ONLINE SUPPORTING MATERIAL
TITLE: RANGE-WIDE GENETIC HOMOGENEITY IN THE CALIFORNIA SEA MUSSEL (MYTILUS CALIFORNIANUS): A
COMPARISON OF ALLOZYME, NUCLEAR DNA MARKERS, AND MITOCHONDRIAL DNA SEQUENCES.
AUTHORS: Jason A. Addison, Brian S. Ort, Kathryn A. Mesa, and Grant H. Pogson
Supporting Material 1. Summary of studies comparing the magnitude of population structuring between allozymes and nuclear DNA
markers. The mean divergence column indicates the concordance between mean FST or RST using the method of Pogson et al. (1995).
Species names are listed alphabetically.
Common name
Species name
Mean Divergence
Reference
River mangrove
Aegiceras corniculatum
Mottled duck
Anas fulvigula
Herbaceous perennial
Antirrhinum microphyllum
allozymes = RAPDs
Torres et al. 2003 Am. J. Bot. 90:85-92
Alder-leaf birch
Betula alnoides
allozymes = RAPDs
Zeng et al. 2003. Ephytica 134:33-41
Cranberry fritillary
Boloria aquilonaris
allozymes = RAPDs
Vandewoestijne and Baguette. 2002. Heredity 89:439-445
allozymes = ISSRs1
Ge and Sun. 1999. Mol. Ecol. 8:2061-2069
allozymes = microsatellites
Williams et al. 2005. Condor 107:155-161
Asian water buffalo
Bubalus bubalis
Buffalo grass
Buchloe dactyloides
Common toad
Bufo bufo
Hairy edible crab
Cancer setosus
Perennial herb
Centaurea corymbosa
Flowering quince
Chaenomeles cathayensis
allozymes = RAPDs
Bartish et al. 2000. Theor. Appl. Genet. 101:554-563
Japanese quince
Chaenomeles japonica
allozymes = RAPDs
Bartish et al. 2000. Theor. Appl. Genet. 101:554-563
Chinese flowering quince
Chaenomeles speciosa
allozymes = RAPDs
Bartish et al. 2000. Theor. Appl. Genet. 101:554-563
Indian major carp
Cirrhinus mrigala
allozymes = microsatellites
Chauhan et al. 2007. Aquaculture 269 : 135-149
Atlantic herring
Clupea harengus
allozymes = microsatellites
Larsson et al. 2007. Mol. Ecol. 16:1135-1147
Zebrafish
Danio rerio
allozymes = microsatellites
Gratton et al. 2004. J. Zool. Syst. Evol. Research 42:54-62
European sea bass
Dicentrarchus labrax
allozymes > microsatellites
Lemaire et al. 2000. Mol. Ecol.9:457-467
Fibrous wheatgrass
Elymus fibrosus
Dusky grouper
Epinephelus marginatus
allozymes > microsatellites
De Innocentiis et al. 2001. Mol. Ecol. 10:2163-2175
Tsetse fly
Glossina pallidipes
allozymes = microsatellites
Krafsur. 2002. Insect Mol. Biol. 11:37-45
S. African abalone
Haliotis midae
Wild barley
Hordeum spontaneum
allozymes = RAPDs
Volis et al. 2005. Heredity 95:466-475
Alfalfa
Medicago sativa
allozymes = RAPDs
Jenczewski et al. 1999. Mol. Ecol. 8:1317-1330
Red mullet
Mullus surmuletus
allozymes = RAPDs
Mamuris et al. 1999. Heredity 83:30-38
Wood stork
Mycteria americana
microsatellites > allozymes
Rocha et al. 2004. Biotropica 36:248-258
Chum salmon
Oncorhynchus keta
allozymes = microsatellites
Scribner et al. 1998. Can. J. Fish. Aquat. Sci. 55:1748-1758
allozymes = microsatellites
allozymes = RAPDs
allozymes > minisatellites
allozymes > AFLPs
allozymes = microsatellites
allozymes = RAPDs
allozymes = microsatellites
Barker et al. 1997. Animal Genetics 28:103-115
Peakall et al. 1995. Mol. Ecol. 4:135-147
Scribner et al. 1994. Mol. Biol. Evol. 11:737-748
Gomez-Uchida et al. 2003. J. Crust Biol. 23:486-494
Freville et al. 2001. Mol. Ecol. 10:879-889
Diaz et al. 2000. Genet. Resour. Crop Evol. 47:11-24
Evans et al. 2004. Mar. Ecol. Prog. Ser. 270:163-172
Sockeye salmon
Oncorhynchus nerka
allozymes > microsatellites
Allendorf and Seeb. 2000. Evolution 54:640-651
Chinook salmon
Oncorhynchus tshawytscha
allozymes = microsatellites
Smith et al., 2007. Trans. Am. Fish. Soc. 136:1674-1687
Chinook salmon
Oncorhynchus tshawytscha
SNPs > allozymes
Smith et al., 2007. Trans. Am. Fish. Soc. 136:1674-1687
Brownbeard rice
Oryza rufipogon
allozymes = RAPDs
Brownbeard rice
Oryza rufipogon
allozymes = microsatellites
Gao et al. 2002. Theor. Appl. Genet. 106:173-180
Geoduck clam
Panopea abrupta
allozymes > microsatellites
Vadopalas et al. 2004. J. Shellfish Res. 23:693-706
Clouded Apollo butterfly
Parnassius mnemosyne
allozymes = microsatellites
Meglecz et al. 1998. Hereditas 128:95-103
White spruce
Picea glauca
allozymes = ESTPs2
Jaramillo-Correa et al. 2001. Mol. Ecol. 10:2729-2740
Black spruce
Picea mariana
RAPDs3 > allozymes
Isabel et al. 1995. Proc. Nat. Acad. Sci. USA 92:6369-6373
Knobcone pine
Pinus attenuata
allozymes = RAPDs
Wu et al. 1999. Genome 42:893-908
Bristlecone pine
Pinus longaeva
RAPDs4 > allozymes
Lee et al. 2002. Am. J. Botany 89:566-577
Bishop pine
Pinus muricata
allozymes = RAPDs
Wu et al. 1999. Genome 42:893-908
Monterey pine
Pinus radiata
allozymes = RAPDs
Wu et al. 1999. Genome 42:893-908
Scots pine
Pinus sylvestris
allozymes = RAPDs
Szmidt et al. 1996. Heredity 76:412-420
Saltmarsh beetle
Pogonus chalceus
Moss
Pleurochate squarrosa (Brid.)
Sand goby
Pomatoschistus minutus
Mesopsammic flatworm
Pseudomonocelis ophiocephala
allozymes = RAPDs
Casu and Curini-Galletti. 2006. Biol. J. Linn. Soc. 87:553-576
Douglas-fir
Pseudotsuga menziesii
allozymes = RAPDs
Aagaard et al. 1998. Heredity 81:69-78
Little red flying-fox
Pteropus scapulatus
allozymes = RAPDs
Sinclair et al. 1996. Biol. Conserv. 76:45-50
allozymes > microsatellites
allozymes = nuclear ITS
allozymes = microsatellites
Cai et al. 2004. Heredity 92:409-417
Dhuyvetter et al. 2004. Mol. Ecol. 13:1065-1074
Grundmann et al. 2007. Mol. Ecol. 16:709-722
Pampoulie et al. 2004. Heredity 92:434-445
1
Sessile oak
Quercus petraea
Bird cherry-oat aphid
Rhopalosiphum padi
allozymes = microsatellites
Delmotte et al. 2002. Mol. Ecol. 11:711-723
Brown trout
Salmo trutta
allozymes = microsatellites
Corujo et al. 2004. Hereditas 141:258-271
Brown trout
Salmo trutta
allozymes = microsatellites
Colihueque et al. 2003. Aquaculture Res. 34:525-533
Brown trout
Salmo trutta
allozymes = RAPDs
Brown trout
Salmo trutta
allozymes = microsatellites
Estoup et al. 1998. Mol. Ecol. 7:339-353
Turbot
Scophthalmus maximus
allozymes = microsatellites
Buoza et al. 2002. Can. J. Fish. Aquat. Sci. 59:1460-1473
Acorn barnacle
Semibalanus balanoides
allozymes > microsatellites
Dufresne et al. 2002 Mol. Ecol. 11:113-123
Dover sole
Solea solea
RAPDs > allozymes
Exadactylos et al. 1998. J. Sea Res. 40 :117-129
Exadactylos et al. 2003. Mar. Ecol. Prog. Ser. 246:253-264
Stoplight parrotfish
Sparisoma viride
RAPDs > allozymes
Geertjes et al. 2004. Mar. Ecol. Prog. Ser. 279:225-235
Yellowfin tuna
Thunnus albacares
allozymes = RAPDs
Diaz-Jaimes and Uribe-Alcocer. 2003. Fish. Bull. 101:769-777
Bolander mule ears
Wyethia bolanderi
allozymes = RAPDs
Ayres and Ryan. 1999. Am. J. Bot. 86:344-353
El Dorado Co. mule ears
Wyethia reticulata
allozymes = RAPDs
Ayres and Ryan. 1999. Am. J. Bot. 86:344-353
Maize
Zea mays
allozymes = RAPDs
Dubreuil and Charcosset. 1998. Theor. Appl. Genet. 96:577-587
allozymes = RAPDs
Le Corre et al. 1997. Mol. Ecol. 6:519-529
Cagigas et al. 1999. Mar. Biotechnol. 1:286-296
ISSRs = intersimple sequence repeat polymorphisms; 2 ESTPs = expressed sequence tag polymorphisms; 3,4 mean FST-value for
RAPDs not significantly different from zero.
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