1 MATERIALS AND METHODS 2 Histopathology and Immunohistochemistry. 3 Mice were sacrificed, and their livers were dehydrated, embedded in paraffin, sectioned, 4 and stained with hematoxylin-phloxine-safran. Scoring of liver inflammation was done 5 blindly using the modified Ishak histological activity index1. 6 Lymphocyte isolation from liver and spleen. 7 Liver from xenoimmunized mice were perfused via the portal vein with RPMI 1640 and 8 removed. Liver sections and spleen were finely minced in RPMI 1640, passed through a 9 100-gauge steel-mesh and centrifuged at 400 g for 5 min at 4oC. Cells contained in the 10 supernatant were washed 3 times with RPMI 1640/5% foetal calf serum before being 11 centrifuged on a Percoll gradient to purify lymphocytes2. 12 Enzyme-Linked Immunosorbent Assay. 13 Detection of autoantibodies against FTCD assay was performed as previously described3. 14 Briefly, the fusion protein produced by the pEt-30C-FTCD (murine FTCD) was purified 15 and used as antigen in the enzyme-linked immunosorbent assay (0.2 μg/well). IL-10 16 levels from proliferation supernatant were measured using the Mouse IL-10 ELISA 17 Ready-SET-Go! Kit (eBioscience, San Diego, California). 18 CD4+CD25+ and CD8+ T cell isolation. 19 CD4+CD25+ T cells were purified from isolated lymphocytes from the spleen or liver 20 using the CD4+CD25+ mouse regulatory T cell isolation Kit (Miltenyi Biotec, Bergisch 21 Gladbach, Germany) and the isolation of untouched CD8+ T cell was performed using the 22 CD8a+ T Cell Isolation Kit II (Miltenyi Biotec, Bergisch Gladbach, Germany). 23 Proliferation assay 1 24 Isolated lymphocytes and/or purified CD8+ T cells (Miltenyi Biotech, Bergisch Gladbach, 25 Germany) from the spleen and liver of vaccinated animals were labeled with CFSE 26 (5μM) (Vybrant™ CFDA SE Cell Tracer Kit, Molecular Probes, Eugene, Oregon) and 27 incubated with syngenic purified antigen presenting cells (APC) from spleen4 previously 28 incubated with 100ug/1x106 cells of purified mouse FTCD in RPMI1640 supplemented 29 with 5% foetal calf serum and 20 U/ml of murine rIL-2 (Invitrogen, Carlsbad, 30 California). In proliferation suppression assays, purified CD4+CD25+ T cells (Miltenyi 31 Biotech, Bergisch Gladbach, Germany) were co-incubated with CFSE-labelled CD8+ T 32 cells at different ratios. After 3 days, cells were labeled with APC coupled anti-CD8+ 33 (eBioscience, San Diego, California) and 7-AAD (Invitrogen, Carlsbad, California). Cells 34 were analyzed by flow cytometry (BD biosciences, Mississauga, Canada) and the 35 precursor frequency was determined using FlowJo (Treestar, Ashland, Oregon). 36 Combined CD107a mobilisation assay and intracellular Granzyme B and IFN-γ 37 staining. 38 1x106 lymphocytes isolated from 7 month-old xenoimmunized C57BL/6 mice were 39 incubated for 5 hours at 37°C with 100ug of purified mouse FTCD in RPMI1640 40 supplemented with 5% foetal calf serum and in presence of FITC-labelled CD107a 41 antibody, brefeldin A and monensin (eBioscience, San Diego, California). Surface 42 staining with PE-Cy7-CD8a and Alexa700-CD62L and viability staining with 7-AAD 43 was then performed according to the manufacturer guideline (eBioscience, San Diego, 44 California). 45 (eBioscience, San Diego, California) was performed according to the manufacturer Intracellular staining with PE-IFN-γ and eFluor450-granzyme B 2 46 guideline. Cells were analyzed by flow cytometry (BD biosciences, Mississauga, Canada) 47 and the FlowJo analysis software (Treestar, Ashland, Oregon). 48 CYP2D9, FTCD, AIRE, CXCL9 and CXCL10 expression Level. 49 For the measurement of CYP2D9, FTCD and AIRE thymic expression, RNA was 50 isolated from thymuses of newborn mice (1-2 days old) using the RNeasy Micro kit 51 (QIAGEN, Santa Clarita, California). Expression levels of FTCD and CYP2D9 in the 52 liver were performed using RNA isolated from liver of 8 week-old mice. Expression of 53 FTCD, CYP2D9 and AIRE in these organs was quantified using specific primers (5’- 54 TGCTGCCTGTTTGGAGGCAA-3’, 5’-AAGCAAGGCTTGGGCCACTT-3’; 5’- 55 GAGCAGAGGCGATTCTCTGT-3’, 5’-CCCAGGTGGTCCTATTCTCA-3’; 5’- 56 GGGGCGGCCAGGTCCAGCAC-3’ and 5’-GGTGTGCCTGGCGTGGGAGTCG-3’, 57 respectively). For the expression level of CXCL9 (MIG) and CXCL10 (IP10), RNA was 58 isolated from livers of xenoimmunized animals and quantification was performed using 59 specific 60 CCGGATTCAGACATCTCTGC-3’; CXCL9: 5’-GACATTCTCGGACTTCACTC-3’, 61 5’-GATTCAGGGTGCTTGTTGGT-3’). PCR was performed using one-step RT-PCR 62 (QIAGEN, Santa Clarita, California) and murine β-actin expression level was used as 63 internal reference. 64 Flow Cytometry Analysis. 65 The frequency of CD4+ regulatory T cells in blood, spleen, lymph nodes or amongst 66 liver-infiltrating lymphocytes was assessed using the mouse regulatory T cell staining kit 67 (eBioscience, San Diego, California). Fluorochrome-labeled antibodies against CXCR3, 68 CD8, CD4, CD25 were obtained from eBioscience (San Diego, California). primers (CXCL10: 5’-GTGCTGCCGTCATTTTCTGC-3’, 5’- 3 69 Statistical Analysis. 70 Differences between groups were tested using one-way analysis of variance (ANOVA) 71 with Tukey's post-hoc test. Correlation coefficients were computed using Pearson's test. 72 In all graphs, error bars represent standard error of means. All statistical analyses were 73 performed using GraphPad Prism version 5 (GraphPad Software, CA). 74 4 75 SUPPORTING FIGURE LEGEND. 76 77 Figure 1. CD8+ T cells from xenoimmunized C57BL/6 mice are cytotoxic. A. Isolated 78 T cells from xenoimmunized C57BL/6 mice were incubated with murine FTCD and 79 degranulation was assayed using CD107a staining combined with Granzyme B and 80 Interferon-γ intracellular staining. B. 15.9 +/- 5.5% of activated CD8+ T cells 81 (CD8+CD62L-) degranulated in presence of FTCD of which, 33.1 +/- 2.3% expressed 82 Granzyme B, 26.4 +/- 5.4% expressed IFN-gamma and 17.2 +/- 3.5% expressed both. 83 84 5 85 REFERENCES 86 87 88 89 90 91 92 93 94 95 96 97 1. 2. 3. 4. Ishak, K., et al. Histological grading and staging of chronic hepatitis. J Hepatol 22, 696-699 (1995). Lapierre, P., Beland, K., Martin, C., Alvarez, F., Jr. & Alvarez, F. Forkhead box p3+ regulatory T cell underlies male resistance to experimental type 2 autoimmune hepatitis. Hepatology 51, 1789-1798. Lapierre, P., Beland, K., Martin, C., Alvarez, F., Jr. & Alvarez, F. Forkhead box p3+ regulatory T cell underlies male resistance to experimental type 2 autoimmune hepatitis. Hepatology 51, 1789-1798 (2010). Inaba, K., et al. Isolation of dendritic cells. Curr Protoc Immunol Chapter 3, Unit 3 7 (2009). 6