Wisniewski et al. 1 ONLINE REPOSITORY MATERIALS 2 3 Julia A. Wisniewski, MD1,2*, Scott P. Commins, MD, PhD1,2*, Rachana Agrawal, PhD1, Kathryn 4 E. Hulse3, Mingxi D. Yu, MD1, Julia Cronin, MD1, Peter W. Heymann, MD2, Anna Pomes, 5 PhD4, Thomas Platts-Mills, MD PhD1, Lisa Workman, BS1, Judith A. Woodfolk, MBChB, 6 PhD1. 7 *J. Wisniewski and S. Commins contributed equally to this manuscript. 8 9 1 Department of Medicine and 2Department of Pediatrics, University of Virginia Health System, 10 Charlottesville, VA 22908, USA. 3Division of Allergy-Immunology, Feinberg School of 11 Medicine, Northwestern University, Chicago, IL 60611, USA. 4Indoor Biotechnologies, 12 Charlottesville, VA, 22903, USA. 13 14 15 Corresponding author: Judith A. Woodfolk, MBChB, PhD, Allergy Division, PO Box 801355, 16 University of Virginia Health System, Charlottesville, VA 22908-1355. Tel: 434-924-1293; 17 Fax: 434-924-5779; e-mail: jaw4m@virginia.edu. 18 1 Wisniewski et al. 19 Methods 20 Oral Immunotherapy Regimen. 21 Pre-measured doses of peanut flour (Item #RMF171P, Greer, Lenoir, NC; 2g flour = 1g 22 peanut protein) were prepared as previously described.1 The highest tolerated dose (or 3mg) of 23 peanut flour was used as the starting dose for the buildup phase and was given on the UVA 24 Hospital Clinical Research Unit. Thereafter, subjects dosed at home for two weeks. Subjects 25 returned every two weeks for approximately 22 weeks for dose escalations. Doses were 26 increased by 50-100% until a dose of 75mg was attained. Doses were then increased by 25-33% 27 until reaching maintenance dose (306mg roughly equivalent to 1 peanut).2 Three subjects 28 withdrew during the dose escalation phase owing to gastrointestinal symptoms. After dose 29 escalation, subjects were instructed to continue to ingest the maintenance dose daily for at least 30 four months before returning for an open oral food challenge (OFC). During OFC, subjects 31 ingested doses of peanut flour every 10-20 minutes up to a cumulative dose of 5000 mg of 32 protein. Among subjects who experienced a decrease in IgE to peanut below 15kUA/L at the 33 time of OFC, maintenance OIT was discontinued and an open OFC was administered at 1 month 34 after cessation of therapy to assess sustained unresponsiveness. If subjects passed that challenge, 35 they were then asked to keep peanut in their diet 2-3 times per week. No failures were observed 36 in this study arm. All subjects with high IgE (>15kUA/L) passed OFC after 4 months on 37 maintenance therapy, but continued on daily maintenance OIT (300-600mg) with re-testing of 38 IgE to peanut every 6 months. Subjects selected for T-cell studies experienced no significant 39 decrease in IgE to peanut during the pilot study. 40 2 Wisniewski et al. 41 42 Antibodies and Other Reagents. Purified natural Ara h 1, Ara h 2, and Fel d 1 were obtained from Indoor Biotechnologies, 43 Inc. (Charlottesville, VA). The endotoxin content of each allergen was low (≤ 6.0 EU/g). 44 Antibodies against CD3 (PerCP, clone UCHT1), CD25 (brilliant violet-711, clone BC96), IL-4 45 (PerCP/Cy5.5, clone MP4-25D2), IFN- (Alexa 700, clone 4S.B3), IL-17A (APC Cy7, clone 46 BL168), and IL-10 (PECy7, clone JES3-907), were obtained from Biolegend (San Diego, CA). 47 Anti-Foxp3 (PE, clone 236A/E7), anti-IL-13 (FITC, clone PVM13-1), and Foxp3 Fix/Perm kit 48 were purchased from eBioscience (San Diego, CA). Anti-IL-5 (APC, clone JES1-39D10) was 49 purchased from Miltenyi Biotech. Anti-CD8 (PE-TR, clone 3B5), anti-CD14 (PE-TR, clone 50 TüK4), anti-CD19 (PE-TR, clone SJ25-C1) and fixable Aqua Live/Dead Staining Kit were 51 obtained from Invitrogen (Eugene, OR). Mouse IgG used to block Fc receptors prior to cell 52 staining was obtained from Lampire Biological Laboratories (Pipersville, PA). 53 3 Wisniewski et al. 54 References 55 1. Vickery BP, Lin J, Kulis M, Fu Z, Steele PH, Jones SM, et al. Peanut oral immunotherapy 56 modifies IgE and IgG4 responses to major peanut allergens. J Allergy Clin Immunol 57 2013;131:128-34. 58 2. Jones SM, Pons L, Roberts JL, Scurlock AM, Perry TT, Kulis M, et al. Clinical efficacy and 59 immune regulation with peanut oral immunotherapy. J Allergy Clin Immunol. 2009;124:292- 60 300. 61 4 Wisniewski et al. 62 Figure Legends. 63 Figure S1. Study Design for Children Receiving Peanut Oral Immunotherapy. Arrows 64 denote time points of blood draws. All children received oral food challenge after 4 months of 65 maintenance therapy. Grey shading denotes the group from which children were selected for T 66 cell studies. 67 68 Figure S2. Longitudinal Change in Serum IgE During Peanut Oral Immunotherapy. 69 Changes in IgE to peanut and its major allergens were assessed in children who received OIT. 70 Data is shown for serum samples corresponding to 18 children for whom sufficient sample was 71 available for component analysis at baseline. IgE data was obtained on 16 of these subjects at 72 the 12-24 month time point. Dashed line denotes cut-off of 15 kUA/L. NS, not significant. 73 74 Figure S3. Analysis of IL-10+ T Cells in PBMC Cultures Stimulated with Major Peanut 75 Allergens. (A) Percentage of IL-10+ T cells in cultures from PA children and those who 76 received OIT for 12-24 months (n=7 per group). NS, not significant. (B) Representative scatter 77 plots for one subject from each group. 78 79 Figure S4. Analysis of Cytokine-Producing Subpopulations in Peanut-Stimulated Cultures. 80 (A) Pie charts comparing the distribution of T cell subpopulations within IL-4+ and IFN-+ 81 T-cell subsets induced by Ara h 1 in OIT (n=7) and non-OIT (n=5) groups. (B) Effect of 82 increased duration of OIT on the distribution of T-cell subpopulations within Ara h 2-induced 83 IFN-+ T cells in cultures from 2 children. 5 Wisniewski et al. 84 Figure S5. Foxp3 Expression Profiles in Cultures from PA Children. (A) Mean 85 fluorescence intensity (MFI) of Foxp3 expression within T cell subtypes induced by peanut 86 allergens. * p≤0.01 for IL-4+ T cells versus CD25neg, CD25+, IFN-+ and IL-17+ subsets. 6