Learning Unit 1: Introduction to Biochemistry 1. How many different types of macromolecules are there? Name them. Three. Carbohydrates, nucleic acid and proteins 2. What do mitochondria do in the cell of a eukaryote? In the cell of a eukaryote, mitochondria function as the producer of energy which is in the form of ATP (adenosine triphosphate) 3. What is the function of smooth endoplasmic reticulum (ER)? Smooth endoplasmic reticulum functions in metabolic processes Synthesis of lipids Carbohydrates and calcium concentration metabolism Detoxification of drug 4. Name two characteristics that distinguish eukaryotic cells from prokaryotic cells Nucleus Prokaryote Lack of membrane-bounded nucleus but instead, has nucleoid Organelles Ribosomes as their only type of organelles Eukaryote Presence of membranebounded nucleus Cells contain internal membrane-bounded organelles such as mitochondria and chloroplasts 5. What advantage does a eukaryotic cell gain by having organelles like mitochondria, nucleus, etc? Eukaryote cell is more complex. Being more complex compared to prokaryote cell, the metabolism and energy conversion within a eukaryote cell is much more delicate and thorough. Thus, these organelles, each with specific additional functions are crucial in processes that would allow the cell to survive, grow and reproduce. 6. What do the letters ‘pH’ stand for and what is the definition of pH? “H” stands for hydrogen, in this case, the hydrogen cation (H+) “p” is shorthand for “negative logarithm thereof”. The term refers to the negative logarithm of the hydrogen cation concentration, which determines the acidity/basicity of solution in that certain solution. a) What is the [CH3COOH]/[CH3COO-] ratio in acetate buffer at pH 4.2? For [CH3COOH] = HA, [CH3COO-] = A- , pKa = 4.8 pH = pKa + log([A-]/[HA]) 4.2 = 4.8 + log([A-]/[HA]) 4.2 – 4.8 = log([A-]/[HA]) -0.6 = log([A-]/[HA]) [A-]/[HA] = -log (-0.6) = 0.25 therefore we see it as: [A-] = 0.25 = 1 [HA] 1 4 b) You want to prepare 1 liter of 0.10 M buffer using NaHCO3 and Na2CO3. Calculate the mol of each required for a buffer at pH = 9.9. For NaHCO3 = HA, Na2CO3 = A- , pKa = 10.2 pH = pKa + log([A-]/[HA]) 9.9 = 10.2 + log([A-]/[HA]) 9.9 – 10.2 = log([A-]/[HA]) (-0.3) = log([A-]/[HA]) [A-]/[HA] = -log (-0.3) = 0.5 therefore we see it as: [A-] = 0.5 = 1 [HA] 2 Moles required = 1L × 0.10 M = 0.10 mol Fraction NaHCO3 = 0.5 1 + 0.5 = 0.33 Fraction Na2CO3 = 1- 0.33 = 0.67 c) The crystalline salt of ammonium acetate (0.10 mol) was dissolved in 1 liter of water. Calculate the pH. pKa = 4.8 pKa = 9.2 pH = (pKa + pKa)/ 2 = (4.8/9.2)/ 2 =7