Brazilian Symposium on Bioinformatics
BSB 2005
São Leopoldo, RS (campus Unisinos), 27 a 29 de julho de 2005
Programação
Legendas:
ST – Sessão Técnica
PI – Palestra Internacional
PN – Palestra Nacional
Quarta – Feira 27 de Julho de 2005
8:20 – 8:30 abertura
8:30 – 12:45 STs; chair: J. C. Setubal
8:30 – 9:00 Perturbing Thermodynamically Infeasible Metabolic Networks . Rakesh
Nigam and S. Liang
9:00 – 9:30 Protein Cellular Localization with Multiclass Support Vector Machines and
Decision Trees. Ana Lorena and André Ponce de Leon F. de Carvalho
9:30 – 10:00 Combining one-class classifiers for robust novelty detection in gene
expression data. Eduardo Spinosa and André Ponce de Leon F. de Carvalho
10:00 – 10:30 Evaluation of the contents of partitions obtained with clustering gene
expression data. Katti Faceli, André Ponce de Leon F. de Carvalho, and Marcilio de
Souto
10:30 – 10:45 - INTERVALO
10:45 – 11:45 PI: Searching for Non-Coding RNA.
Larry Ruzzo (University of Washington)
11:45 – 11:55 Sequence Motif Identification and Protein Family Classification Using
Probabilistic Trees. Florencia Leonardi and Antonio Galves
11:55 – 12:05 Prediction of Myotoxic and Neurotoxic Activities in Phospholipases A2
from Primary Sequence Analysis. Fabiano Pazzini, Fernanda da Silva Oliveira,
Hermes Luis Neugebauer Amorim, and Jorge Guimaraes
12:05 – 12:15 Genomics and gene expression management tools for the
Schistosoma mansoni cDNA microarray project. Thiago Venancio, Ricardo DeMarco,
Katia Oliveira, Ana Carolina Quirino Simoes, Aline Maria da Silva, and Sergio
Verjovski-Almeida
12:15 – 12:25 SAM method as an approach to select candidates for human prostate
cancer markers. Ana Carolina Quirino Simoes, Aline Maria da Silva, Sergio
Verjovski-Almeida, and Eduardo Reis
12:25 – 12:35 New EST trimming strategy. Christian Baudet and Zanoni Dias
ALMOÇO
14:00 – 18:45 STs; chair: S. Verjovski-Almeida.
14:00 – 15:00 PI: Cyberinfrastucture for PathoSystems Biology.
Bruno Sobral (Virginia Bioinformatics Institute)
15:00 – 15:30 Machine Learning Techniques for Predicting Bacillus Subtilis
Promoters. Meika Monteiro, Luiz Gonçalves, and Marcilio de Souto
15:30 – 16:00 An improved Hidden Markov model methodology to discover
prokaryotic promoters. Ney Lemke and Adriana dos Reis
16:00 – 16:15 – INTERVALO
16:15 – 16:45 Modeling and Property Verification for Lactose Operon Regulation .
Marcelo Cezar Pinto, Luciana Foss, José Carlos Mombach, and Leila Ribeiro
16:45 – 17:15 YAMONES: A Computational Architecture for Molecular Network
Simulation. Guilherme Bedin and Ney Lemke
17:15 – 17:45 Structure prediction and docking studies of chorismate synthase from
Mycobacterium tuberculosis. Cláudia Fernandes, Diógenes Santos, Luiz Basso, and
Osmar Souza
17:45 – 18:15 Analysis of the effects of multiple sequence alignments in protein
secondary structure prediction. Georgios Joannis Pappas Jr. and Shankar
Subramaniam
18:15 – 18:45 Segmentation and centromere locating methods applied to fish
chromosomes images. Elaine Faria, Denise Guliato, and Jean Santos
21:00 – Programação Social
Churrascaria Galpão Crioulo
End.: Av. Loureiro da Silva, s/n – Parque Harmonia - Centro – Porto Alegre
Fone: (51) 3226.8194
Quinta – Feira 28 de Julho de 2005
8:30 – 12:45 STs; chair: J. C. Mombach
8:30 – 8:40 A Modification of the Landau-Vishkin Algorithm via Suffix Arrays. Rodrigo
Miranda and Maurício Ayala-Rincon
8:40 – 8:50 The BioPAUÁ Project: A Portal for Molecular Dynamics Using Grid
Environment. Alan Wilter, Carla Osthoff, Cristiane Oliveria, Diego E. B. Gomes,
Eduardo Hill, Laurent E. Dardenne, Patricia M. Barros, Pedro A. Loureiro, Reynaldo
Novaes, and Pedro G. Pascutti
8:50 – 9:00 Analysis of structure prediction tools in mutated MeCP-2. Ivan Sendin
and Dino Franklin
9:00 – 9:10 Protein loop classification using Artificial Neural Networks . Armando
Vieira
9:10 – 9:20 VIZ --- A Graphical Open-Source Architecture for Use in Structural
Bioinformatics. Ricardo Czekster and Osmar Souza
9:30 – 10:00 Tests of Automatic Annotation Using KOG Proteins and ESTs From 4
Eukaryotic Organisms. Mauricio Mudado, Estevam Bravo-Neto, and J. Miguel Ortega
10:00 – 10:30 Diet as a pressure on the amino acid content of proteomes. Francisco
Prosdocimi and J. Miguel Ortega
10:30 – 10:45 - INTERVALO
10:45 – 11:45 PI: Analysis of Genomic Tiling Microarrays for Transcript
Mapping and the Identification of Transcription Factor Binding Sites.
Joel Rozowsky (Yale University)
11:45 – 12:15 A method for comparing three genomes. Guilherme Telles, Marcelo
Brigido, Nalvo Almeida, Carlos Viana, Daniel Anjos, and Maria Emilia Machado Telles
Walter
12:15 – 12:45 Comparison of Genomic DNA to cDNA Alignment Methods. Miguel
Galves and Zanoni Dias
ALMOÇO
14:00 – 16:00 STs; chair: Ney Lemke
14:00 – 15:00 PI: Differential Gene Expression in the Auditory System.
Irene Gabashvili (HP labs)
15:00 – 16:00 PI: Understanding biological information: the example of signals
for the splicing of messenger RNA precursors.
Steve Mount (University of Maryland)
16:00 – 16:15 – INTERVALO
16:15 – 18:15 – ASSEMBLÉIA GERAL SBC
21:00 – Programação Social
Factory Beer
End.: R. Independência, 1040 – São Leopoldo
Fone: (51) 590.2511
Sexta – Feira 29 de Julho de 2005
8:30 – 11:15 STs; chair: Guilherme Telles
8:30 – 8:40 Selection of Data Sets of Motifs as Attributes in the Process of
Automating the Annotation of Proteins' Keywords. Ana Bazzan and Cassia Trojahn
dos Santos
8:40 – 8:50 Bioinformatics Tools for HIV-1 Identification in Southern Brazilian
States. Ardala Breda, Cláudia Fernandes, Sabrina Almeida, Maria Lúcia
Rossetti, Rosângela Rodrigues, and Luís Fernando Brígido
8:50 – 9:00 Fact and task oriented system for genome assembly and annotation.
Luciano Digiampietri, Julia Perdigueiro, Aloisio Almeida, Daniel
Faria, Eric Ostroski, Gustavo Costa
9:00 – 9:10 A Clustering Strategy to Find Similarities in Mycoplasma Promoters.
Joao Valiati and Paulo Engel
9:10 – 9:20 Gene prediction by syntenic alignment. Said Adi and Carlos Eduardo
Ferreira
9:20 – 9:30 Real Time Immersive Visualization and Manipulation of the Visible
Human Data Set. Ilana Souza, Claudiney Sanches, André Miranda, Patrícia
Trautenmüller, Thiago Tognoli, Marcelo Zuffo
9:30 – 9:40 K49 versus D49 Class II PLA2 tridimensional structures. Natalia Martins,
Bernard Maigret
9:40 – 9:50 Phage Integrases Classification and Putative Insertion and Deletion
Islands Determination (PInDels) Using the Xanthomonas and Xylella complete
genomes. Leandro Moreira, Robson de Souza, Luciano Digiampietri, Ana Claudia
Rasera da Silva
10:00 – 11:00 PN: A especificidade da Computação Biológica como princípio
básico de uma nova associação: Associaçao Brasileira de Bioinformática e
Biologia Computacional (AB3C)
Ana Tereza Vasconcelos (LNCC)
11:00 – 11:15 Premiação e encerramento do BSB2005
11:15 – 12:15 – ENCERRAMENTO SBC 2005