SUPPLEMENTARY ONLINE MATERIAL Keratinocyte growth factor protects against Clara cell injury induced by naphthalene Ali Önder Yildirim1, Martina Veith1, Tanja Rausch1, Bernd Müller1 Patrick Kilb1, Laura S. Van Winkle2, Heinz Fehrenbach1 1Clinical Research Group "Chronic Airway Diseases", Medical Faculty, Philipps- University Marburg, Germany, 2Department of Anatomy, Physiology and Cell Biology, School of Veterinary Medicine and Center for Health and the Environment, University of California, Davis, California, 95615, USA MATERIALS AND METHODS Kinetics of naphthalene (NA) induced acute airway injury NA was purchased from Fisher (Aschaffenburg, Germany) and dissolved in corn oil. To analyze the kinetics of NA-induced Clara cell injury in C57BL/6 mice, mice injected with 200 mg NA per kg body weight or corn oil alone (10 µl per gram body weight) as vehicle control were killed after 2, 3, 6, 8, 12, 16, and 24 h after injection (n=3 per group). Distal airways were microdissected and processed for histologic analysis. To exclude effects of circadian rhythm, all applications were performed between 8 am and 10 am. Mice were sacrificed 12 h after NA treatment and distal airways were isolated by microdissection. RNA Isolation and Real-Time Reverse Transcription Polymerase Chain Reaction (RT-PCR) Total RNA was isolated from microdissected airways using SV Total RNA Isolation System (Promega, Germany), and cDNA was synthesized with Omniscript Reverse Transcription Kit (Quiagen, Hilden, Germany). Real-time RT-PCR was performed using QuantiTect® SYBR® Green Master Mix (Abgene, Germany) and BioRad ICycler (BioRad Laboratories, Hercules, Germany). 10 μl QuantiTect® SYBR® Green Master Mix, 1 μl of each primer at a concentration of 50 pmol/μl, and 20 μl water were added to 3 μl of cDNA, standard or water (negative control). Primer sequences were generated from the respective mRNA sequences obtained from the European Molecular Biology Laboratory (EMBL) gene bank (Table E1). Primers were synthesized by MWG Biotech (Ebersberg, Germany). Double Immunohistochemistry As described earlier [17], cross sections of airways 2 μm in thickness were deparaffinized in xylene, and rehydrated in ethanol and PBS. Endogenous peroxidase activity was inactivated with 1% H2O2 in Methanol (Roth, Karlsruhe, Germany), pH 7.2, for 30 min. Antigen retrieval was performed by microwave treatment in 3% citrate buffer at pH 6.0 (Roth, Karlsruhe, Germany). To identify ciliated cells immunostaining was performed using mouse monoclonal antibodies against -Tubulin-IV (Bio Genex, San Ramon,CA, USA; diluted 1:150). Antibodies were detected using a mouse-onmouse immunodetection kit (Vector MOM kit, Vector Laboratories). For the visualizing was using 3,3′-diaminobenzidine as chromogen according to the ABC method (Vectastain Elite ABC Kit; Vector Laboratories, USA) following the manufacturer's instructions. For the immunostaining of Clara cells the same sections were washed in PBS then incubated for 30 min in PBS with 1% bovine serum albumin (Serva, Heidelberg, Germany) followed by incubation with a polyclonal rabbit antibody (courtesy of Jörg Klug, Marburg) against Clara cell-specific protein 10 kD (CC10) diluted 1:3000 in the same solution at +37 C for 1 h. Sections were then incubated at room temperature for 30 min with anti-rabbit secondary antibody diluted 1:10., which was visualized using HistoGreen- Kit (Linaris, Wertheim-Bettingen, Germany) for 8,5 min. All sections were counterstained with hematoxylin. RESULTS Kinetics of Acute Airway Injury induced by Naphthalene At 2 h after NA-treatment, the bronchiolar epithelium lining the distal airways exhibited no alterations compared to distal airway epithelium of corn oil treated controls. However, at 3 h and 6 h post NA-injection (some) Clara cells were swollen and slightly vacuolated. From 8 h to 24 h, alterations became increasingly severe. Most Clara cells contained many vacuoles and were swollen until almost complete exfoliation was observed at 24 h after NA-treatment. At this time-point, the bronchiolar epithelium mainly consisted of squamous ciliated cells covering the basal lamina (Fig. E1). At 12 h after NA-injection, approximately 50% of the Clara cells were lost by exfoliation (see Fig. 3 of manuscript). Therefore, this time-point was chosen for all experiment to define the effect of N23-KGF pre-treatment on NAinduced acute airway injury. FIGURE LEGENDS FIGURE E1. Hematoxilin-Eosin staining of distal airways of mice. Mice were treated with naphthalene (200 mg/kg) and sacrificed after 2, 3, 6, 8, 12, 16, and 24 h. Nucleus of cells are stained dark-blue. Clara cells (arrow) as well as ciliated cells (black asterisk) are visible in the corn oil treated mice (Fig.E1 A). Mice, which were treated for 2 h (Fig.E1 B) with naphthalene (NA), reveal no morphological alteration. Slight vacuolation (white asterisk) and swelling (arrow) is seen at 3 h (Fig.E1 C) and 6 h (Fig.E1 D) after NA-injection. At 8 h (Fig.E1 E) Clara cells begin to exfoliate (arrow) and severity of morphological alterations increased at 12 h (Fig.E1 F) and 16 h (Fig.E1 F). At 24 h (Fig.E1 H) most of the Clara cells are lost by exfoliation and the basal lamina is covered by a layer of squamous epithelial cells. Scale bar 12 µm. FIGURE E2. Double immunohistochemistry for ciliated cells and Clara cells. The distal airway epithelium of mice was almost exclusively composed of Clara cells (green) and ciliated cells (brown). Sections were counterstained with hematoxylin. Scale bar 100 µm. 6 Table E1. Primers for quantitative Real-Time Reverse Transcriptase-Polymerase Chain Reaction. Gene Size bp Primer Sequence (Sense-Antisense) TM (°C) 5mGAPDH 3mGAPDH 5`- AATGGTGAAGGTCGGTGTGAAC-3` 5`- GAAGATGGTGATGGGCTTCC-3` 53, 60 262 5mPCNA 3mPCNA 5`-CCACATTGGAGATGCTGTTG-3` 5`-CCGCCTCCTCTTCTTTATCC-3` 60 128 5mCC10 3mCC10 5`-GCTCAGCTTCTTCGGACATC-3` 5`-CTCTTGTGGGAGGGTATCCA-3` 60 167 5mCyp2F2 3mCyp2F2 5`-GTCACTCGGGACACACCTTT-3` 5`-TCCTTGATGCACATTGTGGT-3` 53 116 GAPDH: Glyceraldehyde phosphate dehydrogenaase; PCNA: Proliferating Cell Nuclear Antigen; CC10: Clara cell-specific protein 10; Cyp2F2: cytochrome P450, family 2, subfamily f, polypeptide 2