Supplemental Figure 1. Neuronal expression of UAS-n-Syb-pH does not affect function or morphology at the NMJ. (A) Excitatory postsynaptic potentials (EPSP) recorded at muscle 6 in segment A3 in wild type (wt) and animals expressing UAS-n-Syb-pH (n-Syb-pH) under the control of a neuronal GAL4 driver (elaV3E1GAL4). There is no difference in the average EPSP amplitude or the spontaneous miniature EPSP (mEPSP) amplitudes between these genotypes. (B) A representative train of EPSPs recorded from an n-Syb-pH expressing synapse (10 Hz for 3 min, 2.0 mM Ca2+). EPSP amplitudes are constant throughout the stimulus train, consistent with normal vesicle recycling (n = 5). Inset: representative EPSPs at two different times during the stimulus train. (C) Endocytosis is normal in n-Syb-pH animals. Synapses at muscle 6/7 in wild type (n = 5) and n-Syb-pH (n = 5) animals were bathed in 10 M FM4-64 and stimulated for 1 min at 30 Hz in HL3 + 0.5 mM Ca2+, then washed in HL3 + 0 mM Ca2+ for 5 minutes, and imaged (load). Synapses were stimulated again (30 Hz, 1 min in HL3 + 0.5 mM Ca2+) and re-imaged (unload). Mean FM4-64 fluorescence was measured for each condition. There is no significant difference in FM4-64 fluorescence intensity between genotypes. (D) Morphological analysis at n-Syb-pH expressing synapses. Synaptic bouton number was counted at muscles 6 and 7 in segments A2–A5 in wild type (n = 14) and n-Syb-pH (n = 19) animals. There is no significant difference in bouton numbers. Supplemental Figure 2. Synapto-pHluorins exhibit pH-sensitivity at the Drosophila NMJ. (A) Acidic saline (black bar) quenches the fluorescence of surface n-Syb-pH expression. (B) Membrane-permeable NH4Cl (black bar) increases fluorescence intensity of n-Syb-pH in the presynaptic terminal, revealing previously quenched n-Syb-pH at synaptic vesicles. Representative trials of individual synapses are shown. (C) Syt I4C-bound FlAsH bleaches more rapidly than n-Syb-pH. Values are calculated as the change in fluorescence relative to background (∆F/F) and normalized to the first data point. Syt I4C expressing synapses (closed circles) were labeled with FlAsH and illuminated for 120 seconds. FlAsH fluorescence bleaches to near background levels during this time. N-Syb-pH expressing synapses (open circles) were imaged identically for 120 seconds in the absence of stimulation. This fluorescence represents the basal surface expression of n-Syb-pH that has been observed in other systems17-19. During the 120 seconds of illumination, the surface n-Syb-pH fluorescence bleaches by less than 1%. (D) All genetic backgrounds used throughout this study show the indistinguishable n-Syb-pH recycling. Genotypes shown: genotype 1 = UAS-n-Syb-pH,elaV3E1 , genotype 2 = UAS-Syt4C,sytAD4/sytD27;UAS-n-Syb-pH/elaV3E1 , genotype 3 = w-,shits2;UASSyt4C,sytAD4/sytD27;UAS-n-Syb-pH/elaV3E1. Supplemental Figure 3. Images demonstrating n-Syb-pH intensity changes at the NMJ following the shift from the restrictive to the permissive temperature. Synapses are from the same gentoype in the top panels (control, without FlAsH ligand) and bottom panels (FlAsH, with FlAsH ligand). Scale represents arbitrary fluorescence units. Supplemental Movie 1. Time lapse movie showing changes in n-Syb-pH fluorescence intensity for the synapse shown in Figure 1a, b.