CH 13: DNA, RNA & PROTEINS STUDY GUIDE I. Section 1: The Structure of DNA A. DNA: The Genetic Material 1. In the 1800’s, Mendel showed that 2. We now know that the instructions for inherited traits are called __________. 3. Before the 1950’s scientists did NOT know what genes were made of. Since then, we now know that genes are made of ________________________________________ or DNA. 4. Prior Knowledge: What are the building blocks/monomers of DNA called? B. Searching for the Genetic Material – DNA was discovered in 1869 by a Swiss doctor named Miescher, but he did not know that it was the hereditary material. By the 1900’s scientists knew that hereditary material was in the cell but they didn’t know exactly where in the cell it was located. Three major experiments helped scientists figure out that DNA is the hereditary material located in the nucleus of all eukaryotic cells. DESCRIBE EACH SCIENTIST’S EXPERIMENT. 1. Griffith Discovers Transformation - 1928 a. Identify the 3 types of organisms Griffith worked with. b. What disease was Griffith working with? c. Griffith’s 4 Experiments: 1. Injects mice with the R strain (rough pneumonia bacteria): What happened to the mice? 2. Injects mice with the S strain (has the polysaccharide capsule covering it): What happened to the mice? 3. Injects mice with heat-killed S strain bacteria: What happened to the mice? 4. Injects mice with harmless R strain bacteria mixed with harmless DEAD/heat-killed S strain bacteria: What happened to the mice? How does Griffith explain these results? d. What is Griffith’s conclusion regarding his experiment? 2. Avery’s Experiments with Nucleic Acids – 1940’s a. What was Avery trying to figure out? b. Identify the organisms Avery was working with. c. Which organic molecule (carbohydrate, lipid, protein, or nucleic acid) caused the harmless R strain bacteria to transform into disease-causing S strain? d. Do you think all scientists were convinced that DNA was the hereditary material? 3. Hershey-Chase Experiment – 1952 a. What were Hershey & Chase trying to determine? b. Identify the organisms Hershey & Chase were working with. c. What 2 organic molecules are viruses like the bacteriophage made of? d. Explain Hershey & Chase’s conclusions. e. So, is it the protein or the DNA that carries our hereditary information/genes? f. By the early 1950’s, most scientists were convinced that DNA is the hereditary material. C. The Shape of DNA 1. Name the 2 scientists that discovered the structure of the DNA molecule. 2. Describe the shape of the DNA molecule & give its scientific name. 3. Identify the monomers/building blocks of nucleic acids. 4. Notice the 3 parts of a nucleotide on the labeled diagram below. NOTE: You may be asked to label a nucleotide sometime in the future. 5. Name the 5-carbon sugar in the DNA nucleotide. Use the diagram of the DNA molecule to answer the following 3 questions: 6. What are the “sides” of the DNA molecule made of? 7. What are the “rungs” of the DNA molecule made of? 8. What connects the 2 strands together? D. The Information in DNA 1. The order of the nitrogen bases determines the information in the DNA molecule while the paired nitrogen bases allow the DNA molecule to be copied. 2. Name the 4 nitrogenous bases in DNA. 3. Which nitrogen bases are single rings/pyrimidines? 4. Which nitrogen bases are double rings/purines? 5. How do the nitrogen bases pair up & what type of bond holds them together? 6. If the one side of the DNA molecule has the sequence TATGAGAGTCTG what is the sequence of nitrogen bases on the complimentary strand? E. Discovering DNA’s Structure – Identify each scientist’s contribution to the discovery of DNA’s structure. 1. In 1949 this scientist’s research showed that no matter what organism’s DNA he studied the amount of adenine always equaled the amount of thymine & the amount of cytosine always equaled the amount of guanine. Name the scientist. 2. In 1952 these 2 scientists used x-ray diffraction to photograph DNA. Name the scientists. 3. In 1953 these 2 scientists used Chargaff’s data & Franklin’s x-ray data to build a 3-D model of the DNA molecule. Name the 2 scientists. 4. What happened in 1962 & why wasn’t Franklin part of the group? F. Key Ideas – use the information in this section to answer these questions. 1. What is genetic material composed/made of? 2. List the experiments & the scientists that helped identify the role of DNA as the hereditary material. 3. What is the shape of the DNA molecule? 4. How is genetic information organized in a DNA molecule? 5. What scientific investigations led to the discovery of DNA’s structure? Identify the scientists involved. II. Section 2: Replication of DNA Check out this web site: http://www.pbs.org/wgbh/aso/tryit/dna/# - DNA Replication A. DNA Replication - When cells divide, each new cell contains a ____________________________ of the original cell’s DNA. DNA is made of 2 strands of complementary base pairs. If the 2 strands are separated, each strand serves as a pattern (template) for making a new complementary strand of DNA. The end result is the formation of 2 exact copies of DNA from the original DNA. STEP 1: UNWINDING & SEPARATING DNA STRANDS The DNA double helix ____________ & enzymes/proteins called _________________ separate the 2 original DNA strands. The Y-shaped areas of separation are called _____________________. STEP 2: ADDING COMPLEMENTARY BASES ______________________ nucleotides are added to each strand by enzymes called ________ _____________________. The addition of the complementary nucleotides occurs at the Y-shaped ___________________ __________. NOTE: Where do the nucleotides we need to build new DNA come from? STEP 3: FORMATION OF 2 IDENTICAL MOLECULES ______ DNA molecules are formed. They are identical to each other and to the original _______ ____________________. Each double-stranded DNA helix is made of one _______ strand of DNA & one _________________ strand of DNA. The nucleotide sequence of both these DNA molecules is _______________ to each other & to the ______________ DNA molecule. B. Replication Proteins – involved in replicating DNA. 1. DNA Helicase – discuss this enzyme’s function in the space below. 2. DNA Polymerase – discuss this enzyme’s 2 functions in the space below. a. b. NOTE: Why is proofreading the new DNA strands so important? (THINK: Why should you proofread your work before turning it in?) C. Prokaryotic & Eukaryotic Replication 1. Prokaryotic DNA Replication – occurs in bacteria cells. a. Describe the shape of the bacterial chromosome. b. What 2 organic molecules make up the bacterial chromosome? c. How many chromosomes does a bacterial cell have? d. Explain how the bacterial chromosome replicates. 2. Eukaryotic DNA Replication – occurs in protist, fungi, plant, & animal cells. a. Describe the shape of the eukaryotic chromosome. b. What 2 organic molecules make up the eukaryotic chromosome? c. How many chromosomes can a eukaryotic cell have? d. Explain how our eukaryotic chromosomes replicate. e. How long does it take to replicate an entire human chromosome? f. Size of Eukaryotic DNA Which chromosomes are smaller; prokaryotic or eukaryotic? How many chromosomes are in the nucleus of the cell of a normal human being? If all 46 of your chromosomes were lined up end to end, how long a line would you have? III. Section 3: RNA & Gene Expression A. Introduction 1. What organic molecules perform most of the functions of the cell? 2. What molecule carries the code or information for the making of proteins? 3. Which nucleic acid takes the information for making a protein from DNA? 4. Define the following terms: Gene Expression – Transcription – Translation – B. RNA: A Major Player 1. List the 3 differences between DNA & RNA below. DNA RNA 2. Name the 3 main types of RNA a. b. c. C. Transcription: Reading of the Gene on DNA 1. What happens during transcription? 2. Description of transcription. a. Step 1 – Enzyme ______ ________________ binds/attaches to a specific area of DNA in the gene called the ________________. The promoter acts as the “__________” location. b. Step 2 – Enzyme ______ _______________ untwists/unwinds & separates the 2 strands on the double helix exposing the ______ nitrogen bases on each strand. c. Step 3 – RNA polymerase adds & links/joins complementary _____ bases/nucleotides as it “_______” the gene on DNA. Whenever the RNA polymerase reads an adenine on the DNA molecule a _____________ nucleotide pairs with the adenine rather than a thymine. A _____________ strand of RNA is formed. Eventually, the RNA polymerase reaches a “_______” location on the DNA molecule & transcription ends. The DNA re-twists into the double helix & the single strand of mRNA can now leave the nucleus & enter the cytoplasm of the cell. D. Transcription Versus Replication TRANSCRIPTION REPLICATION E. The Genetic Code: Three-Letter “Words” 1. Each group of 3 nitrogen bases on the m-RNA is called a ________________. 2. Each codon (aka: triplet codon) codes for 1 of 20 __________ __________ or acts as a ____________ or ________ signal for translation (making a protein). 3. Previous Knowledge: Amino acids are the monomers/ building blocks of ___________ __________. 4. _______________ amino acids have more than one _______________. Example: UCU, UCC, UCA, UCG all code for the amino acid _________________. 5. The codon AUG is a ______________ codon. The codons UAG, UAA, & UGA are ____________ codons & signal the ribosome to stop reading the code on the m-RNA & protein synthesis/translation stops. 6. The matching of codons & amino acids is known as the ______________ __________. F. Translation: RNA to Proteins 1. What is the cell making during the process of translation? 2. Previous Knowledge: What is a polypeptide? 3. Description of Translation – the building of a protein a. Step 1: The ribosome attaches to the ________ at the _____________ codon AUG. A ________ with the anticodon _______ and carrying the amino acid methionine binds to the m-RNA. b. Step 2: The ribosome reads the next codon on the m-RNA & another t-RNA brings another ___________ _________ which binds to the first amino acid in the protein chain. A ______________ bond joins the amino acids together. c. Step 3: The first t-RNA detaches from the ribosome & goes back into the cytoplasm to pick up another ____________ __________. The ribosome continues reading the codons on the m-RNA, the t-RNA’s continue bringing & adding ___________ _________ to the protein/polypeptide chain. d. Step 4: When the ribosome reads a _________ codon the process of translation or _____________ synthesis stops. e. Step 5: The protein chain/____________________ is released into the cytoplasm, & the ribosome separates from the m-RNA. 4. Several _______________ can translate the same piece of m-RNA at the same time, which allows _____________copies of the same protein to be made very rapidly.