BIOTECHNOLOGY Biotechnology uses living organisms to create products or facilitate processes i.e. production of HGH verses extraction from cadavers TOOLS Restriction Enzymes proteins made by bacteria that can cut DNA into pieces (bacterial defense) Highly specific: cut nucleic acids at recognition sequences (i.e. BamH1 cuts only at GGATCC) 1000’s exist Sticky end: allows pasting two DNA fragments together Ligation is a process of permanently attaching two pieces of DNA by base pairing of sticky ends Plasmids : small circular pieces of DNA not a part of bacterial chromosome Can replicate independently of the chromosome Transformation: uptake of new pieces of DNA into bacterial plasmids ( both plasmid DNA or recombinant DNA) Cloning: To make an exact copy of a gene, cell, or organism. Allows Creating organisms containing specific genes or livestock to serve as organ donors or blood donors PCR: polymerase Chain Reaction is used to make large amounts of a specific piece of DNA from a very small sample Recombinant DNA is DNA from 2 or more sources Recombinant DNA Technology: Using the above tools, genes are combined from two or more different sources. The recombinant fragment is introduced into a cell that can express that gene. Uses: Mass production of biochemicals needed by other species Creation of new strains of living organisms Production of specific protein sequences Cloning a Protein Cut out gene for the protein of interest using restriction enzyme Insert that gene into a plasmid Transform the bacterial cell with that recombinant plasmid Allow the bacteria to reproduce itself and the plasmid. Harvest and purify the protein made in the bacterial cell Cloning the Organism “Dolly” 1. An udder cell was isolated from a sheep and grown in culture (replicated) 2. An egg was taken from another sheep and its nucleus (DNA) was removed 3. The two cells were fused by electricity. Simulating a fertilization event only in this case the DNA is from one parent. 4. The embryo was implanted into a surrogate mother sheep Dolly (with the exact DNA from the original udder cell. Gel Electrophoresis: a technique that allows separating and sorting proteins and nucleic acid sequences based on their size and charge. Nucleic Acid sequences can be cut using restriction enzymes. Negatively charge fragments move to the positive pole of the gel and separate according to size. Longer macromolecules move through the gel more slowly than do shorter molecules. No two individuals (except identical twins) has the same DNA sequence on homologous chromosomes. Fragments (RFLP: restriction fragment length polymorphisms) differ in length and number of fragments produced , will migrate different distances in electrophoretic gel. USES: Forensics: DNA fingerprints uses RFLP (random fragment length polymorphisms) analysis. No two RFLP’s are alike. Paternity Cases Evolutionary Relationships Human Genome Project Involves sequencing the entire genome: this provides the exact order of nucleotide pairs in each fragment and chromosome, physical mapping each gene Genome represents all genes present in a organism. Human genome is about 3 billion nucleotide pairs of DNA, most does not code for genes Human Genome is 1000 X larger that that in E. coli Human G. has about 50000-100000 genes E. coli 2000 genes 97% is non-coding consisting of promoter and enhancers Junk DNA include introns and non-coding regions between genes Benefits: insight into embryo development; evolution, identification of genes that cause genetic disorders and genes in common diseases like cancer GMO= genetically modified foods