1 SUPPLEMENTARY METHODS 2 ESM M1 – Observation nests 3 Semi-natural observation nests were constructed by sandwiching a 1 cm x 3 cm x 13 cm 4 piece of ultra-light density balsa wood between 2 pieces of clear acrylic sheeting. A 9 cm long 5 shallow groove was cut from one end of the wood to serve as an entrance and tunnel. The 6 acrylic sheeting was then covered with opaque fabric or plastic, secured with binder clips, and 7 hung under a plastic roof in the BCI forest (ESM F1). 8 9 Each observation nest was seeded with a single newly emerged female, which we collected from natural nests at the larval or pupal stage and reared in tissue culture trays in ambient 10 conditions until the day after they eclosed. Upon introducing adult females to observation nests, 11 we plugged the nest entrance with a piece of cotton for a few hours to prevent them from 12 immediately flying away. After that initial adjustment period, however, these females could 13 leave and enter the nest freely. Behaviour in these nests appeared similar to behaviour of bees in 14 natural and modified natural nests. 15 We censused observation nests every 4 days to record newly constructed cells, newly closed 16 cells, newly emerged offspring, and the presence or absence of each adult. We could predict 17 offspring emergence dates based on the date each cell was closed, and censused daily around this 18 time in order to know precise emergence dates. During the next full census after a new bee 19 emerged, we measured head width across the widest part of the eyes with callipers and used a 20 white Decolor paint pen to mark the thorax with individually distinct patterns. 21 One solitary female included in the analysis was collected just a few days prior to her first 22 offspring emerging. We could be certain that this was a solitary nest, however, because she had 23 laid only two eggs, both were males, the last of which was laid one month prior to collection. 24 This female was thus clearly following the solitary trajectory of laying only males in the first 25 brood, and was in the inter-brood phase of her life cycle. This is further described in [1]. 26 Female offspring that emerged from eggs laid in observation nests were assigned to the 27 worker caste if they remained in their natal nest and foraged. Foraging behaviour was recorded 28 under infrared light with a Sony miniDV camcorder positioned near the entrance of each nest 29 during peak foraging times, approximately 90 minutes before sunrise and 60 minutes after sunset 30 [2]. Workers were the daughters of their queens in all nests except one, in which the worker was 31 unrelated [1]. 32 ESM M2 – New natural nests 33 Dispersers were collected from newly initiated natural nests. We marked and hung sticks of 34 similar size and density to those used for nesting by M. genalis throughout the BCI forest. We 35 censused these sticks every 3 days to identify newly initiated nests. Three dispersers were 36 collected from nests that were 6-9 d old, and 18 from nests that were 1-3 d old. All the 37 dispersers had constructed an entrance collar, which is one of the first stages of nest initiation. 38 Some had begun constructing and provisioning brood cells, but we included only those 39 foundresses that had not yet oviposited (i.e. had no closed brood cells). 40 ESM M3 – Socially isolated females 41 Female pupae were collected from natural nests and reared in cages made out of clear plastic 42 round containers (9.3 cm h x 8.5 cm d) with lids. Each bee had passed the larval feeding stage 43 when they were introduced to our study, and do not eat during the pupal growth phase. The 44 larval diets were likely to have varied among females [3]. Each cage had 8 small air holes poked 45 in the lid and a feeding station on one side, which was a 1.8 ml microcentrifuge tube, with the 46 bottom cut off and the open end packed with cotton guaze, and filled with a 50% solution of 47 honey water (2008) or a 45% honey, 10% soy protein, 45% water solution (2009). Soy protein is 48 known to contain adequate quantities of all amino acids required by honeybees [4], and amino 49 acid requirements tend to be similar across species [5]. Soy protein has been used as a complete 50 protein source in studies with other halictid bees [6, 7]. We began providing food for each 51 female ad libitum upon eclosion. We replaced the cotton every 2 days to avoid bacterial growth. 52 Each cage also had an artificial refuge, created by cutting the bottom portion off of another 1.8 53 ml microcentrifuge tube, removing the lid, and attaching it to the cage floor. The cages were 54 kept under ambient forest conditions in complete darkness (while still developing) or very dim 55 light (after eclosion) to replicate light conditions experienced in natural nests. Head width was 56 not significantly different between socially isolated females in each year (Z = -1.53, p = 0.13, n = 57 141). 58 ESM M4 – Collection protocol 59 All collections were made at the same time of year, within a 5 week time period (4/26/2008 – 60 5/31/2008 and 4/23/2009 – 5/24/2009) to minimize seasonal effects. Collections were also done 61 at the same time each day (1330-1700) to minimize circadian effects and to ensure that all bees 62 would be present in the nest. Nests entrances were plugged with cotton, placed in a dark box, 63 and brought to a holding room with ambient temperature outside the laboratory between 1200- 64 1230, where they were kept in the dark and allowed to acclimate for at least 1 hour. Socially 65 isolated bees were treated the same way, but were transferred to the collection box in their cages. 66 Nests/cages were taken one at a time from the holding box, taking care not to disturb the others. 67 Bees in cages and nests were chilled at 4o C for 3 minutes and -18o C for 5 minutes, respectively, 68 then immediately cross-pinned to a wax lined petri dish. Heads were removed and flash frozen 69 in liquid nitrogen prior to pinning for a separate study. Hemolymph was collected under a 70 dissecting stereoscope by puncturing the exoskeleton between the 4th and 5th tergites with a 1 μl 71 capillary tube. Hemolymph was deposited in 10 μl of 1x protein buffer (Complete mini-tabs, 72 Roche Applied Sciences, Bath, UK) and stored at -80o C. The metasoma (abdomen) was 73 removed and stored in insect Ringer’s solution at 4o C. 74 ESM M5 – Morphological and anatomical measurements 75 Head width was measured as the distance between the most distal portion of each eye 76 perpendicular to the frontal midline with callipers while bees remained frozen on dry ice after 77 collection. All 2008 caged bee measurements were done by KMK and all 2009 bee 78 measurements were done by Ting-Yan Chan. 79 Metasoma were dissected within 36 hours (most within 24 hours) of collection to measure 80 ovary development. Tergites were removed to expose the ovaries, and a digital photograph was 81 taken through the microscope. 82 ESM M6 – Vitellogenin assays 83 Vitellogenin titers were assayed relative to β-galactosidase standard curves with SDS-PAGE, 84 as in Nelson et al. [8]. Hemolymph in protein buffer (3-8 μl) was added to 10 μl of 2x loading 85 buffer (0.065 M bis/Tris pH 6.8 with HCl, 20% sucrose, 2% SDS, 2% DTT, 0.01% bromophenol 86 blue) and loaded into a 7.5% polyacrylamide gel with a 4% stacking gel (Bio-Rad, Hercules, 87 CA) along with a dual colour size ladder (Precision Plus Protein Standards, Bio-Rad, Hercules, 88 CA), and 3 or 4 lanes of known quantities of β-galactosidase protein in 10 μl of loading buffer. 89 Gels ran in SDS running buffer (10% SDS, 30.3% Trizma Base, + 144.1% glycine) at 100-110V 90 for approximately 90 – 180 minutes. Protein bands were stained with Coomassie Brilliant Blue, 91 and protein concentration was quantified with Quantity One imaging software (Bio-Rad, 92 Hercules, CA). 93 Western blots were used to confirm Vg band identity (~180 kDa) against a Vg antibody for 8 94 individuals from a separate study (ESM F2). Proteins were transferred to a nitrocellulose 95 membrane after segregating with SDS-PAGE similar to that described above. Non-specific 96 protein binding was blocked using a 3% solution of instant non-fat milk in 1X PBST and 97 incubated overnight at 4C. Vg antibody (1:25,000 in blocking solution) was then hybridized to 98 the membrane. The membranes were washed in 1X PBST, and membrane-bound antigen- 99 antibody complexes were then visualized with horseradish peroxidase-conjugated goat anti- 100 rabbit IgG (GE healthcare) at a dilution of 1:1,000 and developed with Western Lightning 101 Chemiluminescence reagent (PerkinElmer) on a Versa-Doc imaging system (Bio-Rad, Hercules, 102 CA). 103 SUPPLEMENTARY DISCUSSION 104 ESM D1 – Queens and their solitary counterparts 105 The best classifiers of social phenotype were body size and a size-scaled ovarian index. 106 Smith et al. [9] also found significant differences in ovary size between queens of social nests 107 and solitary reproductive females. Differences in ovarian traits may or may not have existed 108 prior to the onset of egg-laying and offspring emergence, and our data cannot distinguish 109 between cause and consequence of the social strategies. Increased ovary activation may be the 110 result of socially-mediated endocrine activity in social nests, where competition for dominance 111 and reproductive opportunity is expected to be high [10-13]. Aggression from queens to workers 112 is common in social nests [14], and M. genalis queens have significantly higher JH titers than 113 solitary females (unpublished data). The maintenance of dominance behaviour triggers 114 morphological changes in the development of brain regions associated with sensory integration 115 and learning [15], and social dominance could trigger other changes as well. However, the 116 increase in ovary development may also be a consequence of behavioural specialization. Social 117 nests were likely to produce more offspring broods, which increases the probability of collecting 118 a queen when she has a fully developed oocyte [1]. 119 Head width was also a significant predictor of a foundress’ social trajectory, whereby solitary 120 females were significantly smaller than queens. Body size as the basis of alternative 121 reproductive strategies, independent of fecundity, has also been suggested for other halictid bees 122 [16, 17]. Variation in body size among nest foundresses may influence social strategy if it 123 reflects relative ability of queens to manipulate daughters into working, either through post- 124 emergence aggression or differential provisioning. Trophallaxis is often accompanied by 125 aggressive solicitation from queens to workers [14], so it is possible that small queens may not 126 be able to obtain food from workers. A small queen could theoretically overcome this problem 127 by making an even smaller worker, but minimum size constraints may limit this option in at least 128 two ways. Females and female larval provisions are significantly larger than males and male 129 provisions [3], which indicates a threshold of larval food below which laying a male egg is a 130 more optimal strategy. Secondly, smaller females have smaller compound eyes and smaller 131 facets (ommatidia) [2], which would decrease photon capture [18], and hence more severely 132 constrain foraging under dim light conditions for small females relative to larger ones [19]. 133 In contrast with our findings, a previous study of nests with unknown histories, which likely 134 included foundresses born at different times of year, found that queens and solitary females were 135 the same size [13]. It is possible that seasonal variation in body size, variation in nest quality, or 136 contingent events like the death of a worker may have provided too much noise to detect a 137 difference between solitary and social foundresses. It is unlikely that our study is biased by 138 small foundresses who would not have initiated their own nest in a natural setting because the 139 distribution of head widths, ovary development, and reproductive behaviour observed in our 140 observation nests mirrors natural nests [1, 9, 13, 20, 21]. 141 142 ESM T1 Mean values (± sd) of morphological and physiological measurements among natural 143 dispersers, workers, queens, solitary reproductives, and socially isolated females. head width (mm) 4.39 ± 0.38 n = 21 5.41 ± 1.02 n = 21 1.23 ± .20 n = 21 0.29 ± 0.24 n = 20 workers 3.77 ± 0.22 n = 23 2.33 ± 1.08 n = 23 0.61 ± 0.26 n = 23 0.25 ± 0.32 n = 21 queens 4.08 ± 0.33 n = 23 7.51 ± 1.90 n = 23 1.86 ± 0.51 n = 23 0.52 ± 0.43 n = 22 solitary females 3.77 ± 0.16 n = 15 5.00 ± 1.35 n = 15 1.33 ± 0.35 n = 15 0.32 ± 0.27 n = 14 3.99 ± 0.40 n = 48 4.10 ± 0.40 n = 93 1.56 ± 0.56 n = 12 2.31 ± 0.90 n = 92 0.39 ± 0.11 n = 12 0.56 ± 0.19 n = 90 0.05 ± 0.07 n = 50 0.05 ± 0.08 n = 76 2009 145 146 Vg titer (μg/μl) dispersers isolated females 2008 144 ovary size (mm2) size-scaled ovarian index (ovary / head) 147 148 149 ESM F 1 Observation nests used to study queens, solitary females, and workers. (a) Each 150 nest was constructed with a standardized piece of balsa wood. (b) The wood was fixed 151 between two pieces of transparent acrylic, covered with opaque fabric, and hung under a 152 plastic roof in the BCI forest. (c) New foundresses build a sawdust collar just inside the nest 153 entrance, and this is easily recognizable as a sign of new nest activity. 154 155 156 ESM F 2 SDS–PAGE gel with Coomassie brilliant blue staining (a) and Western blot (b) 157 with the Vg antibody sampled from M. genalis. m: dual colour molecular mass marker (Bio- 158 Rad); c: cage-reared isolated females; q: queens from observation nests; w: workers from 159 observation nests; d: dispersers from natural nests; β- galactosidase standards not pictured. 160 The marker in lane 1 of (b) is MagicMark XP Western Standard (Invitrogen) . Arrows 161 indicate Vg. 162 163 164 REFERENCES 1 Kapheim, K. M. 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