Chapter 18—Cell-Cycle Regulation and the Genetics of Cancer Fill in the Blank 1. Mutations in the RB gene have been linked to inheritance between generation of some types of cancers. A mutation in RB is dominant for _____________________ cancer in individuals, while a mutation in RB is recessive for ___________________ cancer in individual cells. Ans: susceptibility to, expression of (or progression to) Difficulty: 3 2. Researchers have isolated cell-cycle-defective, temperature sensitive mutants in which a protein needed for cell division functions normally at a _____________________ temperature but loses function at a higher ______________________ temperature. Ans: permissive, restrictive Difficulty: 3 3. An enzyme converts a ___________________________ to a _______________________ . Ans: substrate, product Difficulty: 3 4. _________________________________ kinases control the cell cycle by phosphorylating other proteins. Ans: cyclin-dependent Difficulty: 3 5. An arrest in the cell cycle for repair is called a ____________________. Ans: check point Difficulty: 3 6. An increase from the normal two copies to hundreds of copies of a given gene indicates gene ________________________ has occurred. Ans: amplification Difficulty: 3 7. During ____________________, or programmed cell death, DNA is degraded and the nucleus condenses in a response to the presence of DNA damage. Ans: apoptosis Difficulty: 3 8. _________________ factors are extracellular hormones and cell-bound signals that stimulate or inhibit cell proliferation. Ans: growth Difficulty: 3 Page 332 9. Mutant alleles that act dominantly with respect to a cancer phenotype are called _________________. Ans: oncogenes Difficulty: 3 Multiple Choice 10. A) B) C) D) E) DNA replication occurs during ______ of the cell cycle. prophase G1 phase S phase G2 phase mitosis Ans: C Difficulty: 1 11. A) B) C) D) E) Which of the following does not occur during mitosis? Segregation of sister chromatids. Duplication of chromosomal DNA. Condensation of chromosomes. Nuclear envelope breakdown. Attachment of chromosomes to mitotic spindle. Ans: B Difficulty: 2 12. The yeast Saccharomyces cerevisiae is particularly useful for genetic analysis of cell cycle control because: A) it is prokaryotic, allowing it to divide rapidly. B) mutant yeast cells form cancerous tumors. C) reproduction by budding allows easy identification of stage in cell cycle. D) all cells in a culture remain at the same stage of the cell cycle. E) yeast cells lack G1 and G2 stages. Ans: C Difficulty: 3 13. The yeast Saccharomyces cerevisiae reproduces _______________, allowing easy determination of the cell cycle stage in which a cell is found. A) ambiguously B) by fission C) sexually D) amorphously E) by budding Ans: E Difficulty: 1 Page 333 14. In the cell cycle of Saccharomyces cerevisiae, the appearance of a bud on the surface of a cell indicates that the cell: A) is entering M phase. B) has a mutation in a gene regulating G2M transition. C) is haploid. D) has a mutation in a gene regulating G2S transition. E) reaching the end of G1 phase. Ans: E Difficulty: 2 15. The temperature at which a cell with a temperature-sensitive mutation is unable to survive is considered the ___________ temperature. A) restrictive B) mutant C) dissociative D) permissive E) alternative Ans: A Difficulty: 1 16. The cells in a population of yeast cells in which all members of the population have a temperature-sensitive mutation in the same gene involved in cell cycle progression will appear _________ when shifted to the restrictive temperature. A) to vary in morphology B) as clumps of lysed cells C) to adhere to each other D) uniform in size and shape E) arrested in all stages of the cell cycle Ans: D Difficulty: 3 17. The ________ gene controls progression through “start” at the end of G1 in the cell cycle. A) CDK B) RAS C) CDC28 D) RAD9 E) DCC Ans: C Difficulty: 3 Page 334 18. A) B) C) D) E) Enzymes that covalently link phosphate groups to their substrates are termed: kinases. phosphatases. cyclins. phosphatase inhibitors. ligases. Ans: A Difficulty: 2 19. CDKs, such as CDC28, require the assistance of ____________ to carry out their enzymatic activity. A) restriction enzymes B) proteases C) nucleases D) growth factors E) cyclins Ans: E Difficulty: 2 20. ________________ are proteins that form a structural scaffold on the inner surface of the nuclear membrane. A) Mitotic tubules B) Nuclear lamins C) Chromatin fibrils D) CDKs E) Histones Ans: B Difficulty: 2 21. A) B) C) D) E) The solubility of nuclear lamins is regulated by the _____________ of lamin proteins. length phosphorylation state kinase activity molecular weight condensation Ans: B Difficulty: 3 Page 335 22. The retinoblastoma (Rb) protein regulates progression into S phase by regulating ___________ activity. A) cyclin D B) p53 C) CDK4 D) E2F E) CDC28 Ans: D Difficulty: 3 23. A) B) C) D) E) The activity of Rb is regulated by: its phosphorylation state. cyclin A. E2F. its polyA tail. its level of methylation. Ans: A Difficulty: 2 24. A) B) C) D) E) The ____________ checkpoint is disrupted by mutations that alter p53 function. G0-to-G1 G1-to-S S-to-G2 G2-to-M M-to-G1 Ans: B Difficulty: 3 25. A) B) C) D) E) Which of the following is not likely to result form the loss of functional p53? The appearance of homogenously staining regions on chromosomes. Increases propensity to arrest in G1. Alterations in the G1 to S checkpoint. An increase in gene amplification in affected cells. Generation of fragments of chromosomal DNA lacking telomeres and centromeres. Ans: B Difficulty: 3 26. A) B) C) D) E) A programmed cell change that results in cell death is referred to as: apoptosis. G1 regulation. post-translational control. cancer. metastasis. Ans: A Difficulty: 2 Page 336 27. Damage to DNA that takes place during DNA replication results in arrest of normal cells at the _______________ checkpoint. A) G0-to-G1 B) G1-to-S C) S-to-G2 D) G2-to-M E) M-to-G1 Ans: D Difficulty: 4 28. The cell-cycle checkpoint that occurs during mitosis causes nuclear division to pause until: A) DNA replication is complete. B) sister chromatids have separated. C) cytokinesis occurs. D) telophase begins. E) all chromosomes have attached to the mitotic spindle. Ans: E Difficulty: 3 29. CDKs associate with cyclins at specific stages of the cell cycle. The CDK subunit is responsible for phosphorylating a substrate protein, while the cyclin is responsible for: A) progression into G0. B) degradation of the CDK after phosphorylation. C) ubiquitin function. D) dephosphorylating Rb. E) determining which specific proteins will be phosphorylated. Ans: E Difficulty: 3 30. Which of the following is not a common consequence of mutations that eliminate cellcycle checkpoints? A) Increased DNA damage B) Decreased frequency of cell division C) Polyploidy D) Aneuploidy E) Increased chromosome loss Ans: B Difficulty: 3 Page 337 31. Molecules that function to stimulate or inhibit cell division are collectively referred to as: A) transcription factors. B) polymerases. C) kinases. D) growth factors. E) checkpoints. Ans: D Difficulty: 2 32. _______________________ are proteins that span the plasma membrane and transmit signals from outside the cell into the cytoplasm. A) Receptors B) Transcription factors C) Growth factors D) Nucleosomes E) Polymerases Ans: A Difficulty: 2 33. A) B) C) D) E) Cytoplasmic proteins that relay signals inside the cell are referred to as: growth factors. signal transducers. receptors. transcription factors. polymerases. Ans: B Difficulty: 2 34. A) B) C) D) E) In its active form, the RAS protein is associated with: DNA. ATP. GTP. RNA. GDP. Ans: C Difficulty: 3 Page 338 35. The generation of a cancerous cell requires mutations in ____________ of that cell's genes. A) none B) one C) two D) 5-10 E) more than 100 Ans: D Difficulty: 1 36. All cells in a cancerous tumor arise from a single mutant precursor cell, meaning that the cells in the tumor are: A) sporadic. B) spastic. C) benign. D) divisionary. E) clonal. Ans: E Difficulty: 3 37. A) B) C) D) E) Which of the following statements regarding cancer is true? All cancers are genetic. All cancers are sporadic. All cancers run in families. None of the above a, b, and c Ans: A Difficulty: 2 38. ______________________ are mutant forms of normal genes that act dominantly to predispose a cell to a cancerous phenotype. A) Polymerases B) Oncogenes C) Activators D) Tumor suppressors E) Proto-oncogenes Ans: B Difficulty: 2 Page 339 39. Genes whose mutant alleles can function in a recessive manner to predispose cells to cancerous growth are referred to as: A) polymerases. B) oncogenes. C) activators. D) tumor suppressors. E) proto-oncogenes. Ans: D Difficulty: 1 40. The human papilloma virus (HPV) carries a gene that functions as an oncogene by inactivating the p53 protein. The fact that the loss of p53 function is oncogenic suggests that: A) p53 normally functions to prevent uncontrolled cell division. B) The HPV protein is encoded by a tumor suppressor gene. C) p53 gene expression is upregulated by the HPV protein. D) The HPV protein functions at origins of replication on DNA. E) p53 is a proto-oncogene. Ans: A Difficulty: 4 41. A) B) C) D) E) Some oncogenic forms of the RAS protein are oncogenic because they are unable to: convert GDP to dGDP. associate with GTP. release ATP. hydrolyze GTP to GDP. convert ADP to ATP. Ans: D Difficulty: 4 42. Genes encoding which of the following protein types do not function as oncogenes when mutated? A) transmembrane receptors B) transcription factors C) signal transmitters D) growth factors E) tumor suppressors Ans: E Difficulty: 3 Page 340 43. A) B) C) D) E) Normal alleles of tumor suppressor genes function to encode proteins that: promote transition from G1-to-S. can slow the rate of cell division. increase the rate of mutagenesis. activate oncogenes. associate with growth factors at the cell surface. Ans: B Difficulty: 1 44. Tumor cells removed from an individual with retinoblastoma are _________________ for a deletion of the RB gene. A) homozygous B) heterologous C) hemizygous D) heterozygous E) endozygous Ans: A Difficulty: 2 45. Which of the following does not function to reduce the likelihood of a cell becoming cancerous? A) Alternative splicing within the nucleus B) Mismatch repair enzymes C) Proofreading ability of DNA polymerases D) Cell cycle checkpoints E) Tumor suppressor genes Ans: A Difficulty: 3 46. A) B) C) D) E) Cells that have migrated from a tumor and invaded a distant tissue are said to have: acclimated. metastasized. mutagenized. carcinogized. capacitated. Ans: B Difficulty: 1 Page 341 47. Glioblastoma multiforme (GBM) is an aggressive cancer caused by alterations in _________________ in the brain. A) arteries B) neurons C) glial cells D) mitochondria E) lymphocytes Ans: C Difficulty: 1 48. A) B) C) D) E) Glioblastoma multiforme (GBM) results from mutations in genes encoding: proto-oncogenes. tumor suppressors. cell cycle inhibitors. a and c a, b, and c Ans: E Difficulty: 2 49. Alterations in the activity of cyclin-dependent kinases can affect the _____________ cell cycle checkpoint. A) G1-to-S B) S-to-G2 C) G2-to-M D) a or c only E) a, b, or c Ans: D Difficulty: 1 50. _____________________ are enzymes that function to promote or inhibit cell cycle progression by phosphorylating specific substrates. A) Cyclins B) Growth factors C) Mutagens D) Cyclic phosphatases E) Cyclin dependent kinases Ans: E Difficulty: 2 Page 342 51. ______________________ are proteins that assist in regulating cell cycle progression and are often rapidly degraded at specific times in the cell cycle. A) Cyclins B) Growth factors C) Mutagens D) Receptors E) Cyclin dependent kinases Ans: A Difficulty: 2 52. Cyclin dependent kinases require _______________________ to catalyze phosphorylation of appropriate substrate proteins. A) cyclins B) growth factors C) mutagens D) receptors E) aneuploidy Ans: A Difficulty: 2 53. A) B) C) D) E) Genetic testing for cancer can: identify individuals that are resistant to cancer. indicate increased risk for certain cancers. predict the age of cancer onset in an individual. eliminate the possibility that an individual will develop cancer. none of the above Ans: B Difficulty: 1 54. A) B) C) D) E) Which of the following functions to regulate the G2-to-M transition? cyclin A cyclin B cyclin C cyclin D cyclin E Ans: B Difficulty: 3 Page 343 55. In Saccharomyces cerevisiae, the _________________ protein inhibits progression of the cell cycle into mitosis in response to DNA damage. A) p53 B) RAD9 C) Rb D) E2F E) CDK Ans: B Difficulty: 2 56. Proteins produced from tumor suppressor genes function as _____________________ regulators of cell cycle progression. A) proto-oncogenic B) positive C) mutant D) non-functional E) negative Ans: E Difficulty: 2 57. Oncogenes found in viral genome often cause _____________________ when incorporated into eukaryotic cells. A) cell death B) arrest in G0 C) increased cell proliferation D) arrest at the G2-to-M checkpoint E) apoptosis Ans: C Difficulty: 1 58. One characteristic of cancer is unregulated cell proliferation. A second characteristic of cancer cells is: A) the synthesis of additional copies of DNA polymerase. B) arrest in G0. C) the failure to expand clonally. D) apoptosis. E) the ability to migrate to distant tissues. Ans: E Difficulty: 2 Page 344 59. The point in the cell cycle at which a cell is committed to progression from G1 phase into S phase is termed: A) M. B) CDC28. C) G0. D) Start. E) Ontogeny. Ans: D Difficulty: 2 Matching Using the cell stages listed, indicate the stage in the cell cycle in which each event occurs in eukaryotic cells a. G0 b. G1 c. G2 d. M e. S 60. Cyclin A association with CDKs. Ans: e Difficulty: 3 61. Formation of CDK4/cyclin D complexes. Ans: b Difficulty: 2 62. DNA replication. Ans: e Difficulty: 1 63. Initial bud formation in Saccharomyces cerevisiae. Ans: b Difficulty: 2 64. Preparation for nuclear division. Ans: c Difficulty: 1 65. Chromosome segregation. Ans: d Difficulty: 1 Page 345 66. Preparation for duplication of DNA. Ans: b Difficulty: 2 67. Lamin dephosphorylation. Ans: d Difficulty: 3 68. Chromosome condensation. Ans: d Difficulty: 2 69. Cell cycle arrest in S. cerevisiae CDC28 mutants. Ans: b Difficulty: 2 70. Repair of DNA damaged by single-strand nicking. Ans: b Difficulty: 3 71. Formation of CDK2/cyclin E complexes. Ans: b Difficulty: 4 72. Phosphorylation of Rb protein. Ans: b Difficulty: 3 73. Formation of CDC2/cyclin B complexes. Ans: c Difficulty: 4 True or False 74. The cell cycle has four phases, G, S1, S2, and M. Ans: False Difficulty: 2 75. Of the approximately 300 cell types, some, once terminally differentiated, never divide again even if life continues for nearly a century. Ans: True Difficulty: 1 Page 346 76. The S phase is when sister chromosomes segregate into daughter cells. Ans: False Difficulty: 2 77. A temperature sensitive screen is completed by treating cells with mutagen, replica plating, and then selecting for growth in permissive and restrictive temperatures. Ans: True Difficulty: 1 78. Cyclin-dependent kinases together with cyclins control the timing of cell-cycle events. Ans: True Difficulty: 1 79. Cell-cycle check points are arrests to the cell cycle in which the integrity of the genome and cell-cycle machinery are “checked” prior to continuing to the next cell-cycle stage. Ans: True Difficulty: 1 80. As cells begin DNA replication in the S phase, cyclin A is degraded and cyclins D and E are synthesized. Ans: False Difficulty: 2 81. An enzyme that removes a phosphate group from proteins is called a phosphatase. Ans: True Difficulty: 1 82. DNA damage activates the p53 transcription factor, which in turn induces expression of the p21 gene. Ans: True Difficulty: 1 83. DNA damage in normal cells only rarely leads to apoptosis. Ans: False Difficulty: 2 Short Answer 84. The cells in a cancerous tumor are described as being “clonal.” What does this mean? Ans: All cells in the tumor are descendants of a single precursor cell. Difficulty: 2 Page 347 85. Cell-surface receptors function to transmit signals from the outside of the cell into the cytoplasm. Name the three protein domains that are responsible for receptors to accomplish this signal transmission. Ans: Signal-binding site, transmembrane domain, and intracellular signal transmission domain. Difficulty: 3 86. You have generated a novel mutation in a strain of S. cerevisiae, and you designate this mutation CDC90 because the mutated gene appears to encode a protein that functions in regulating cell cycle progression. Interested in studying the CDC90 mutation further, you obtain a CDC28 mutant yeast strain from a colleague and observe that the CDC90 and CDC28 mutant strains exhibit different phenotypes. How could you determine if one of these mutations functions upstream from the other in controlling progression of yeast cells through the cell cycle? Ans: Generate a mutant yeast strain that contains both the CDC28 and CDC90 mutations and perform epistatic analysis. If the double mutant has the phenotype of one of the mutations, then that mutation is epistatic and is upstream in the pathway. Difficulty: 4 87. Name two mechanisms by which a retrovirus carrying a proto-oncogene can convert to proto-oncogene to an oncogene. Ans: A mutation can occur in the viral genome that alters the sequence of the protooncogene itself, thus generating an oncogene. Or, the proto-oncogene can be inserted adjacent to a strong promoter, resulting in overexpression of the gene. Difficulty: 3 Define (Provide a two- or three- sentence definition or description of the following terms or genes) 88. Proto-oncogene Ans: Normal gene regulating cell proliferation that can become an oncogene when mutated. Difficulty: 2 89. Apoptosis Ans: Programmed cell death in which the cell coordinates its own DNA degradation and nuclear condensation. Difficulty: 3 90. CDK Ans: Cyclin-dependent kinase. A family of proteins that phosphorylate specific substrates in response to a cell-cycle dependent association with specific cyclins. Difficulty: 2 Page 348 91. Signal transduction Ans: The relaying of a signal through the cytoplasm to the nucleus in order to mediate a cellular response to an extracellular signal. Difficulty: 3 92. Oncogene Ans: Mutant allele of a proto-oncogene that acts dominantly to promote a cancerous phenotype. Difficulty: 2 93. RB Ans: Retinoblastoma tumor suppressor gene. Unphosphorylated form of Rb gene product inhibits a transcription factor required for DNA replication, while phosphorylation of Rb allows progression into S-phase. Difficulty: 2 94. Astrocyte Ans: Glial cell that provides support for neurons in the brain. Multiple mutations in astrocytes often result in the generation of cancerous brain tumors referred to as astrocytomas. Difficulty: 4 95. Tumor suppressor gene Ans: Encodes gene products that inhibit unregulated cell division. Mutant tumor suppressor alleles function recessively in promotion of a cancerous phenotype in a cell. Difficulty: 2 96. Growth factor Ans: Molecule that affects cell proliferation. Generally, growth factors stimulate proliferation by associating with receptor proteins on the affected cell. Difficulty: 2 97. Glioblastoma multiforme Ans: The most malignant form of brain cancer, resulting from multiple mutations in genes regulating proliferation in a glial cell. Difficulty: 3 Page 349 Experimental Design and Interpretation of Data 98. A patient presents with cancer tumors in several organs. You genotype for several genes often related to the causation of cancer and find that cells from each disparate tumor have the same genotype for all of the genes tested. How do you interpret this data? Ans: The results are highly suggestive that the cells are clonal, arising from a single cell, and metastasized to the different organs found to contain cancerous tumors whose cells are genetically identical for those genes tested. Difficulty: 4 99. You wish to determine which genes are aberrantly expressed in a certain type of cancer. How would you measure a possible transcription difference on a genomic level between the cancer cells and normal cells? Ans: Isolate tumor cells and normal cells and perform microarray analysis using chips that contain the entire human genome. Differences in expression are detected by red/green fluorescence indicating up and down regulation of tumor cells compared to normal control cells. Difficulty: 4 100. You have identified a mutation in Gene X that appears along with mutations in three other genes to cause an increased likelihood for a certain cancer. Develop an assay to test patients for the polymorphism in Gene X. Ans: Utilize sequence information to determine differences in restriction enzyme sites between the wild-type and the mutant alleles. Using an enzyme that cuts one but not the other you can complete Southern analysis on digested DNA from each and look for one versus two bands. Alternatively you can design PCR primers and directly detect the bands by gel electrophoresis. Difficulty: 4 101. Using yeast, you wish to test the hypothesis that two new temperature-sensitive mutations you have isolated are involved in different steps of the cell cycle. Describe the experimental setup necessary to do so. Ans: Test each single mutant for cell cycle arrests as well as a double mutant (Epistasis experiment) containing both mutations. The phenotype of the double mutant will be the same as one of the two single mutants. This will represent the gene involved in the earlier of the two steps in the cell cycle. Difficulty: 4 Page 350