1 SUPPLEMENTARY DATA 2 Results 3 The recombinant Lmdd-MPFG strain was stable in vivo after 20 generations 4 The in vivo stability of the Lmdd-MPFG strain was examined according to the 5 number of viable bacteria at every five passages, by plating the bacteria on both 6 selective and nonselective media. We observed no significant differences (P=0.1085) 7 in colony forming unit (CFU) counts after 20 generations by plating under each 8 condition, suggesting that the recombinant bacteria are extremely stable, with no loss 9 or modification of the transgene during sequential replications in vivo (Supplementary 10 Figure S1a). The expression of the segments was retained by the bacteria recovered 11 from the spleens 3 days post-injection after every 5 passages, showing the in-vivo 12 stability and the capacity to retain the chromosomal transgene of the strains 13 (Supplementary Figure S1b). 14 Materials and methods 15 Western blot 16 The culture supernatants from which Listeria strains grew were trichloroacetic acid 17 (TCA) precipitated and resuspended in 0.1 N NaOH + 2% SDS as described. Blots 18 were stained with an anti-flag monoclonal antibody (Zymed, San Diego, CA) and 19 alkaline phosphatase-labeled anti-rabbit goat antibody (Kirkegaard and Perry, 20 Gaithersburg, MD) was used for detection of bound anti-flag antibody as 21 recommended by the manufacturer. Blots were developed with Super Signal 22 WestDura chemiluminescent substrate (Pierce, Rockford, IL) and visualized using a 23 CCD camera. 24 In vivo stability studies and expression of Lmdd-MPFG 1 25 The stability of the recombinant L. monocytogenes integrants was determined after 26 20 passages in-vivo as described by Peters et al (Peters and Paterson, 2003). Briefly, a 27 dose of 5×107 CFU of Lmdd-MPFG was injected intravenously (i.v.) into 6–8 week 28 old mice. Single cell suspensions were prepared from the spleens three days after the 29 injection and plated on Brain-Heart Infusion (BHI) plates in the absence of D-alanine 30 to select for Lmdd-MPFG growth. Following every five passages, 25 colonies were 31 tested for growth on BHI plates containing 100 μg/ml D-alanine. At the end of the 32 stability test, one colony recovered was tested for MPFG expression by Western-blot 33 with anti-flag antibody. 34 Detection of anti-MPFG Abs by enzyme-linked immunosorbent assay (ELISA) 35 Sera were collected at week four following the last vaccination and assayed for 36 antibodies specific to HBc-Ag and MPFG fusion peptides by ELISA. For detection of 37 anti-HBc Abs, an ELISA kit from Diagnostic Automation Incorporation (Calabasas, 38 CA) was used according to the instructions. The ELISA-Peptide assay was used to 39 detect MPFG fusion peptides HBx52-60, HBx140-148, AFP158-166 and MAGE271-279. 40 Briefly, ninety-six-well plates were coated with different MPFG peptides overnight at 41 4°C and then blocked by incubation with 10 mg/ml BSA. Mouse sera were diluted 42 1:10 in PBS and applied to duplicate wells, followed by goat anti–mouse IgG 43 horseradish peroxidase (HRP) conjugates (Sigma, St. Louis, MO) as the secondary Ab 44 at a dilution of 1:5000. ABTS 1 Component Microwell Substrate (BioFX 45 Laboratories, Owings Mills, MD) was added subsequently and the assay results were 46 analyzed at OD 405. 47 In vivo depletion of CD4 or CD8 T lymphocyte subsets 48 Immunized mice were injected with 500 µg i.p. rat IgG (Abcam, Cambridge, MA), 49 anti-CD4 (clone GK1.5), and/or anti-CD8 (clone GK 2.43) on day-3 and day-1 prior 50 to challenge with Lmdd-MPFG. The depletion was verified 24 h following mAbs 51 injection by analyzing the CD8 and CD4 T cell populations in the blood. The in-vivo 2 52 cytotoxicity assay was assessed following depletion by flow cytometric (FC) analysis 53 of spleen. 54 T-cell proliferation assay 55 Responses to the six peptides were assessed in vitro by measuring proliferation 56 after antigen exposure. Splenocytes were established from immunized mice in culture 57 at 5×105 cells/well in flat-bottom 96-well plates and stimulated with 5 µg/mL, 20 58 µg/mL, or 50 µg/mL peptides in the presence of IL-2 (20 U/mL) (Protech, London, 59 UK). Splenocytes were also established without peptide or with 5 µg/mL Con A. Then 60 200 µl final culture volumes were incubated at 37°C for 5 days and pulsed with the 61 addition of [3H] thymidine at 0.4 µCi/well 16 h before harvesting. Proliferation was 62 measured using a Wallac 1450 scintillation counter. Results were expressed using the 63 stimulation index (SI), which is the ratio of counts per min (CPM) from peripheral 64 blood mononuclear cells (PBMCs) exposed to peptide stimulation to the CPM from 65 PBMC cultured in medium only. 66 IFN-γ ELISA 67 Splenocytes from immunized mice (three per group) were cultured in 24-well 68 plates at 5×106 cells/well in-vitro in the presence of 5 µg/L of the various peptides and 69 IL-2 (20 U/mL) in 1 mL of complete RPMI medium. Samples from supernatants were 70 collected on day 3 and tested for the presence of IFN-γ using a mouse IFN-γ ELISA 71 kit (BD Biosciences) according to the manufacturer’s recommendations. 72 Cell staining and flow cytometry 73 Splenocytes harvested 5 days after the last immunization were stimulated with 20 74 µg/mL various peptides in the presence of Golgiplug and then stained with 75 PE-Cy5–conjugated 76 PE-conjugated IFN-γ (clone XMG1.2; eBioscience). Treg cell staining, followed the 77 isolation of TIL populations from the tumor-bearing mice was as follows: cells were mAb against CD8 3 (clone 53-6.7; eBioscience) and 78 stained with CD4-FITC, CD25-APC, CD4-PE, anti-GITR-FITC, anti-CD62L-PE, 79 anti-CD127-PE, 80 anti-CCR4-PE, and anti-IL-10-PE and assayed on a FACScan flow cytometer (Becton 81 Dickinson). Antibodies and their respective isotypes, used as a negative control for 82 surface and intracellular staining, were all purchased from BD PharMingen. The 83 mouse regulatory T cell staining kit (eBioscience) was used for intracellular cell 84 staining for Foxp3 according to the instructions. 85 Cytotoxicity assay anti-CCR7-PE, anti-TGF-β-PE, anti-CD152-PE (CTLA-4), 86 For the measurement of cytolytic activity in vivo, target cells were pooled with 87 splenocytes from naive mice and pulsed with 20 µg/mL HBx 140-148 peptide and 88 labeled with 6 μM CFSE (CFSEhigh) (Molecular Probes) fluorescence intensity. 89 Uncoated splenocytes (control target cells) were labeled with 0.3 μM low CFSE 90 (CFSElow) fluorescence intensity. The mixed target cells (2107), at a ratio of 1:1, 91 were adoptively transferred into the immunized mice. At 24 h after injection of the 92 CFSE-labeled targets cells, spleens were removed and the ratio of CFSElow to 93 CFSEhigh cells was determined by flow cytometry. The percentage of cytotoxicity was 94 determined as follows: (1-CFSEhigh/CFSElow) ×100%. Due to the limited amounts of 95 TILs, the cytotoxic activity of TILs and MPFG-specific CTL against various targets 96 was assayed by LDH release assays, as described previously (Chen et al., 2009). 97 Interferon-γ (IFN-γ), IL-4, and IL-10 ELISPOT assay 98 Detection of antigen-specific IFN-γ-secreting T cells from TILs in response to 99 peptide stimulation was performed using ELISPOT kits (BioSource International, 100 Camarillo, CA). Briefly, 50 µl of cell suspensions from immunized or tumor burden 101 mice at 107 cells/ml were added to each well and incubated in the presence of 5 µg/ml 102 various peptides/stimulators plus IL-2 (5 U/ml) overnight at 37°C. Splenocytes 103 without peptide or with 2.5 µg/ml Concanavalin A (Con A) were used as control. For 104 the IL-4 and IL-10 Elispot assays, splenocytes from naive or immunized mice were 4 105 plated with 1ng/ml PMA and 0.5 ng/ml Inomycine (Sigma-Aldrich). IFN-γ, IL-4 and 106 IL-10 spots in the wells were then developed according to the manuscript. Results 107 were expressed as spot-forming units (SFU)/106 cells after subtracting background 108 spots. 109 Isolation of tumor infiltrating lymphocytes (TIL) 110 At selected time-points after treatment, tumors were removed from mice and 111 single-cell suspensions were prepared by enzymatic digestion. Resected tumors were 112 weighed, minced into small (1–2 mm3) pieces with a scalpel, and immersed in 10 mL 113 of digestion mixture [5% FBS in RPMI 1640, 0.5 mg/ml collagenase A (Roche 114 Diagnostic), 0.2 mg/ml hyaluronidase, type V (Sigma-Aldrich), and 0.02 mg/ml 115 DNase I (Sigma-Aldrich)] per 0.25 g of tumor tissue. The resulting cell suspensions 116 were filtered sequentially through 70- and 40-µm cell strainers (BD Falcon) and 117 washed with 5% FBS in RPMI 1640. Red blood cells (RBC) were lysed by brief 118 incubation in 0.15 M ammonium chloride solution, and cell debris was removed by 119 centrifugation using a Lympholyte-M gradient as recommended by the manufacturer 120 (Cedarlane). 121 Immunohistochemistry 122 Immunoperoxidase staining of CD4+ or foxP3 T cells was done on 4-μm sections of 123 formalin-fixed paraffin-imbedded tumors. Sections were deparaffinized and subjected 124 to heat-induced antigen retrieval using DAKO's target retrieval solution for 25 min. 125 Following endogenous peroxidase removal using 3% hydrogen peroxide in methanol, 126 the samples were incubated 2×15 min with avidin-biotin blocking reagent (Vector, 127 Burlingame, CA) and protein-blocking reagent (DAKO, Carpinteria, CA) for 15 min. 128 Slides were incubated with a 1:80 dilution of primary antibody (anti-CD4 or Foxp3) 129 or isotype control (BD PharMingen, San Diego, CA) overnight at 4°C. 130 Immunodetection was done using a secondary biotinylated-polyclonal anti-Rat IgG 131 (Sigma, St. Louis, MO). Diaminobenzidine/hydrogen peroxidase was used as the 5 132 chromogen substrate. Serial sections were stained by routine H&E. 133 Supplementary Figure legends 134 Figure S1. In vivo stability and expression studies of Lmdd-MPFG strain. A, In 135 vivo stability was examined by immunizing mice with 5×107 CFU of the 136 p1565-MPFG strain intravenously in the tail vein. The CFUs were determined in the 137 homogenized spleens after 24, 48, and 72 h. Viable CFUs were determined after 138 plating on both selective and nonselective media. No colonies were recovered at the 139 time points of 72 h. Columns, mean number of CFU from each mouse; bars, SD. B, 140 Expression of MPFG fusion protein by Lmdd-MPFG by passaging in vivo. Protein 141 extracts were prepared by precipitating culture supernatants with 10% trichloroacetic 142 acid (TCA) at 4°C. The Western blot represents the expression of MPFG in the total 143 proteins secreted by the Lmdd-MPFG strains. The blot was stained with a 1:1,000 144 dilution of anti-flag antibodies. 145 Figure S2. Frequency of total CD8+ and CD4+ cells in the PBL following the 146 indicated antibody treatment. 500 µg rat IgG, anti-CD4, or anti-CD8 (clone GK 2.43) 147 were injected intraperitoneally (i.p.) to immunized mice on day-3 and day-1 prior to 148 challenge with Lmdd-MPFG. The CD8 and CD4 T cell populations in the blood 24 149 hours after mAbs injection were analyzed by flow cytometry to verify complete 150 depletion. 151 Figure S3. Detection of Th2/antibody mediated responses. Splenocytes from 152 immunized or control mice were harvested and cultured in the presence of PMA and 153 Inomycine. A, HBc-specific Abs elicited in HLA-A2 Tg mice were measured by 154 enzyme-linked immunosorbent assay (ELISA). B, The number of cytokine-secreting 155 cells for IL-4, and IL-10 was determined as described in the Supplementary Materials 156 and Methods. 6