1 Appendix 2 3 Supplementary methods enzyme assays 4 All larvae were homogenized on ice in a mixture of 150 µl cacodylate buffer (0.01 mol/L 5 Na-Coc, 0.005 mol/L CaCl2) and 150 µl proteinase inhibitor (Sigma®, P-2714). Two 6 hundred µl of the supernatant was separated to measure PO and total PO activity. To the 7 remaining pellet and supernatant PBS buffer (pH 7.4) was added (1:23 w:v dilution). The 8 resulting supernatant was used to measure SOD and CAT activity. For each animal, we 9 also assessed protein content using the Bradford method (Bradford 1976). 10 The activity of PO and total PO was quantified following the protocol by Stoks et 11 al. (2006). Shortly, 20 µl of the sample was added to microtiter plate wells. ProPO was 12 activated using 5 µl chymotrypsin (5 mg/1 mL aqua dest) whereas 5 µl of aqua dest was 13 added to wells in which PO was measured. The mixture was incubated for five minutes at 14 room temperature. Afterwards, 25 µl PBS and 150 µl L-DOPA (10 mM in cacodylate 15 buffer) was added. The reaction was allowed to proceed for 30 minutes at 30°C and 16 readings were taken every 20 s on a plate reader (BioRad, Benchmark Plus). Enzyme 17 activity was measured as Vmax (the slope of the reaction curve during the linear phase of 18 the reaction that transforms L-DOPA into dopachrome under non-limiting substrate 19 concentrations). 20 Activity of the antioxidant enzymes was measured following the protocols by De 21 Block and Stoks (2008). SOD activity was quantified closely following the protocol 22 described in the SOD Assay Kit-WST (Fluka, Buchs, Austria), which measures the 23 formation of a formazan dye upon reduction of the tetrazolium salt WST-1 with 24 superoxide anions. We added 200 ml of WST working solution and 20 ml of enzyme 25 working solution to 20 ml of the supernatant. This mixture was incubated for 20 min at 26 37°C followed by reading the absorbance at 450 nm. The activity of CAT was quantified 27 following the protocol of Aebi (1984). The supernatant was further diluted 16 times with 28 PBS (pH 7.4). To 20 ml of the diluted supernatant, we added 80 ml of PBS and 100 ml of 29 20 mM H2O2. 30 One SOD unit was defined as the amount of enzyme necessary to decrease the 31 colorimetric reaction with 50% at 37°C. One unit of CAT activity was defined as the 32 amount that decomposes 1 µmol H2O2/min at 30°C and pH 7.4. 33 34 Additional measurements 35 To obtain additional information to better understand the observed downregulation of PO 36 24h after autotomy we performed additional physiological measurements on a new set of 37 L. viridis reared and manipulated in an identical way as the larvae of the first experiment. 38 To evaluate the possibility of a transient upregulation of PO after wounding and to assess 39 the duration of the observed downregulation of PO, we scored the activity of PO at 40 additional time points after autotomy. We killed the larvae by flash freezing them 0h, 41 0.5h, 1h, 2h and 48h after autotomy. We also assessed two other physiological variables 42 24 after autotomy on an extra set of larvae. To determine whether overall protein 43 synthesis rates were decreased 24 after autotomy we measured the RNA:DNA ratio. To 44 evaluate the possibility that the observed downregulation of PO and SOD activity was 45 due to hemolymph loss we measured the activity of another enzyme, trehalase, not related 46 to immune function and antioxidant defence. 47 48 Measurement of RNA/DNA ratio and trehalase 49 RNA/DNA ratios were quantified following a modified protocol of Melzer et al. (2005). 50 Nucleid acid concentrations were determined using a modified fluorescent dye-based 51 method and ethidium bromide (EB, Sigma®, E1385) was used as a fluorophore. The 52 trehalase activity was measured by estimating the glucose produced by hydrolysis of 53 trehalose as described by Worland et al. (1998). 54 First, larvae were homogenized on ice in 0.04 M Na/Na2 buffer pH 7.0 (1:1 w:v 55 dilution) in RNA-se free eppendorf tubes. An aliquot of 50 µl of the supernatant was 56 separated to measure trehalase activity. To the remaining pellet and supernatant 60 µl 57 extraction buffer was added (50 mM Tris pH 7.5, 50 mM EDTA, and 0.05% SDS). 58 Homogenates were placed on a shaking mill for 20 min at maximum power (Labinco 59 L46), then sonicated three times for 10 s and again shaken for 5 min. The resulting 60 supernatant was diluted (1:40) in TE buffer (50 mM Tris pH 7.5, 50 mM EDTA) and 61 used in the assay. All homogenization and preparatory steps were performed on ice and 62 by use of nuclease free materials. 63 Then, samples were placed in wells of black 96-well microtiter plates (Greiner 64 655209). One hundred µl of each sample was used for the determination of total 65 fluorescence by adding 2 µl of EB (100 µg/ml). TE buffer was used as a control. After 15 66 min of incubation in the dark, fluorescence was quantified by exciting the samples at 530 67 nm and measuring their emission at 590 nm (Tecan Infinite M200). This gave an estimate 68 of the combined amounts of DNA plus RNA. For the quantification of the amount of 69 DNA, 100 µl of all samples were treated with 1 µl RNAse (20 mg/ml, Ribonuclease A 70 from bovine pancreas, Fluka 83831) in order to assess the proportion of fluorescence 71 caused by EB intercalating with DNA. Wells were incubated at room temperature for 1 h 72 to promote digestion of RNA, where after 2 µl of EB was added. Fluorescence was 73 recorded 15 min after EB incubation in the dark. Standard curves were established from 74 RNA (R6625) and DNA (D4764). Samples were run in triplo and mean values for nucleic 75 acid concentrations were taken. 76 To measure trehalase activity, the reaction mixture contained 80 µl milliQ, 80 µl 77 citrate buffer (50 mM sodium citrate, 0.1 M Na2HPO, pH 5.4), 15 µl sample and 20 µl 78 trehalose (0.1 M). As a control, the reaction mixture was incubated with milliQ instead of 79 trehalose. After incubation at 37°C for 30 min the reaction was stopped by boiling for 3 80 min. The amount of glucose of the samples and their controls was measured using the 81 glucose assay reagent (Sigma A7420). Each well contained 75 µl milliQ, 25 µl sample 82 and 200 µl reagent. After 20 min incubation at 30°C absorbance was quantified at 340 83 nm. Glucose concentrations were calculated by means of a glucose standard curve. All 84 samples were measured in duplo. Trehalase activity is expressed as µg glucose/min under 85 assay conditions. 86 87 Statistical analyses 88 We ran separate ANOVAs for each response variable (PO, RNA/DNA ratio, trehalase) 89 with lamellae autotomy as the independent variable and lamellae autotomy as 90 independent variable. For PO we compared the activity of PO at the different time points 91 after autotomy with the control group (initial PO level at 0h) by Dunnett’s a posteriori 92 tests. 93 94 Results 95 Compared to the initial PO levels (mean ± SE; 0h: 170.47 ± 9.45), there was no 96 difference after 0.5 h (154.76 ± 8.32), 1h (186.83 ± 9.20) and 48h (182.19 ± 11.86) (all p 97 > 0.640). Yet, we found a decreased activity of PO 2h after autotomy (123.69 ± 12.84) 98 (F1,22 = 8.60; p = 0.009). 99 There was no effect of autotomy on the RNA/DNA ratio (with lamellae: 2.311 ± 100 0.098, without lamellae: 2.304 ± 0.098) (F1,32 = 0.003; p = 0.954) and the trehalase 101 activity (with lamellae: 0.092 ± 0.014, without lamellae: 0.105 ± 0.014) (F1,32 = 0.46; p = 102 0.505). 103 104 References 105 Aebi, H. 1984. Catalase in vitro. Methods Enzymol. 105, 121-126. 106 Bradford, M.M. 1976. Rapid and sensitive method for quantitation of microgram 107 quantities of protein utilizing principle of protein-dye binding. Anal. Biochem. 72, 108 248-254. 109 De Block, M. & Stoks, R. 2008. Compensatory growth and oxidative stress in a 110 damselfly. Proc. R. Soc. B 275, 781-785. (doi:10.1098/rspb.2007.1515) 111 Melzner, F., Forsythe, J.W., Lee, P.G., Wood, J.B., Piatkowski, U. & Clemmesen, C. 112 2005. 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