Lab 8: Cellular Respiration OBJECTIVES: Understand the major events of glucose catabolism (cellular respiration): glycolysis, the citric acid cycle and oxidative phosphorylation. Compare and contrast aerobic and anaerobic respiration. Measure the relative production of carbon dioxide by plants and animals. ______________________________________________________________________________ INTRODUCTION: All living organisms have evolved mechanisms to obtain energy needed to fuel biological functions, including growth, metabolism and maintenance. These mechanisms include a series of biochemical reactions, collectively referred to as cellular respiration. During this process, organic molecules (e.g. glucose) are enzymatically broken down, releasing energy stored in the bonds of adenosine triphosphate (ATP), which cells use to perform metabolic functions. Energy flow in biological systems occurs through oxidation-reduction or redox reactions where electrons are transferred from one molecule to another. Recall from Lab 4 that reduction is the acquisition of electrons or hydrogen atoms while oxidation is the loss of electrons or hydrogen atoms. During cellular respiration, electrons are removed from glucose (i.e. oxidized) and some of the released energy is stored as ATP. The dozens of redox reactions that take place during respiration use electron acceptors for energy transfer. Two of the most important electron acceptors are nicotinamide adenine dinucleotide (NAD+) and flavin adenine dinucleotide (FAD+), derived from niacin (Vitamin B3) and riboflavin (Vitamin B2), respectively. These molecules are reduced to NADH and FADH2 when they acquire electrons, which they transfer to other molecules to generate ATP. Depending on which molecule serves as the final electron acceptor, the process is aerobic or anaerobic. In aerobic respiration, the final electron acceptor is oxygen while in anaerobic respiration the final electron acceptor can be inorganic compounds (other than oxygen) such as nitrates, sulfates, or ethanol (Fig. 1). Figure 1. Comparison of redox reactions in aerobic and anaerobic respiration 1 Cellular respiration (Fig. 2) can be divided into four stages: (1) Glycolysis (2) Pyruvate oxidation (3) Kreb’s cycle (4) Electron Transport Chain and Chemiosmosis Figure 2. An Overview of Aerobic Respiration Glucose catabolism begins with glycolysis in the cytoplasm (Fig. 3). Glycolysis includes a series of reactions where each entering glucose molecule (6 carbons) is split into 2 molecules of pyruvate (3 carbons). In total, glycolysis yields 4 ATP molecules, however, 2 ATPs are used for the priming reactions that initiate glycolysis. Thus, a net of 2 ATPs are generated for the entire process. In addition, 2 NADH molecules are reduced from NAD+ during this stage. If oxygen is present, the processes will begin with pyruvate oxidation. During this phase, each pyruvate molecule generated from gylcolysis enters the mitochondria and is converted into carbon dioxide (CO2), which is released as a side-product, and forms acetyl, a 2carbon sugar that joins with coenzyme A to form acetyl-CoA. More importantly, this process also reduces NAD+ to NADH, which can be used to generate ATP. During aerobic respiration, acetyl-CoA enters the Krebs cycle (also known as the citric acid cycle). For every turn of the Krebs cycle, one ATP molecule is produced and multiple NAD+ and FAD+ molecules are reduced to NADH and FADH2, respectively. The final products of the Krebs cycle per glucose molecule include: 2 ATP, 2 FADH2, 6 NADH, and 4 CO2. In the final stage of cellular respiration (Fig. 3), the electrons carried by FADH2 and NADH are transferred through a series of transmembrane proteins known as the electron transport chain (ETC), creating a proton gradient that is used to drive ATP synthesis. Each molecule of NADH yields 3 ATPs while each FADH2 generates 2 ATPs, resulting in an overall production of 32 ATPs in this stage. 2 Intermembrane space Pyruvate from cytoplasm H+ H+ e– NADH H+ 1. Electrons are harvested and carried to the transport system. Acetyl-CoA e– NADH Krebs cycle 2. Electrons provide energy to pump protons across the membrane. H2O FADH2 3. Oxygen joins with protons to form water. 1 2 O2 O2 + 2H+ CO2 32 2 ATP H+ ATP Mitochondrial matrix 4. Protons diffuse back in, driving the synthesis of ATP. ATP synthase Figure 3. Overview of ETC and Chemiosmosis Conversely, in the absence of oxygen (anaerobic respiration), the pyruvate molecules produced during glycolysis do not enter the Kreb’s cycle but undergo fermentation instead. Without oxygen, pyruvate cannot enter the remaining steps of aerobic respiration and must be used differently - either ethanol or lactic acid is produced. Along the way, NADH that was created in glucose catabolism is oxidized back to NAD+, pyruvate is reduced and broken down, and a small quantity of ATP is produced. There are two main types of fermentation reactions: (1) ethanol fermentation and (2) lactic acid fermentation. Ethanol fermentation occurs in organisms such as yeast (Fig. 4a) which have been used for food and alcoholic beverage production. Lactic acid fermentation occurs in animal cells. For example, when oxygen is not readily available to muscle tissue, the muscle cells use lactic acid fermentation to produce ATP (Fig. 4b). Build up of lactic acid is the primary cause of muscle fatigue, often experienced during strenuous exercise. Overall, the anaerobic process yields a net of 2ATP, an 18-fold decrease in ATP production (per glucose molecule) compared to aerobic respiration. a) b) Figure 4. Anaerobic respiration: a) alcohol fermentation and b) lactic acid fermentation 3 Figure 5 summarizes the basic differences between the products of aerobic and anaerobic respiration. While all three types of cellular respiration produce carbon dioxide (CO2), water (H2O), energy (ATP) and heat, they do so at different efficiencies. Both types of anaerobic fermentation produce a net total of 2 ATP since they only undergo glycolysis. In contrast, during aerobic respiration, up to 38 ATP molecules are produced through the continuous redox reactions of glycolysis, pyruvate oxidation, Krebs cycle, and ETC stages of glucose metabolism. Thus, aerobic respiration, when compared to anaerobic respiration, is a much more efficient process for ATP production. Aerobic respiration: C6H12O6 + 6O2 6CO2 + 6H2O +ATP +Heat Anaerobic fermentation (plants and some microbes): C6H12O6 (Glucose) 2C2H5OH + 2CO2 +ATP + Heat (Ethanol) Anaerobic fermentation (animals and some microbes): C6H12O6 2CH3CHOHCOOH +ATP + Heat (Lactic Acid) Figure 5. Equations for different forms of cellular respiration Question: List the advantages and disadvantages of respiring anaerobically. ______________________________________________________________________________ TASK 1 - Demonstration of Anaerobic Respiration Anaerobic organisms, including bacteria and yeast, produce energy in the absence of oxygen via anaerobic respiration. In this pathway, glucose is catabolized to 2 pyruvate molecules during glycolysis, which is reduced to either lactic acid or ethanol and CO2 during fermentation. In this exercise you will demonstrate CO2 production during anaerobic fermentation by yeast. You will examine the effects of sugar type on the fermentation process. 4 Sugars are simple carbohydrates. Also called saccharides, they come in two forms: monosaccharides and disaccharides. Monosaccharides have the chemical formula C6H12O6 and Disaccharides have the chemical formula C12H22O11. However, many different configurations exist for each of the two kinds. These different configurations of atoms are called isomers. Isomers of sugars are important to life because organisms have evolved various enzymes to access the energy in each form. Some organisms are therefore better at getting at some forms of sugar than other forms because of the enzymes that they can use. Today you will test the effects of 5 different sugars on yeast fermentation: glucose, sucrose, fructose, maltose and xylose. Glucose, fructose, and xylose are all monosaccharides, while maltose and sucrose are both disaccharides. Glucose is a simple sugar found in plants and is one of the main products of photosynthesis. Fructose is also a plant-based simple sugar. Sucrose is consists of glucose and fructose bonded together to form a disaccharide. Xylose is a sugar first isolated from wood and is derived from hemicellulose, a component plant cell walls and fibers. Maltose is a disaccharide formed from two glucose molecules. It is the sugar produced when amylase breaks down starch. glucose xylose fructose sucrose maltose Figure 6. Chemical structure of five sugars Develop a Hypothesis: Given what you already know about anaerobic respiration, state what you expect to happen over time in the experiment (Hint: consider the products of anaerobic respiration). Do you expect to observe a difference between the sugars? Propose an explanation. Write your hypotheses (Ho and Ha) in the space provided below. 5 Procedure: a. Your TA will prepare one class control j-tube using only yeast and water, following the instructions below. b. Check with your TA to determine which three sugars you will prepare. Obtain 3 Jtubes, 3 large beakers, and 3 small flasks. Label each beaker and flask with the sugar types you have been assigned. Fill all large beakers with water from the 38˚C water bath. c. Weigh out 1g of each sugar and three 1g portions of yeast. Add 35ml of tap water to each flask. Add the sugars to the appropriately labeled flask and mix to dissolve. d. Add 1g of yeast to each flask, mix well (no lumps!) and pour the contents into a Jtube and place into the appropriately labeled beaker. Make sure the closed end of the J-tube is completely filled with liquid! Note the time or start a timer. Try to set up all the j-tubes at approximately the same time, utilizing three group members. e. Replace the warm water in both beakers every 15 minutes to maintain temperature. f. Quantify the amount of CO2 produced by measuring the height of the gas bubble in the J-tube from the top of the closed end to the liquid-gas interface. Record this data every 15 minutes in Table 1. g. Allow the fermentation process to proceed for 1.5 hours. Once the experiment is complete, copy your team’s data onto the board for the rest of the class. h. Fill out the remainder of Table 1 using the class data. Calculate the average bubble height for each time point. Table 1: Height of gas bubble (mm) Sugar Replicate 0 min 15 min 30 min 1 2 Glucose 3 Average 1 2 Galactose 3 Average 6 45 min 60 min 75 min 90 min 1 2 Fructose 3 Average 1 2 Maltose 3 Average 1 2 Sucrose 3 Average Control Questions: 1. Was there a noticeable increase in the amount of CO2 produced for all treatments over time? 2. How does gas bubble height relate to the amount of carbon dioxide produced during fermentation? 3. Using the graph paper provided, plot the change in CO2 over time for each treatment using the averaged values. Make sure you label your axes and the line representing each treatment. 7 4. What happens to CO2 levels with different carbohydrates? Explain the observed differences (or lack there of) based on your knowledge of the provided sugars. 5. Based on your results, can you explain which ingredients are essential for fermentation to occur and why? 6. Overall, what can you conclude about your hypotheses? Explain. 8 ______________________________________________________________________________ TASK 2 - Demonstration of Aerobic Respiration When eukaryotic organisms respire they release CO2, which can combine with H20 to form carbonic acid (H2CO3). In general, acidic solutions such as H2CO3 (pH less than 7) have a larger concentration of H+ ions while basic ones (pH greater than 7) contain more OH- ions (Fig. 6). An indicator, such as bromothylmol blue (BTB) can be used to detect changes in pH resulting from CO2 production during cellular respiration. In a basic solution, BTB is blue, in neutral solutions it turns green, and in acidic solutions it is yellow. During this task you will examine aerobic respiration by comparing the pH of water containing actively respiring animal (snails) and plant (Elodea) cells. Figure 6. pH Scale Questions: a. What major energy producing process is characteristic of plant cells but not animal cells? b. What gas is consumed in this process? Develop a Hypothesis: Considering the set-up for this procedure (Table 2), state what you expect to occur when comparing respiratory rates in animals vs. plants in the light and dark. Write your hypotheses (Ho and Ha) in the space provided below. 9 Procedure: (Note: Since this task requires a 24 hour incubation, your TA will prepare these materials ahead of time.) 1. Fill 8 test tubes will distilled water (see Table 2). 2. Obtain the organisms listed in Table 2 and add each organism to the corresponding tube. 3. Add 10 drops of BTB and stopper to prevent gas exchange with the atmosphere. 4. Place tubes 1-4 under a grow light and tubes 5-8 in the dark. Leave undisturbed for 24 hours. 5. Record your results in Table 2. Table 2: Tube # Independent Beginning Color Color variables Color Prediction Result 1 0 snails, 0 Elodea, light blue 2 2 snails, light blue 3 2 Elodea, light blue 4 2 snails, 2 Elodea, light blue 5 0 snails, 0 Elodea, dark blue 6 2 snails, dark blue 7 2 Elodea, dark blue 8 2 snails, 2 Elodea, dark blue Questions: 1. Based on your results, what can you conclude about your hypotheses? Explain. 2. Use your knowledge of the behavior of CO2 in water to explain what happened to the pH in each tube. 10 2. How do snails affect the level of CO2 in the water? Does light or dark have an effect? 3. How does Elodea affect the level of CO2 in the water? Does light or dark have an effect? 4. What tube best represents a balanced system? Explain. 5. What would you expect to happen to the pH in a tube if the snail died shortly after being placed inside? What about the Elodea? 11