1
Dunkel et al, Supplemental material
Table S1. List of genes upregulated either in both experiments with clinical isolates (S2 vs. S1)
2 or in both experiments with the two independent UPC2 re-integrant strains (UPC2M2K31 vs.
3 UPC2M2K21). Genes are listed by the CandidaDB gene name ( CandidaDB Name ) and this is
4 the reference name that appears on the Affymetrix arrays. The common gene name ( CGD
5 Name ) according to CGD is listed next where available. The orf19 nomenclature ( orf19
6 Number ) according to Assembly 19 of C. albicans is listed next. The gene ontology annotation
7 ( GO Annotation (Molecular Function) ) describes the molecular function of a gene. Genes that
8 were 1.5-fold upregulated in both replicate experiments are highlighted in yellow.
9
10 Table S2. List of genes downregulated either in both experiments with clinical isolates (S2 vs.
11 S1) or in both experiments with the two independent UPC2 re-integrant strains (UPC2M2K31 vs.
12 UPC2M2K21). Genes are listed by the CandidaDB gene name ( CandidaDB Name ) and is the
13 reference name that appears on the Affymetrix arrays. The common gene name ( CGD Name )
14 according to CGD is listed next where available. The orf19 nomenclature ( orf19 Number )
15 according to Assembly 19 of C. albicans is listed next. The gene ontology annotation ( GO
16 Annotation (Molecular Function) ) describes the molecular function of a gene. Genes that were
17 1.5-fold downregulated in both replicate experiments are highlighted in blue.
18
19 Table S3. List of genes downregulated in both experiments with two independent UPC2
20 disruption strains (UPC2M4 vs. SC5314). Genes are listed by the CandidaDB gene name
21 ( CandidaDB Name ) and is the reference name that appears on the Affymetrix arrays. The
22 common gene name ( CGD Name ) according to CGD is listed next where available. The orf19
23 nomenclature ( orf19 Number ) according to Assembly 19 of C. albicans is listed next. The gene

1
Dunkel et al, Supplemental material ontology annotation ( GO Annotation (Molecular Function) ) describes the molecular function
2 of a gene. Genes that were 1.5-fold downregulated in both replicate experiments are highlighted
3 in blue. The values for the same genes in the UPC2 re-integrant strains (UPC2M2K31 vs.
4 UPC2M2K21) are also included. The values in yellow are upregulated in both replicate
5 experiments.
6
7 Table S4. List of genes upregulated in both experiments with two independent UPC2 disruption
8 strains (UPC2M4 vs. SC5314). Genes are listed by the CandidaDB gene name ( CandidaDB
9 Name ) and is the reference name that appears on the Affymetrix arrays. The common gene
10 name ( CGD Name ) according to CGD is listed next where available. The orf19 nomenclature
11 ( orf19 Number ) according to Assembly 19 of C. albicans is listed next. The gene ontology
12 annotation ( GO Annotation (Molecular Function) ) describes the molecular function of a gene.
13 Genes that were 1.5-fold upregulated in both replicate experiments are highlighted in yellow.
14 The values for the same genes in the UPC2 re-integrant strains (UPC2M2K31 vs. UPC2M2K21)
15 are also included. The values in yellow are upregulated in both experiments. The values in blue
16 are downregulated in both experiments.
17