CHAPTER 20: GENES WITHIN POPULATIONS WHERE DOES IT ALL FIT IN? Chapter 20 takes a larger look at genetics in its coverage of population genetics. Students should be versed on the information in Chapters 16 and 18. Students many feel the information in Chapter 20 stands alone and is not related to the earlier genetics coverage. It should be reinforced that population genetics forms part of the explanation linking gene function to the adaptations seen in populations of organisms. The information in this chapter should be briefly reviewed before progressing with discussions on evolution and natural selection. SYNOPSIS Variation in the genetic composition of living organisms is the driving force behind evolution as a whole. Darwin and Wallace proposed that natural selection was the mechanism through which it occurs. As a population evolves it becomes better adapted to exist in its local environment. Their idea greatly contrasts with Lamarck who proposed a mechanism by which evolution occurred via inherited characteristics acquired over an organism’s lifetime. Population genetics explains the behavior of alleles within populations. Most alleles are highly polymorphic within a population and provide for greater variation than that caused by mutations alone. The Hardy-Weinberg equation was derived to explain why dominant alleles did not drive out recessive alleles and eliminate genetic variation. In large populations exhibiting random mating, the original proportions of a genotype remain constant over time. The genotypes of such populations are in equilibrium. The Hardy-Weinberg equation is a binomial expansion of the sum of the frequency of the recessive and dominant alleles. One can determine the frequency of one allele given the frequency of the other, as the sum of the two alleles must equal one. The number of heterozygote dominant individuals can also be calculated from such information. Although the Hardy-Weinberg principle predicts consistency in allele frequencies over time, actual frequencies change as a result of (1) mutation, (2) gene flow, (3) nonrandom mating, (4) genetic drift, and (5) selection. Thus the value of using the equation is being able to examine a population’s genotypes at a point in time and then follow that population to determine if the genotypes are changing. The goal of selection is to have the individuals that are best suited to an environment leave the most progeny, something that biologists refer to as fitness. In addition, fitness is a combination of mating successes, and survival. Elimination of undesirable traits is difficult because selection does not operate on rare recessive alleles, unless they are deleterious, then they could have selection pressure against them. Frequency-dependent selection can be negative or positive. When a rare form of genotype exist in a population it might have an advantage not permitted to the more common genotype, or is some cases the rare form is selected against, while the more common form is maintained in the population. Natural selection can also maintain variation in a population through the existence of successful heterozygotes. An example of this principle is sickle-cell anemia and its association with malaria in Central Africa. Individuals with the heterozygous condition are more likely to survive and 161 reproduce than either homozygote, one which succumbs to sickle-cell anemia and the other to malaria. Disruptive selection, directional selection, and stabilizing selection act to eliminate one or both extremes or to eliminate the intermediate from an array of phenotypes. Although all five forces stated above cause genetic variation, only selection produces evolutionary change since only it depends on the nature of the environment. LEARNING OUTCOMES Recognize that natural selection is the correct mechanism for explain evolution. Understand the importance of and identify sources of genetic variation. Know how to solve various problems associated with Hardy-Weinberg equilibrium. List the five factors, and state an example of each, that affect Hardy-Weinberg equilibrium and understand how each can produce evolutionary changes in a population experiencing any one of the five. Compare and contrast the founder effect and the bottleneck effect. Understand the term fitness and all of the considerations that are involved with the concept of fitness. Distinguish between positive and negative frequency-dependent selection. Comprehend what is meant by “the heterozygote advantage,” and explain the example given in the text. Describe and be able to graph the examples of the three kinds of selection. Appreciate the limitations of selection COMMON STUDENT MISCONCEPTIONS There is ample evidence in the educational literature that student misconceptions of information will inhibit the learning of concepts related to the misinformation. The following concepts covered in Chapter 20 are commonly the subject of student misconceptions. This information on “bioliteracy” was collected from faculty and the science education literature. Students believe that all genes program for visible traits Students are unfamiliar with the exact nature of regulatory gene in determining traits Students believe that only the observable phenotype is subject to selection Students do not fully understand the role of genetic drift Students believe that acquired traits are inherited Student believe evolution is driven to make “better” organisms Students do not take into account mutation in determining population genetics Students do not take into account migration in determining population genetics Students believe selection only kills off weaker individuals Students believe “fitness” is an absolute set of characteristics INSTRUCTIONAL STRATEGY PRESENTATION ASSISTANCE It will be necessary to review manipulation of fractions and other basic algebraic skills so that 162 students can work with and understand the mathematics associated with the Hardy-Weinberg equation. Prepare many practice problems if you intend to test heavily on that material. This isn’t as necessary if your intent is to understand the basic concepts of Hardy-Weinberg without relying too heavily on the mathematics. Use perfect squares (4, 16, 36, 49,…) and the examples will come out really nice. Students will catch on to the concept faster. Discuss the rationale behind nonrandom mating. Certain physical traits are more “appealing” (i.e., long tails in many tropical species of birds) as are certain behaviors. Red bellies in the male stickleback fish are another example. One could extrapolate on this idea in terms of human appearance, body style, and dress and how it has varied over time and with society and social status. Genetic drift is perhaps the most difficult factor affecting equilibrium to understand. Discuss the rapid radiation of life forms in newly opened territories and that it occurred after mass extinctions as evidenced by the fossil record. Pass some of those fossil types around or provide images for students to see. HIGHER LEVEL ASSESSMENT Higher level assessment measures a student’s ability to use terms and concepts learned from the lecture and the textbook. A complete understanding of biology content provides students with the tools to synthesize new hypotheses and knowledge using the facts they have learned. The following table provides examples of assessing a student’s ability to apply, analyze, synthesize, and evaluate information from Chapter 20. Application Analysis Synthesis Have students calculate allelic frequencies using the Hardy-Weinberg equation. Have students provide examples that refute Lamarck’s view of population genetics. Ask students to explain why certain alleles are uncommon in a population of organisms. Have students explain how meiosis is related to gene distribution in a population of organisms. Ask students to assess the role of genetic drift in explaining allelic variations in human populations from different regions of the world. Ask students to hypothesize about the environmental conditions necessary for the population dynamics of an organism to obey the Hardy-Weinberg equation. Ask students how changes in mating preferences of a certain group of animals can affect the population genetics of the organism. 163 Evaluation Ask students to explain what must be done in agriculture to insure little or know genetic drift in the population of crops or livestock. Ask students describe how the population dynamics of an organism would be affected if its inheritance followed Lamarck’s principles. Ask students to evaluate the effects on the human population of increased mutation rates due to increased exposure to radioactivity associated with building materials using in homes and other structures. Ask students to evaluate the accuracy and credibility of the population genetics principles used by supporters of an ideology called human eugenics. Ask student to evaluate the pros and cons of monoculture on the population dynamics on crop plants. VISUAL RESOURCES Bring a copy of “Just So Stories” by Rudyard Kipling to demonstrate the idea of acquired characteristics. Show a close up of an actual red blood cell in its normal shape and one that is in the sickle shape. This really causes the students to appreciate the difference. Photographs or actual samples of gels showing various polymorphisms are helpful to explain the concept. Photos or drawings of various morphological polymorphisms are additionally valuable. IN-CLASS CONCEPTUAL DEMONSTRATIONS A. Virtual Hardy-Weinberg Demonstration Introduction Animated models are effective tools for visualizing mathmatical concepts such as the Hardy-Weinberg equation. This demonstration provides a simple to following lecture supplement for depicting population dynamics. Materials Computer with live access to Internet LCD projector attached to computer Web browser with bookmark for Oklahoma State University Hardy-Weinberg Page at http://zoology.okstate.edu/zoo_lrc/biol1114/tutorials/Flash/life4e_15-6-OSU.swf o Set animation so manual play by pressing the right mouse control and turning off the “Loop” and “Play” functions of the Flash animation. o 164 Procedure & Inquiry 1. Review the principles of the Hardy-Weinberg equation. 2. Tell students they will be viewing an animation showing how different variables affect the distribution of genes in a population 3. Start animation by pressing the right mouse control and setting animation to “Rewind” and then “Play”. 4. Stop the animation by pressing the right mouse control and setting animation so “Play” is off. 5. Run the animation series and have students explain the results of each factor that affects the outcomes of gene distribution in a population. 6. Have the class answer questions related to the limitations of the Hardy-Weinberg equation. B. Chapter Relationship Concept Map Introduction This fun and fast way to build a concept map engages students in developing a scheme for reviewing all the facts and concepts associated with DNA replication. It helps student select relevant information needed to understand DNA replication. In addition, it helps them incorporate concepts learned in other sections of the book that contribute to an understanding of DNA replication. The simple click and drag animated concept mapping tool should be practiced before using in class. Materials Computer with live access to Internet LCD projector attached to computer Web browser with bookmark to Michigan State University C-Tool: http://ctools.msu.edu/ctools/index.html Chapter outline of book for Chapters 1 through 19 projected on overhead Procedure & Inquiry 1. Tell students that you would like to do a quick assessment of how population genetics is related to the information covered in the prior chapters.. 2. Then go to the Michigan State University C-Tool and add the concept map term “Population Genetics”. 3. Use the “Add” and “Concept Word” feature to place a term on the map background related to a concept in one of the prior chapters. 4. Solicit a few more terms or concepts from prior chapters and then ask the class how the concepts are connected to population genetics. Use the “Add” and “Linking Line” feature to build a connecting line. 5. Then ask the students to justify the concept linking lines. Use the “Add” and “Linking 165 Word” feature to place student comments on the map. 6. Continue the activity until you feel the students made a comprehensive map. USEFUL INTERNET RESOURCES 1. Contemporary and relevant applications of population genetics information is important for maintaining student interest in Chapter 20. The Plant and Soil Sciences eLibrary provided by the University of Nebraska at Lincoln has a valuable website for downloading lessons on contemporary genetics principles related to agriculture. It can be used to supplement a lesson based on Chapter 20. The website search feature can be found at http://plantandsoil.unl.edu/croptechnology2005/gen/. 2. San Diego State University provides a value website about the role of Chaos Theory in explaining population dynamics. It is an interesting side topic to spur student inquiry into population dynamics. The website can be found at http://www.banyantree.org/jsale/chaos/index.html. 3. Faculty who use Mathcad software in their teaching can download software add-ons that permit students to do mathematical calculations of genetic drift and the Hardy-Weinberg equation. This site is available at http://www.stanford.edu/group/Urchin/ani-plus.htm. 4. Cases studies are an effective tool for reinforcing the concepts related to population dynamics. The University of Buffalo provides a teaching case study called “As the Worm Turns: Speciation and the Apple Maggot Fly”. It encourages student use population genetics data to investigate evidence of speciation. The case study can be found at http://www.sciencecases.org/maggot_fly/maggot_fly.pdf LABORATORY IDEAS This virtual laboratory session provided by the University of Connecticut permits students to control the variables associated with the population genetics concept genetic drift. It engages students in an inquiry activity that provides graphical displays of their hypotheses. a. Students should be provided with the following materials to perform open-ended experiments on plant development. a. Computer with Internet access b. Web browser linked to http://darwin.eeb.uconn.edu/simulations/drift.html. b. Tell the students that they will be asked to predict population dynamics of two alleles by adjusting the frequency of p. c. Have them to interpret the graphs and evaluate the change of p for different sized populations. d. Ask the students to explain the graphical results obtained for a particular population and to compare the frequency of p for different population sizes. LEARNING THROUGH SERVICE Service learning is a strategy of teaching, learning and reflective assessment that merges the academic curriculum with meaningful community service. As a teaching methodology, it falls under the category of experiential education. It is a way students can carry out volunteer projects 166 in the community for public agencies, nonprofit agencies, civic groups, charitable organizations, and governmental organizations. It encourages critical thinking and reinforces many of the concepts learned in a course. 1. Have students design population dynamics flash cards for use in high school biology classes. 2. Have students tutor high school students covering population genetics in a biology class. 3. Have students do a short PowerPoint presentation on the Hardy-Weinberg equation for high school teachers. 4. Have students collect an up to date list of references on population genetics for the college library or a biology department website. 167