Cell Biology Application of Microscopy Class 4: Optical Aberrations and Objective Lens Arlene Wechezak, Algae and diatoms (10X) 國立交通大學生物科技學系 黃兆祺老師 Numerical Aperture 國立交通大學生物科技學系 黃兆祺老師 2 Numerical Aperture The light gathering ability of an objective NA = n • sin(µ) n = refractive index µ = ½ angular aperture NA is directly related to resolution, brightness, working distance http://micro.magnet.fsu.edu/primer/index.html 國立交通大學生物科技學系 黃兆祺老師 3 Numerical Aperture and Working Distance NA is inversely proportional to working distance http://micro.magnet.fsu.edu/primer/index.html 國立交通大學生物科技學系 黃兆祺老師 4 Numerical Aperture and Image Brightness Image brightness is proportional to NA Higher NA is better at gathering light F (transmitted) = 104 NA2/M2 Separate objective/condenser F (reflected) = 104 (NA2/M)2 Objective acts as condenser 國立交通大學生物科技學系 黃兆祺老師 5 Transmitted Light (Diascopic Illumination) Transmitted light microscopy is the type of microscopy where the light is transmitted from a source on the opposite side of the specimen from the objective. Usually the light is passed through a condenser to focus it on the specimen. http://micro.magnet.fsu.edu/primer/index.html 國立交通大學生物科技學系 黃兆祺老師 6 Reflected Light (Episcopic Illumination) Reflected light microscopy is often referred to as incident light, episcopic illumination, or metallurgical microscopy, and is the method of choice for fluorescence and for imaging specimens that remain opaque even when ground to a thickness of 30 micrometers. http://micro.magnet.fsu.edu/primer/index.html 國立交通大學生物科技學系 黃兆祺老師 7 Reflected Light (Episcopic Illumination) (a) Surface of an integrated circuit (reflected DIC). (b)The jewel bearing of a watch mechanism (reflected brightfield). (C) Surface structure of a superconducting wire (reflected darkfield). (d) Magnetic thin film (reflected polarized light). http://micro.magnet.fsu.edu/primer/index.html 國立交通大學生物科技學系 黃兆祺老師 8 Numerical Aperture and Image Brightness F (trans) = 104 NA2/M2 F (refl) = 104 (NA2/M)2 Separate objective/condenser Objective acts as condenser 國立交通大學生物科技學系 黃兆祺老師 9 NA and Resolution 國立交通大學生物科技學系 黃兆祺老師 10 Numerical Aperture and Resolution Resolved Not resolved Resolution (r) = 0.61 • λ/NA = 0.61 • λ/[(NAobjective + NAcondenser)/2] http://micro.magnet.fsu.edu/primer/index.html 國立交通大學生物科技學系 黃兆祺老師 11 Numerical Aperture and Resolution Low NA http://micro.magnet.fsu.edu/primer/index.html High NA 國立交通大學生物科技學系 黃兆祺老師 12 Microscope Magnification http://micro.magnet.fsu.edu/primer/index.html 國立交通大學生物科技學系 黃兆祺老師 13 Magnification 國立交通大學生物科技學系 黃兆祺老師 14 Magnification vs Resolution 200x, 0.4 NA 200x, 0.1 NA “Empty magnification” is a situation where the image is magnified, but no additional detail is resolved. http://www.microscopyu.com/articles/formulas/formulasmagrange.html 國立交通大學生物科技學系 黃兆祺老師 15 Range of Useful Magnification 500 ~ 1000x NA of Objective http://micro.magnet.fsu.edu/primer/index.html 國立交通大學生物科技學系 黃兆祺老師 16 Magnification vs Resolution Dry – up to 1.0 NA http://micro.magnet.fsu.edu/primer/index.html Oil – up to 1.51 NA (theoretical) 國立交通大學生物科技學系 黃兆祺老師 17 Aberration 國立交通大學生物科技學系 黃兆祺老師 18 Aberrations in Lens • On-axis aberration Chromatic Spherical • Off-axis aberration Coma Astigmatism Field curvature • Geometrical distortion Barrel distortion Pincushion distortion 國立交通大學生物科技學系 黃兆祺老師 19 On-axis: Chromatic Aberration Blue halo around edge shows the chromatic aberration • Wavelengths are not refracted equally; colored halos form around object • Can be corrected by using multiple lenses with different color-dispersion http://micro.magnet.fsu.edu/primer/java/aberrations/chromatic/index.html 20 On-axis: Spherical Aberration • The best focus, in an imperfectly or non-corrected lens, will be somewhere between the focal planes of the peripheral and axial rays, an area known as the “disc of least confusion”. • Can be introduced by improper microscope tube lens, coverslip thickness (deviate from 0.17 mm), or immersion oil. • Can be corrected by using lens elements of different shapes to bring the more central and more peripheral rays to common focus. http://micro.magnet.fsu.edu/primer/java/aberrations/spherical/index.html 21 On-axis: Spherical Aberration • Spherical aberrations are not only influenced by the optical properties of an objective but also by the properties of the cover glass and mounting medium. • In practice, there are mainly two factors that considerably intensify spherical aberration: 1. The difference in the refractive indices of the immersion medium and mounting medium. The more the refractive index of the immersion medium deviates from the refractive index of the mounting medium, the more marked the spherical aberration. 2. The distance between the cover glass and the specimen structure to be examined. In general, spherical aberration intensifies as the sample depth increases. Ideally, therefore, the specimen should be positioned directly under the cover glass. 國立交通大學生物科技學系 黃兆祺老師 22 Coverslips Thickness The standard thickness of the coverslips is 0.17 mm (#1.5!!), all of the unadjustable objectives are spherically corrected to this thickness. #1 (0.15 mm) coverslips are too thin and #2 (0.22 mm) are too thick. 國立交通大學生物科技學系 黃兆祺老師 23 On-axis: Spherical Aberration http://micro.magnet.fsu.edu/primer/index.html 國立交通大學生物科技學系 黃兆祺老師 24 Coverslips Correction Collar Compensation for cover glass thickness can be accomplished by adjusting the mechanical tube length of the microscope, or by the utilization of specialized correction collars that change the spacing between critical lens elements inside the objective barrel. http://micro.magnet.fsu.edu/primer/java/aberrations/slipcorrection/index.html 25 Off-axis: Field Curvature • • • The effect of field curvature means that a flat structure is imaged on a curved surface. This artifact is the natural result of using lenses that have curved surfaces. Can be corrected using flat-field objectives (Plan or Plano). http://micro.magnet.fsu.edu/primer/java/aberrations/curvatureoffield/index.html 26 Off-axis: Field Curvature 國立交通大學生物科技學系 黃兆祺老師 27 Geometrical Distortion Image distortion is an aberration commonly observed in stereomicroscopy, and is manifested by changes in the shape of an image rather than the sharpness or color spectrum. http://micro.magnet.fsu.edu/primer/java/aberrations/distortion/index.html 28 Objective Lens 國立交通大學生物科技學系 黃兆祺老師 Objectives This is a 250x long working distance “apochromat”, which contains 14 optical elements that are cemented together into three groups of lens doublets, a lens triplet group, three individual internal single-element lenses, a hemispherical front lens, and a meniscus second lens. 國立交通大學生物科技學系 黃兆祺老師 30 Objectives 31 Objectives 國立交通大學生物科技學系 黃兆祺老師 32 Infinity Optical System 國立交通大學生物科技學系 黃兆祺老師 33 Objective Corrections 國立交通大學生物科技學系 黃兆祺老師 34 Achromats • Least expensive and least corrected. • Only blue (486 nm) and red (656 nm) colors are corrected for chromatic aberration. • Only green color (546 nm) is corrected for spherical aberration. • Not corrected for field curvature. • Plan Achromats – corrected for field curvature. 國立交通大學生物科技學系 黃兆祺老師 35 Fluorites (Semi-Apochromats) • Named for the mineral fluoride was originally used in their construction. • Chromatically corrected for 2-3 colors. • Spherically corrected for 2-3 colors. • Not corrected for field curvature. • Higher numerical aperture (NA). • Moderately expensive. • Plan Fluorite – corrected for field curvature. 國立交通大學生物科技學系 黃兆祺老師 36 Apochromats • Most correction and most expensive. • Chromatically corrected across the entire visible light spectrum. • Spherically corrected across the entire visible light spectrum. • Highest numerical aperture (NA). • Usually available as Plan Apochromats – corrected for field curvature. 國立交通大學生物科技學系 黃兆祺老師 37 Objective Corrections 國立交通大學生物科技學系 黃兆祺老師 38 Working and Parfocal Distance Working distance is a trade-off with numerical aperture (NA)! There are specially designed long-working distance objectives for tissue culture Covslip surface Parfocal objective lenses are lenses that stay in focus when switched 國立交通大學生物科技學系 黃兆祺老師 39 Field of View The diameter of the field in an optical microscope is expressed by the field-ofview number, or simply the field number, which is the diameter of the view field in millimeters measured at the intermediate image plane. Field Size = Field Number (fn) ÷ Objective Magnification (M) 國立交通大學生物科技學系 黃兆祺老師 40 Understand Your Objectives What’s the magnification? What’s the immersion medium? What’s the NA? What’s the coverslip thickness? 國立交通大學生物科技學系 黃兆祺老師 41 Contrast Microscopy Objectives 國立交通大學生物科技學系 黃兆祺老師 42 UV Light Objectives Fluorescence objectives are designed with quartz and non-fluorescent glasses that have high transmission from the ultraviolet (down to 340 nm) through the infrared regions of the electromagnetic radiation spectrum. 國立交通大學生物科技學系 黃兆祺老師 43 http://www.microscopyu.com/articles/fluorescence/filtercubes/ultraviolet/uv2a/uv2aindex.html Reflected Light Objectives Objectives designed to be used with reflected (episcopic) illumination have a special construction consisting of a 360-degree hollow chamber surrounding the centrally located lens elements. The outer system functions as a "condenser" and the inner system as a typical objective. 國立交通大學生物科技學系 黃兆祺老師 44 Adjustable NA Objectives Specimens with unusually high fluorescence or very bright darkfield specimens often induce image flare by light emitted from areas outside the focal plane. To compensate for this artifact, manufacturers offer high NA objectives that are equipped with an internal iris diaphragm to increase image contrast during imaging. 國立交通大學生物科技學系 黃兆祺老師 Water Immersion Objectives The dipping cone is tapered at a 43-degree angle to allow a steep inclination of approach providing easy access to the sample by the manipulator or microelectrodes while keeping the specimen and objective immersed in solution. These objectives also have long working distances. 國立交通大學生物科技學系 黃兆祺老師 46 Distortion in Aqueous Media distorted undistorted 國立交通大學生物科技學系 黃兆祺老師 47 Condenser 48 國立交通大學生物科技學系 黃兆祺老師 Condenser Immersion oil is needed for high NA (>1.0) condensers!! http://micro.magnet.fsu.edu/primer/java/kohler/condenseraperture/index.html 49 Condenser Aberration Correction X = corrected 國立交通大學生物科技學系 黃兆祺老師 50 Immersion Medium Affects NA NA = n • sin(µ) 國立交通大學生物科技學系 黃兆祺老師 51 Homogenous Immersion System Homogeneous Immersion System is the ideal situation to achieve maximum numerical aperture and resolution in an optical microscope. In this case, the refractive index and dispersion of the objective front lens, immersion oil, substage condenser front lens, and the mounting medium are equal or near equal. 國立交通大學生物科技學系 黃兆祺老師 52 Immersion Medium 國立交通大學生物科技學系 黃兆祺老師 53 Key Immersion Medium Features 1. Match the refractive index of the lens 2. Non-drying 3. Inert to optical surface coatings 4. Non-toxic (polychlorinated biphenyls) 5. Easy to remove 6. Non-fluorescent 國立交通大學生物科技學系 黃兆祺老師 54 Common Immersion Media Refractive index for glass ~1.52 IR compatible UV compatible A primary problem with common immersion media is their inherently high absorption characteristics in the UV or IR region of the spectrum. 國立交通大學生物科技學系 黃兆祺老師 55