairs during meiosis and from mutations. Although most mutations are harmful, some may result in the development of favourable characteristics. Examples include the mutation to form dark coloured peppered moths (this feature enabled them to become camouflaged from predators) and the sickle-cell gene in Africans, which confers resistance to malaria in the heterozygous form. As a requirement of this topic, you are expected to explain a modern example of ‘natural’ selection. The development of resistance to insecticides among many species of insects and other arthropods has been demonstrated to be a result of natural selection at work. The mechanism for this phenomenon initially involves the eradication of the most susceptible members of the population when sprayed with the insecticide, leaving behind the more resistant individuals to produce offspring. After a number of generations the incidence of resistance increases, eventually resulting in a situation where the insecticide is no longer of any use. Table 2-5 relates the development of DDT resistance in insects to the different steps involved in natural selection as proposed by Darwin and Wallace in 1848. Steps involved in Natural Selection Within a population genetic variation exists as a result of sexual reproduction, independent assortment of chromosomes and mutations There is a constant struggle for survival among organisms, with those best adapted to the environment surviving (‘survival of the fittest’) The organisms that survive will pass on their favourable genetic characteristics to their offspring Eventually a new population emerges, with one or more new genetically determined characteristics predominating Steps involved in the development of DDT resistance in insects Insect populations often include individuals possessing a mutant gene that produces resistance to DDT The DDT resistant insects survive The DDT resistant gene is passed on to the offspring of these surviving insects Eventually a new population emerges in which DDT resistance predominates Table 2-5 DDT resistance - a modern example of natural selection Punctuated equilibrium and gradualism Darwin’s concept of evolution was that it was a very slow process and that changes in populations occurred gradually over time. However, although the fossil record shows that for most organisms little change has occurred over millions of years, new species seem to appear in the rock layers within a relatively short space of geological time. Moreover, for many species, few or no transitional forms have been found at all. In 1972, Niles Eldridge and Stephen Jay Gould used their ‘Punctuated equilibrium’ model to explain this phenomenon. Their theory was that evolution through natural selection did occur, but usually relatively rapidly and within small groups of a population that had become isolated from the rest of the species. Because these groups were small and selection pressures were probably high (perhaps because a drastic environmental change had been what had caused them to move away in the first place), natural selection and evolutionary change occurred more rapidly. In these small areas fossils of intermediate forms have in fact been found for some species. The new species eventually moved back into the original area, and this appears as an apparent ‘gap’ in the fossil record. Apparent evidence for punctuated equilibrium has been found for certain species, including the marine microfossil Globorotalia crassaformis. In a small region of the South Pacific fossils have been found of this species, a transitional species and the species Globorotalia truncatulinoides. The change from the first to the third species has been estimated to have taken 500,000 years, which is relatively short in geological time. In nearby areas the only species that has been found has been G.truncatulinoides. This more recent species therefore seems to make a ‘sudden’ appearance in the fossil record, but according to Eldridge and Gould this is simply because it has migrated here from the original South Pacific region. As a requirement of this topic, you need to discuss the relative importance of the work of Watson, Crick, Franklin and Wilkins in determining the structure of DNA, and the extent to which they collaborated with each other . The work of Watson and Crick was influenced by the findings of Rosalind Franklin and Maurice Wilkins, who worked on the structure of DNA at King’s College, London. Together, they conducted X-ray diffraction studies of crystallized DNA and found that it is a long molecule of regularly repeating units that are arranged in a helical shape. James Watson and Francis Crick went on to conclude that DNA is a double stranded helix, consisting of alternating sugar and phosphate groups which are linked by pairs of bases. They also deduced that the two DNA strands are complementary, that is, each chain contains a sequence of bases that is complementary to the other. Rosalind Franklin died at the age of 37, missing out on the Nobel Prize her three other colleagues received in 1962. As a requirement of this topic, you are expected to process information from secondary sources to describe a methodology used in cloning The stages involved in the nuclear transfer cloning method are shown in Fig. 2-15 below. d) a) 5. Current reproductive technologies and genetic engineering have the potential to alter the path of evolution Artificial insemination, artificial pollination and cloning Rather than waiting for natural selection to occur, desirable crops and livestock are now produced using ‘artificial selection’. Artificial insemination involves inserting semen from selected male livestock into a female animal. This allows farmers to decide which characteristics will be inherited. Artificial pollination involves dusting the pollen from desirable plants over fertile stigmas, and is a method of controlling the genetic composition of offspring plants. Cloning is a process which produces genetically identical offspring to the parent. The process of ‘tissue culture’ involves cloning plants. Here, the cells of the parent plant are cultured on a nutrient medium to form a ‘callus’ of identical cells, and new plants are grown from this tissue. Animal cloning , still in the developmental stage, can involve either ‘twinning’, in which an embryo is split during its very early stages, or use of the ‘nuclear transfer’ method. Nuclear transfer involves transferring the nucleus from a normal body cell to an egg cell that has had its own nucleus removed. The egg cell is then implanted into another female. The production of the cloned sheep, ‘Dolly’, in 1997 represented the first successful attempt to clone a mammal from an adult cell. Prior to this, frogs and mice had been cloned with limited degrees of success. c) e) b) Fig. 2-15 The stages involved in the nuclear transfer method of cloning; a) nucleus is taken from an adult ewe udder cell; b) UV radiation destroys nuclear material in egg cell; c) nucleus is inserted into egg cell using a micropipette; d) egg is implanted into surrogate mother; e) adult sheep THINK!!! Tissue culture is a more recent cloning method used in plants. Other cloning methods, however, have been used by plant breeders for centuries. Can you name any of these methods? Transgenic species A transgenic species is a plant, animal or bacterium that has been genetically modified to contain a gene from a different species. Areas in which it has proved successful include a) Genetically improving the characteristics of plants and livestock- features such as resistance to insects or disease have been incorporated into some of these organisms by the insertion of genes from other species. A gene from the bacterium Bacillus thuringiensis, for example, has been inserted into cotton plants to form a new variety that is toxic to insect pests such as bollworm, but not to humans or other animals. b) Manufacturing pharmaceutical productstransgenic animals such as goats, pigs and rabbits, certain transgenic plants and bacteria can be used to manufacture haemoglobin, human protein C anticoagulant, insulin, vaccines and growth hormones, among other things. In animals these products can often be harvested from their milk. This process is known as ‘pharming’. restriction enzymes; each particular enzyme will only cut the DNA near a certain base sequence. Other enzymes called DNA ligases are used to join the ‘sticky’ ends of each piece of DNA together when recombinant DNA is made. As a requirement of this topic, you are expected to debate the ethical issues arising from the development and use of transgenic species. Some of these issues are listed in table 2-6, below. c) Gene therapy- this involves altering the genetic make-up of an individual in an attempt to cure genetic diseases. Only the body cells are affected in this process, so the altered genes are not inherited. At present this technique is still in the experimental stage. d) Studying disease- transgenic animals are used to study the effects of human diseases and to test new forms of medication for these diseases. This process involves inserting human genes into the animals to produce the effects of the particular disease studied. Transgenesis was originally produced in mice in the 1970s using DNA injection of mice ova. This is still the most commonly used method and involves introducing DNA from another organism into a sperm nucleus which is then used to fertilise an egg cell. Another method, known as ‘retrovirusmediated gene transfer’, involves using a carrier such as a bacterial plasmid (a circle of DNA) or a ‘bacteriophage’ virus which is then introduced into the host cells. The introduced gene can only be passed on to offspring if it enters the host’s gametes. Both of the above methods, shown in Fig. 2-16, have very low success rates but once produced, transgenic embryos can be frozen and stored for later use. The enzymes used to cut required sections of DNA are known as Reasons supporting the use of transgenic species Bacteria containing the human genes for the production of insulin and growth hormone can be cultured and these useful hormones can be used to treat people with diabetes or growth deficiencies. Plants can be produced that are insect and pesticide resistant, have improved yields and better nutritional quality. Reasons against the use of transgenic species Transgenesis can be seen as interfering with nature and may result in a decrease in biodiversity. Concerns have been raised regarding whether genetically modified food is safe to eat, whether it should be labeled and whether its nutritional value has been affected. Environmental concerns include debate over whether G.M. organisms will affect ecosystems ; genetically modified Canola, for instance, can successfully hybridise with related weeds and so pass on its herbicide resistance to these weeds. Table 2-6 The transgenic species debate enzymes cut desired section of DNA Donor cell gene is introduced into a sperm cell which then fertilises an egg gene is inserted into bacterial DNA Fig. 2-16 The production of transgenic species Bacterial DNA is introduced into host cells or is cultured itself to make useful products. The impact of genetic technology on diversity Useful websites to refer to in this topic Reproductive technologies tend to reduce genetic diversity because the genes for favourable characteristics are selected at the expense of genes for unfavourable characteristics or those considered unimportant. Genetic diversity among members of a population is important because it reduces the species’ risk of extinction. Examples of crops in which genetic diversity has been decreased are cotton and wheat. The Convention on Biodiversity, established in 1992, has set in place procedures aimed at preserving wild seed varieties in seed banks to reduce the risk of crop ‘monocultures’ in the future. Cloning animals such as sheep will further reduce the gene pool because all the animals will be genetically identical. In some situations, however, cloning may in fact help to revive the gene pool: re-creating extinct animals such as the Thylacine is an example of this. i) Evolution and the theory of natural selection: anthro.palomar.edu/evolve/evolve_2.htm - 36k ii) Mendel and genetics: www.biopoint.com/engaging/MENDEL/MENDEL.H TM iii) The chromosome theory of inheritance: www.emc.maricopa.edu/faculty/ farabee/BIOBK/BioBookgeninteract.html iv) DNA and protein synthesis: photoscience.la.asu.edu/photosyn/ courses/BIO_343/lecture/DNA-RNA.html v) Mutations and evolution: www.talkorigins.org/faqs/mutations.html vi) Transgenic crops: www.colostate.edu/programs/ lifesciences/TransgenicCrops/what.html REVIEW QUESTIONS 4. Three scientists involved in determining the structure of DNA werea) Mendel, Wallace and Morgan b) Sutton, Boveri and Beadle c) Muller, Lyell and Eldridge d) Franklin, Watson and Wilkins 5. An example of convergent evolution occurring would bea) The different species of finch in the Galapagos islands which have adapted to their own particular environmental niches b) The Thylacine of Tasmania and the wolf of the Northern hemisphere which are both adapted to a predatory lifestyle. c) The development of DDT resistant insects in farming areas d) The rapid evolution of new species without the appearance of transitional forms 6. A bull with a red coat was crossed with a white-coated cow. All the offspring possessed ‘roan’ coats, in which separate red and white hairs were present. This is an example ofa) sex linkage b) incomplete dominance c) co-dominance d) mutation 7. The scientists who developed the ‘One gene one polypeptide’ theory werea) Watson and Crick b) Darwin and Wallace c) Sutton and Boveri d) Beadle and Tatum 8. The genetic code of a DNA molecule is determined bya) The number and type of sugar groups in the molecule b) The sequence of phosphate groups in the molecule c) The number of base pairs per turn of the double helix d) The sequence of base pairs in the molecule 9. Which of the following techniques would be the best method of determining the evolutionary relationship between two species? a) MULTIPLE CHOICE 1. Part of a DNA strand has a sequence in it that reads AAGCTA. The corresponding sequence in the messenger RNA will bea) TTCAT b) CCTAGC c) UUCGAU d) AAGCTA 2. Colour blindness is a sex linked trait. A colour blind man marries a woman with normal vision whose father was colour blind. The chance of their producing a colour blind daughter is: a) 1 in 4 b) 1 in 2 c) 2 in 3 d) zero 3. The pedigree below shows the inheritance of a certain disease in humans. Affected individuals are shaded. I II III Which of the following best describes the gene for this disease? a) non sex-linked and recessive b) sex- linked and dominant c) non sex -linked and dominant d) sex-linked and recessive a) Studying structural similarities between the two organisms b) Using DNA hybridisation techniques or comparing blood proteins c) Observing the fossil record and identifying any transitional forms between the two species d) Attempting to produce offspring from a mating of the two species 10) 15. The pedigree below shows the inheritance of albinism (lack of pigmentation) in a family. Affected individuals are shaded. 1 A section of a DNA molecule is 30 base pairs long. This would code for: A) 6 amino acids B) 15 amino acids C) 20 amino acids D) 10 amino acids 3 b) SHORT ANSWER AND LONGER RESPONSE QUESTIONS 11. 12. 13. 14. Give an example of natural selection in a population being brought about by the following types of environmental changes. a) physical b) chemical c) competition for resources Explain the meaning of the following terms: a) convergent evolution b) divergent evolution c) homologous structures d) transitional forms In humans the gene for brown eyes (B) is dominant to the gene for blue eyes (b). a) What is the genotype of a woman with blue eyes? b) The woman’s husband is heterozygous for eye colour. What is his genotype? c) Write down the possible gametes produced by the woman’s husband. d) Use a Punnett square or other means to determine the percentage of their children that will have blue eyes. Give two reasons why Mendel’s work was not recognised until the early 20th century, despite the fact that he published his paper in 1866. 2 4 5 6 7 8 a) Is the gene for albinism dominant or recessive? Use the pedigree to explain your answer. b) Determine the genotypes for individuals 1, 2, 3, 5 and 6 c) What possible genotypes could individual 8 be? 16. Write in the missing nitrogen bases on the section of DNA shown below, and label a) and b) as either a sugar or phosphate molecule. A = adenine C =cytosine T = thymine G = guanine C a) A b) G T 17. Explain how the following enable genetic variation to occur within a population. a) Independent assortment during gamete formation: b) Crossing over during gamete formation: c) The random union of gametes in sexual reproduction: 18. 19. 20. a) During the first stage of polypeptide synthesis, the DNA molecule unzips. The code of bases on this single strand is then copied in the process of ‘transcription’. Name the molecule that does this copying. b) To where is this transcribed code now carried? c) What do transfer RNA molecules carry and how many bases are involved? d) Briefly describe how transfer RNA and messenger RNA are involved in the formation of polypeptides at the ribosome. a) What is a mutation? b) Explain why a mutation can result in serious consequences for cellular metabolism. c) Explain the difference between a substitution mutation and an insertion mutation. a) Describe what is meant by a ‘transgenic’ organism. b) Briefly outline the process involved in the production of transgenic organisms. c) Name three organisms that have been genetically ‘improved’ using transgenic techniques. For each of these new species, include the name of the organism that has ‘donated’ some of its DNA to them. had been recessive, all their offspring would have the disease. The disease is not sex-linked because no males with the dominant gene could possibly be produced from the parents in generation I if their genotypes were XbXb and XBY. 4. d) 5. b); Convergent evolution occurs when organisms that are completely unrelated evolve in a similar way because they occupy similar environmental niches. 6. 7. c) d) 8. d) 9. b); Comparing biochemical characteristics is a more accurate way of determining evolutionary relationships because we are effectively comparing the DNA of each organism. 10. d); Each ‘triplet’ of bases on a tRNA molecule is attached to one amino acid. b) SHORT ANSWER AND LONGER RESPONSE QUESTIONS 11. a) The peppered moth population changed in appearance because of an alteration in its physical environment; the polluted surroundings favoured the survival of dark coloured moths. b) The action of DDT on mosquitoes; this selected for resistant individuals. c) Giraffes with longer necks were thought to have competed more successfully for food than those with shorter necks. 12. a) ANSWERS a) MULTIPLE CHOICE 1. 2. 3. c); Note that in RNA uracil replaces thymine, so that whenever adenine appears in the DNA it will combine with uracil in the corresponding RNA. a); The cross involved is XcY x XCXc ↓ XCXc, XcXc , XCY, XcY (1 normal female, 1 colour blind female, 1 normal male, 1 colour blind male) c); The disease must be dominant, because if the two affected parents in generation II Convergent evolution occurs when different species develop similar adaptations in similar environmental niches. b) Divergent evolution occurs when members of a species develop different adaptations in different environments. c) Homologous structures are similar structures found within groups of related organisms; e.g. the pentadactyl limb. d) Transitional forms are organisms displaying characteristics which are transitional between consecutive species in the fossil record. 18. a) Messenger RNA b) It is carried to a ribosome in the cytoplasm c) Transfer RNA molecules carry amino acids, each coded for by three bases. d) Transfer RNA carries amino acids to the mRNA. Each amino acid matches up with a codon (base triplet) on the messenger RNA and attaches to the mRNA at this position. Eventually a chain of amino acids forms, each amino acid being joined to the next by a peptide bond. 19. a) A mutation is a change that occurs in a gene. b) This is because genes are responsible for manufacturing proteins, which include the enzymes controlling metabolism. c) A substitution mutation involves the substitution of one base for another, whereas an insertion mutation involves the addition of an extra base to the DNA sequence. 20. a) 13. a) bb b) Bb c) B, b d) Bb x bb ↓ Bb, Bb, bb, bb; so 50% have blue eyes 14. i) He was not a high profile member of the scientific community ii) Many of the scientists who read the paper did not understand it or realise its significance. 15. a) Recessive, because individuals 5 and 6 have produced both dominant and recessive offspring, so the unaffected condition must be dominant. b) 1= aa; 2= Aa; 3= aa; 5= Aa; 6= Aa c) Individual 8 could be AA or Aa 16. A = adenine C =cytosine T = thymine G = guanine G C a) b) sugar A T b) C G phosphate T A 17. a) The fact that each member of a chromosome pair separates independently of each member of another pair enables a greater number of allele combinations in the gametes: 2n, in fact, where n is the haploid chromosome number. b) This enables the ‘unlinking’ of linked genes to occur, thus increasing the number of allele combinations in the gametes. c) This ensures that offspring are never genetically identical to their parents and makes possible a large range of gene combinations in the offspring. c) ii) iii) A transgenic organism is a plant, animal or bacterium that has been genetically modified to contain a gene from a different species. The required section of DNA is cut from a donor cell’s DNA with restriction enzymes. At the same time a bacterial plasmid is split with restriction enzymes → The ‘sticky’ ends of the two pieces of DNA join together, with the help of DNA ligase, to form a recombinant bacterial plasmid. →The recombinant bacterial plasmid is introduced into host cells using microinjection techniques or particle guns, or the DNA is inserted into bacterial cells which are themselves cultured to produce useful products. i) Genetically modified (Bt) cotton: Contains a gene from a bacterium that makes it insect resistant. Genetically modified sheep: Contain a gene from a plant that produces resistance to blowflies. Genetically modified tomatoes: Contain a fish gene that improves the red colouring of their skin.