Dajee and Lazarov et al Legends for Supplementary Figures Supplementary Table I. Summary of clinical and histologic findings with regenerated human skin tissue grafted to immune deficient mice. Supplementary Table II. Summary of tumor formation in mice after subcutaneous injection of human keratinocytes expressing Ras and NF-B subunits or Ras and IB. Supplementary Fig. 1. Features of Ras-IBepidermal tumorigenesis. (A) Failure to rescue Ras growth inhibition by all 5 active NF-B subunits. Proliferation of primary human epidermal cells transduced with the vectors noted was determined, with cell numbers shown at 72 hours after transduction. Data represents triplicate independent transductions for each vector combination +/-S.D. (B) Appearance of human skin regenerated on scid mice from primary human epidermal cells expressing either marker gene transduction control or both oncogenic H-RasG12V (Ras) and IBM. Each image represents an independently transduced human tissue specimen. (C) p65 immunostain of skin tissue from E16.5 RelA+/+ and RelA-/- mice. Note nuclear distribution of p65 protein (brown) in epidermis of wild-type mice and lack of detection in RelA-/- tissue; counterstaining is with methyl green. (D) Expression of H-Ras and phosphorylated active ERK1/ERK2 (MAPK*) protein in regenerated epidermal tissue expressing either Ras-IB or marker control compared to normal patient skin (NL) and a spontaneously arising SCC (patient SCC; data representative of SCC tissue from 4 unrelated patients). Supplementary Fig. 2. CDK4 mRNA expression as a function of p65 activation. CDK4 mRNA levels are unchanged in response to p65 activation. Northern blotting is shown with CDK4 mRNA levels at a series of timepoints after expression of active p65, normalized and quantitated to -actin loading control on the same lane. Supplementary Fig. 3. Cell proliferation and hTERT protein expression. (A) CDK4 rescues epidermal growth inhibition by oncogenic Ras. Proliferation of primary human epidermal cells transduced with the vectors noted was determined, with cell numbers shown at 96 hours after transduction. Data represents triplicate independent transductions for each vector combination +/-S.D. Study of the functional and mechanistic aspects of Ras interactions with CDK4 are beyond the size constraints of this manuscript and represent the focus of another body of work. (B) Expression of hTERT protein in human epidermal tissue expressing Ras-IBand LacZ control at 8 weeks in vivo. 1 Dajee and Lazarov et al Immunoblots are shown, blots were stripped and re-probed with antibodies to -actin. Optical densitometric quantitation normalized to actin control is shown below each hTERT band; control hTERT level was assigned a relative value of 1.0. (C) Circulating antibodies to laminin 5 [Sera 198] and 64 integrin [Sera 578]. Supplementary Fig. 4. Verification of full-length protein expression after retroviral gene transfer. 18 hours following retroviral gene transfer, extracts were prepared from wild-type and mutant primary human epidermal cells and immunoblotted with antibodies to the introduced gene products. All blots were stripped and reprobed with antibody to -actin control shown in bottom panels to assure equal loading, transfer and extract quality. (A) Expression of H-RasG12V and IBM in primary keratinocytes from normal patients. Note that the stabilized IBM mutant migrates lower on the gel than endogenous IB due to deletion of C-terminal PEST sequences. Cells were serially transduced with vectors noted at the top of the panels and immunoblotted with antibodies noted at the left of each panel. (B) Expression of H-RasG12V, IBM, laminin 5 3 and 4 integrin in primary keratinocytes from genetically characterized patients with either laminin 5 3-deficient [left panel] or 64 integrin-deficient [right panel] junctional epidermolysis bullosa. Cells were serially transduced with vectors noted at the top of the panels [laminin 5 3 expression vector=Lam5 and 4 integrin subunit expression vector=4] and immunoblotted with antibodies noted at the left of each panel. Supplementary Fig. 5. Ras and IB expressing tumor cells display a normal diploid karyotype and lack evidence of chromosomal translocations. Cells were isolated from subcutaneous and pulmonary tumors after 4 weeks of growth in vivo and karyotype analysis was performed, representative data shown. (A) Giemsa banding (B) Spectral karyotype analysis with fluorescence in situ hybridization (SKY-FISH). 2